{ "cells": [ { "cell_type": "code", "execution_count": 808, "metadata": {}, "outputs": [], "source": [ "import pandas as pd\n", "from lohia_utilities.create_corr_network import rank" ] }, { "cell_type": "code", "execution_count": 809, "metadata": {}, "outputs": [], "source": [ "import re \n", "\n", "def sorted_nicely( l ): \n", " \"\"\" Sort the given iterable in the way that humans expect.\"\"\" \n", " convert = lambda text: int(text) if text.isdigit() else text \n", " alphanum_key = lambda key: [ convert(c) for c in re.split('([0-9]+)', key) ] \n", " return sorted(l, key = alphanum_key)" ] }, { "cell_type": "code", "execution_count": 1408, "metadata": {}, "outputs": [], "source": [ "import matplotlib\n", "import matplotlib.pyplot as plt\n", "from matplotlib.colors import LinearSegmentedColormap\n", "import matplotlib.ticker as plticker\n", "from matplotlib.colors import LogNorm\n", "\n", "\n", "def plots_with_1_level(group_x):\n", "\n", " change_group_level_1 = df_2_or_uniq.groupby(['chrom_x'])\n", " nrow = int(len(change_group_level_1.groups.keys())/3) + 1\n", " ncol = 3\n", " fig, axes = plt.subplots(nrows=nrow, ncols=ncol, figsize=(4*ncol, 4*nrow),sharex=True,sharey=True) \n", "\n", " for key_level_1,ax in zip(sorted_nicely(change_group_level_1.groups.keys()),axes.flatten()):\n", " given_group_level_1 = change_group_level_1.get_group(key_level_1)\n", " #given_group2 = given_group_level_1.groupby(['order_diff', 'category']).mean().groupby(level=2)['exp'].plot(ax=ax)\n", " given_group2 = given_group_level_1.groupby([group_x]).mean()['exp'].plot(ax=ax)\n", " given_group2 = given_group_level_1.groupby([group_x]).mean()['exp (GK)'].plot(ax=ax)\n", " #given_group2 = given_group_level_1.groupby([group_x]).mean()['SRP063477'].plot(ax=ax)\n", " #given_group2 = given_group_level_1.groupby([group_x]).mean()['SRP026208'].plot(ax=ax)\n", " #given_group2 = given_group_level_1.groupby([group_x]).mean()['SRP115956'].plot(ax=ax)\n", "\n", " ax.axhline(y=0.5, color='r', linestyle='-')\n", " #ax.set_xlim([0, 2000])\n", " ax.legend()\n", " rects = ax.patches \n", " ax.set_title('%s' %(key_level_1))\n", " #ax.set_ylabel('%Population')\n", " ax.set_xlabel('Distance between gene pairs (MB)')\n", " ax.set_ylabel('Co-expression')\n", " \n", "\n", "def plots_with_2_groups(group_2='None', group_3_x='category'): \n", " change_group_level_1 = df_2_or_uniq.groupby(['chrom_x'])\n", " change_group_level_2 = df_2_or_uniq.groupby([group_2])\n", " nrow = len(change_group_level_1.groups.keys())\n", " ncol = len(change_group_level_2.groups.keys())\n", " fig, axes = plt.subplots(nrows=nrow, ncols=ncol, figsize=(8*ncol, 8*nrow),sharey=True) \n", "\n", " for key_level_1,ax_row in zip(sorted_nicely(change_group_level_1.groups.keys()) ,axes):\n", " given_group_level_1 = change_group_level_1.get_group(key_level_1)\n", " change_group = given_group_level_1.groupby([group_2])\n", " for key,ax in zip(change_group.groups.keys(),ax_row):\n", " given_group = change_group.get_group(key)\n", " #given_group2 = given_group.groupby([group_3_x, 'category']).mean().groupby(level=1)['exp'].plot(ax=ax)\n", " given_group2 = given_group.groupby([group_3_x]).mean()['exp'].plot(ax=ax)\n", " given_group2 = given_group.groupby([group_3_x]).mean()['exp_georg'].plot(ax=ax)\n", " ax.legend()\n", " rects = ax.patches \n", " ax.set_title('%s, %s' %(key_level_1,key))\n", " ax.axhline(y=0.5, color='r', linestyle='-')\n", " ax.set_ylabel('%Population')\n", " ax.set_ylim([0.3, 0.9])\n", " \n", " \n", "def plots_with_2_groups_same_plot(group_2='None', group_3_x='category'): \n", " change_group_level_1 = df_2_or_uniq.groupby(['chrom_x'])\n", " change_group_level_2 = df_2_or_uniq.groupby([group_2])\n", " nrow = int(len(change_group_level_1.groups.keys())/3) + 1\n", " ncol = 3\n", " fig, axes = plt.subplots(nrows=nrow, ncols=ncol, figsize=(4*ncol, 4*nrow),sharey=True, sharex=True) \n", "\n", " for key_level_1,ax in zip(sorted_nicely(change_group_level_1.groups.keys()) ,axes.flatten()):\n", " given_group_level_1 = change_group_level_1.get_group(key_level_1)\n", " change_group = given_group_level_1.groupby([group_2])\n", " for key in change_group.groups.keys():\n", " given_group = change_group.get_group(key)\n", " #given_group2 = given_group.groupby([group_3_x, 'category']).mean().groupby(level=1)['exp'].plot(ax=ax)\n", " given_group2 = given_group.groupby([group_3_x]).mean()['exp'].plot(ax=ax)\n", " #given_group2 = given_group.groupby([group_3_x]).mean()['exp_georg'].plot(ax=ax)\n", " #ax.legend()\n", " rects = ax.patches \n", " ax.set_title('%s, %s' %(key_level_1,key))\n", " ax.axhline(y=0.5, color='r', linestyle='-')\n", " ax.set_ylabel('Co-expression')\n", " ax.set_xlabel('Distance between gene pairs (MB)')\n", " #ax.set_ylim([0.3, 0.9])\n", " \n", "\n", "def plots_with_1_level_3d(df, group_x):\n", " change_group_level_1 = df.groupby(['chrom_x'])\n", " nrow = int(len(change_group_level_1.groups.keys())/3) + 2\n", " ncol = 1\n", " fig, axes = plt.subplots(nrows=nrow, ncols=ncol, figsize=(4*ncol, 4*nrow)) \n", "\n", " for key_level_1,ax in zip(sorted_nicely(change_group_level_1.groups.keys()),axes.flatten()):\n", " given_group_level_1 = change_group_level_1.get_group(key_level_1)\n", " H = given_group_level_1.pivot_table(index='gene_order_tss_x', columns='gene_order_tss_y', values=group_x)\n", " #print (H)\n", " #print ((H - H.T).max().max())\n", " #H.mask(H < 0, inplace=True)\n", " #elix.reset_index(drop=True, inplace=True)\n", " #print (H.max())\n", " vmax= 1\n", " cmap = LinearSegmentedColormap.from_list('mycmap', [(0/ vmax, 'red'), (1./2, 'white'), (vmax / vmax, 'blue')])\n", " #cmap = LinearSegmentedColormap.from_list('mycmap', [(0/ vmax, 'white'), (vmax / vmax, 'blue')])\n", " current_cmap = cmap\n", " #current_cmap.set_bad(color='grey')\n", " # vmax= 1000000\n", " # current_cmap = LinearSegmentedColormap.from_list('mycmap', [ (0/ vmax, 'white'), (vmax / vmax, 'blue')])\n", " # imgp = ax.imshow(H.T,origin='low', aspect='auto' , cmap=current_cmap, norm=LogNorm(vmin=1, vmax=vmax))\n", " \n", " imgp = ax.imshow(H,origin='low', aspect='auto' , vmin=0.0, vmax=vmax, cmap=current_cmap)\n", " #imgp = ax.imshow(H,origin='low', aspect='auto' , norm=LogNorm(), cmap=current_cmap)\n", " #sns.heatmap(H, annot = False) \n", " ax.set_title('%s' %(key_level_1))\n", " ax.set_yticklabels([])\n", " ax.set_xticklabels([])\n", " ax.set_xlabel(\"Genes in chromosome order\")\n", " ax.set_ylabel(\"Genes in chromosome order\")\n", " \n", " #cbar = ax.figure.colorbar(imgp, ax=ax)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 316, "metadata": {}, "outputs": [], "source": [ "df_2_or = pd.read_hdf('/data/lohia/gene_distance_expresseion/dist_files/11_dist_with_georg_hic_sub_median_hic_100.h5')" ] }, { "cell_type": "code", "execution_count": 252, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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1008016 rows × 22 columns
