Package: TopDom
Version: 0.10.1-9001
Title: An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Depends: R (>= 3.3.0)
Imports:
    matrixStats,
    grid,
    ggplot2,
    reshape2,
    tibble
Suggests:
    diffobj (>= 0.1.11)
Authors@R: c(person("Henrik", "Bengtsson", role = c("aut", "cre", "cph"),
                    email = "henrikb@braju.com"),
             person("Hanjun", "Shin", role = c("aut", "ctr", "cph"),
	            email = "shanjun@usc.edu"),
             person("Harris", "Lazaris", role = c("ctr", "cph"),
	            comment = "PhD Student, NYU"),
             person("Gangqing", "Hu", role = c("ctr", "cph"),
	            comment = "Staff Scientist, NIH"),
             person("Xianghong", "Zhou", role = c("ctr"),
	            email = "XJZhou@mednet.ucla.edu"))
Description: The 'TopDom' method identifies topological domains in genomes from Hi-C sequence data (Shin et al., 2016 <doi:10.1093/nar/gkv1505>).  The authors published an implementation of their method as an R script (two different versions; also available in this package).  This package originates from those original 'TopDom' R scripts and provides help pages adopted from the original 'TopDom' PDF documentation.  It also provides a small number of bug fixes to the original code.
License: GPL
LazyLoad: TRUE
URL: https://github.com/HenrikBengtsson/TopDom
BugReports: https://github.com/HenrikBengtsson/TopDom/issues
RoxygenNote: 7.1.2
Roxygen: list(markdown = TRUE)