useGrid = 1 scriptOnGrid = 1 sgeScript = -v PATH,LD_LIBRARY_PATH -l m_mem_free=18g sgeOverlap = -pe threads 4 -l m_mem_free=3g sgeOverlapCorrection = -l m_mem_free=3g ovlConcurrency = 4 ovlThreads = 4 ovlCorrConcurrency = 10 ovlCorrBatchSize = 10000 ovlHashBits = 25 #ovlRefBlockSize = 4000000 #ovlHashBlockLength = 100000000 ovlMinLen=1000 cnsConcurrency = 20 cnsMinFrags = 100 frgCorrConcurrency = 7 frgCorrBatchSize = 100000 frgCorrThreads = 2 frgCorrOnGrid = 1 merylThreads = 20 merylMemory = 100000 mbtConcurrency = 7 mbtThreads = 4 frgMinLen = 4000 ovlErrorRate = 0.03 utgGraphErrorRate = 0.02 merOverlapperExtendConcurrency = 12 merOverlapperSeedConcurrency = 12 merOverlapperThreads = 2 utgGenomeSize = 12000000 unitigger=bogart