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ENSG00000198797 | \n", "27103679 | \n", "0.337246 | \n", "NaN | \n", "2067.0 | \n", "4.0 | \n", "27137093 | \n", "+ | \n", "3111 | \n", "3112 | \n", "ENSG00000136631 | \n", "... | \n", "459 | \n", "+ | \n", "4022 | \n", "4022 | \n", "protein_coding | \n", "Q9C0B6 | \n", "0.000000 | \n", "783.0 | \n", "chr1 | \n", "459 | \n", "
ENSG00000198797 | \n", "62659754 | \n", "0.233268 | \n", "NaN | \n", "2229.0 | \n", "4.0 | \n", "62889633 | \n", "- | \n", "2709 | \n", "2706 | \n", "ENSG00000197323 | \n", "... | \n", "459 | \n", "+ | \n", "4022 | \n", "4022 | \n", "protein_coding | \n", "Q9C0B6 | \n", "0.000000 | \n", "783.0 | \n", "chr1 | \n", "459 | \n", "
ENSG00000198797 | \n", "22187620 | \n", "0.238054 | \n", "NaN | \n", "1909.0 | \n", "4.0 | \n", "22289311 | \n", "+ | \n", "3388 | \n", "3388 | \n", "ENSG00000160688 | \n", "... | \n", "459 | \n", "+ | \n", "4022 | \n", "4022 | \n", "protein_coding | \n", "Q9C0B6 | \n", "0.000000 | \n", "783.0 | \n", "chr1 | \n", "459 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
ENSG00000116703 | \n", "115379825 | \n", "0.745924 | \n", "NaN | \n", "1454.0 | \n", "4.0 | \n", "115380275 | \n", "- | \n", "1995 | \n", "1993 | \n", "ENSG00000132485 | \n", "... | \n", "459 | \n", "- | \n", "4206 | \n", "4205 | \n", "protein_coding | \n", "P20941 | \n", "0.284553 | \n", "246.0 | \n", "chr1 | \n", "459 | \n", "
ENSG00000116703 | \n", "166170196 | \n", "0.300109 | \n", "NaN | \n", "312.0 | \n", "4.0 | \n", "166088671 | \n", "+ | \n", "665 | \n", "666 | \n", "ENSG00000158816 | \n", "... | \n", "459 | \n", "- | \n", "4206 | \n", "4205 | \n", "protein_coding | \n", "P20941 | \n", "0.284553 | \n", "246.0 | \n", "chr1 | \n", "459 | \n", "
ENSG00000116703 | \n", "14719040 | \n", "0.609088 | \n", "NaN | \n", "7470.0 | \n", "4.0 | \n", "14743406 | \n", "- | \n", "3926 | \n", "3926 | \n", "ENSG00000117533 | \n", "... | \n", "459 | \n", "- | \n", "4206 | \n", "4205 | \n", "protein_coding | \n", "P20941 | \n", "0.284553 | \n", "246.0 | \n", "chr1 | \n", "459 | \n", "
ENSG00000116703 | \n", "146299728 | \n", "0.739258 | \n", "NaN | \n", "412.0 | \n", "4.0 | \n", "146202644 | \n", "+ | \n", "1296 | \n", "1297 | \n", "ENSG00000117000 | \n", "... | \n", "459 | \n", "- | \n", "4206 | \n", "4205 | \n", "protein_coding | \n", "P20941 | \n", "0.284553 | \n", "246.0 | \n", "chr1 | \n", "459 | \n", "
ENSG00000116703 | \n", "11450787 | \n", "0.145895 | \n", "NaN | \n", "12670.0 | \n", "4.0 | \n", "11491913 | \n", "+ | \n", "4313 | \n", "4313 | \n", "ENSG00000143355 | \n", "... | \n", "459 | \n", "- | \n", "4206 | \n", "4205 | \n", "protein_coding | \n", "P20941 | \n", "0.284553 | \n", "246.0 | \n", "chr1 | \n", "459 | \n", "
180500 rows × 25 columns
