useGrid = 1 scriptOnGrid = 1 sgeOverlap = -pe threads 8 -l m_mem_free=3g sgeOverlapCorrection = -l m_mem_free=3g ovlConcurrency = 4 ovlThreads = 8 ovlCorrConcurrency = 20 ovlCorrBatchSize = 1000 ovlHashBits = 25 #ovlRefBlockSize = 4000000 #ovlHashBlockLength = 100000000 ovlMinLen=800 cnsConcurrency = 48 cnsMinFrags = 100 frgCorrConcurrency = 20 frgCorrBatchSize = 1000 frgCorrThreads = 4 frgCorrOnGrid = 1 merylThreads = 20 merylMemory = 100000 mbtConcurrency = 20 mbtThreads = 4 frgMinLen = 7000 ovlErrorRate = 0.02 utgGraphErrorRate = 0.01 merOverlapperExtendConcurrency = 12 merOverlapperSeedConcurrency = 12 merOverlapperThreads = 4 unitigger=bogart