\n", "\n", " | tss_tss | \n", "exp | \n", "exp_georg | \n", "hi-c-rao | \n", "hi-c-rao-common_elements | \n", "tes_tes | \n", "strand_x | \n", "gene_order_tss_x | \n", "gene_order_tes_x | \n", "Gene stable ID_x | \n", "... | \n", "strand_y | \n", "gene_order_tss_y | \n", "gene_order_tes_y | \n", "Gene stable ID_y | \n", "Gene type_y | \n", "Uniprot_dc_y | \n", "dc_y | \n", "seq_length_y | \n", "chrom_y | \n", "gene_occurence_frequency_y | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | \n", "58462976 | \n", "0.786218 | \n", "NaN | \n", "916.0 | \n", "4.0 | \n", "58507899 | \n", "+ | \n", "2357 | \n", "2357 | \n", "ENSG00000235501 | \n", "... | \n", "- | \n", "1189 | \n", "1189 | \n", "ENSG00000116898 | \n", "protein_coding | \n", "P82914 | \n", "0.128405 | \n", "257.0 | \n", "chr1 | \n", "459 | \n", "
2 | \n", "113602894 | \n", "0.977868 | \n", "0.272296 | \n", "2641.0 | \n", "4.0 | \n", "113689612 | \n", "+ | \n", "3111 | \n", "3112 | \n", "ENSG00000136631 | \n", "... | \n", "- | \n", "1189 | \n", "1189 | \n", "ENSG00000116898 | \n", "protein_coding | \n", "P82914 | \n", "0.128405 | \n", "257.0 | \n", "chr1 | \n", "459 | \n", "
3 | \n", "78046819 | \n", "0.899218 | \n", "0.541162 | \n", "2090.0 | \n", "4.0 | \n", "77937072 | \n", "- | \n", "2709 | \n", "2706 | \n", "ENSG00000197323 | \n", "... | \n", "- | \n", "1189 | \n", "1189 | \n", "ENSG00000116898 | \n", "protein_coding | \n", "P82914 | \n", "0.128405 | \n", "257.0 | \n", "chr1 | \n", "459 | \n", "
4 | \n", "118518953 | \n", "0.998236 | \n", "0.883689 | \n", "2720.0 | \n", "4.0 | \n", "118537394 | \n", "+ | \n", "3388 | \n", "3388 | \n", "ENSG00000160688 | \n", "... | \n", "- | \n", "1189 | \n", "1189 | \n", "ENSG00000116898 | \n", "protein_coding | \n", "P82914 | \n", "0.128405 | \n", "257.0 | \n", "chr1 | \n", "459 | \n", "
5 | \n", "8546940 | \n", "0.973773 | \n", "0.662356 | \n", "11198.0 | \n", "4.0 | \n", "8546822 | \n", "- | \n", "1475 | \n", "1474 | \n", "ENSG00000126107 | \n", "... | \n", "- | \n", "1189 | \n", "1189 | \n", "ENSG00000116898 | \n", "protein_coding | \n", "P82914 | \n", "0.128405 | \n", "257.0 | \n", "chr1 | \n", "459 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
3261630 | \n", "130079599 | \n", "0.227390 | \n", "NaN | \n", "1257.0 | \n", "4.0 | \n", "129732491 | \n", "+ | \n", "1946 | \n", "1953 | \n", "ENSG00000232284 | \n", "... | \n", "+ | \n", "4313 | \n", "4313 | \n", "ENSG00000143355 | \n", "protein_coding | \n", "Q9NQ69 | \n", "0.204030 | \n", "397.0 | \n", "chr1 | \n", "459 | \n", "
3261631 | \n", "126830612 | \n", "0.279398 | \n", "NaN | \n", "1342.0 | \n", "4.0 | \n", "126872188 | \n", "- | \n", "1995 | \n", "1993 | \n", "ENSG00000132485 | \n", "... | \n", "+ | \n", "4313 | \n", "4313 | \n", "ENSG00000143355 | \n", "protein_coding | \n", "Q9NQ69 | \n", "0.204030 | \n", "397.0 | \n", "chr1 | \n", "459 | \n", "
3261632 | \n", "177620983 | \n", "0.109934 | \n", "NaN | \n", "359.0 | \n", "4.0 | \n", "177580584 | \n", "+ | \n", "665 | \n", "666 | \n", "ENSG00000158816 | \n", "... | \n", "+ | \n", "4313 | \n", "4313 | \n", "ENSG00000143355 | \n", "protein_coding | \n", "Q9NQ69 | \n", "0.204030 | \n", "397.0 | \n", "chr1 | \n", "459 | \n", "
3261633 | \n", "26169827 | \n", "0.193312 | \n", "NaN | \n", "5092.0 | \n", "4.0 | \n", "26235319 | \n", "- | \n", "3926 | \n", "3926 | \n", "ENSG00000117533 | \n", "... | \n", "+ | \n", "4313 | \n", "4313 | \n", "ENSG00000143355 | \n", "protein_coding | \n", "Q9NQ69 | \n", "0.204030 | \n", "397.0 | \n", "chr1 | \n", "459 | \n", "
3261634 | \n", "157750515 | \n", "0.287252 | \n", "NaN | \n", "557.0 | \n", "4.0 | \n", "157694557 | \n", "+ | \n", "1296 | \n", "1297 | \n", "ENSG00000117000 | \n", "... | \n", "+ | \n", "4313 | \n", "4313 | \n", "ENSG00000143355 | \n", "protein_coding | \n", "Q9NQ69 | \n", "0.204030 | \n", "397.0 | \n", "chr1 | \n", "459 | \n", "
3259830 rows × 26 columns
\n", "\n", " | tss_tss | \n", "exp | \n", "exp_georg | \n", "hi-c-rao | \n", "hi-c-rao-common_elements | \n", "tes_tes | \n", "strand_x | \n", "gene_order_tss_x | \n", "gene_order_tes_x | \n", "Gene stable ID_x | \n", "... | \n", "strand_y | \n", "gene_order_tss_y | \n", "gene_order_tes_y | \n", "Gene stable ID_y | \n", "Gene type_y | \n", "Uniprot_dc_y | \n", "dc_y | \n", "seq_length_y | \n", "chrom_y | \n", "gene_occurence_frequency_y | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | \n", "161693279 | \n", "0.322285 | \n", "NaN | \n", "5.0 | \n", "4.0 | \n", "161703073 | \n", "- | \n", "106 | \n", "106 | \n", "ENSG00000175756 | \n", "... | \n", "+ | \n", "3745 | \n", "3745 | \n", "ENSG00000117152 | \n", "protein_coding | \n", "P49798 | \n", "0.000000 | \n", "205.0 | \n", "chr1 | \n", "4523 | \n", "
1809 | \n", "115378934 | \n", "0.572002 | \n", "NaN | \n", "19.0 | \n", "4.0 | \n", "115395500 | \n", "- | \n", "106 | \n", "106 | \n", "ENSG00000175756 | \n", "... | \n", "+ | \n", "2763 | \n", "2763 | \n", "ENSG00000116824 | \n", "protein_coding | \n", "P06729 | \n", "0.327635 | \n", "351.0 | \n", "chr1 | \n", "4527 | \n", "
3615 | \n", "155108715 | \n", "0.150153 | \n", "NaN | \n", "38.0 | \n", "4.0 | \n", "155110368 | \n", "- | \n", "106 | \n", "106 | \n", "ENSG00000175756 | \n", "... | \n", "- | \n", "3479 | \n", "3480 | \n", "ENSG00000206651 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "4515 | \n", "
5421 | \n", "0 | \n", "1.000000 | \n", "NaN | \n", "0.0 | \n", "0.0 | \n", "0 | \n", "- | \n", "106 | \n", "106 | \n", "ENSG00000175756 | \n", "... | \n", "- | \n", "106 | \n", "106 | \n", "ENSG00000175756 | \n", "protein_coding | \n", "Q9NWT8 | \n", "0.000000 | \n", "199.0 | \n", "chr1 | \n", "4427 | \n", "
7227 | \n", "154818436 | \n", "0.962509 | \n", "NaN | \n", "65.0 | \n", "4.0 | \n", "154839067 | \n", "- | \n", "106 | \n", "106 | \n", "ENSG00000175756 | \n", "... | \n", "+ | \n", "3464 | \n", "3464 | \n", "ENSG00000160785 | \n", "protein_coding | \n", "E9PGQ0 | \n", "0.000000 | \n", "322.0 | \n", "chr1 | \n", "4491 | \n", "
5 rows × 26 columns
\n", "\n", " | ENSG00000173876 | \n", "ENSG00000015171 | \n", "ENSG00000151240 | \n", "ENSG00000201861 | \n", "ENSG00000263511 | \n", "ENSG00000180525 | \n", "ENSG00000107929 | \n", "ENSG00000107937 | \n", "ENSG00000148377 | \n", "ENSG00000067064 | \n", "... | \n", "ENSG00000127884 | \n", "ENSG00000265395 | \n", "ENSG00000148832 | \n", "ENSG00000203772 | \n", "ENSG00000148824 | \n", "ENSG00000254536 | \n", "ENSG00000214279 | \n", "ENSG00000130649 | \n", "ENSG00000171772 | \n", "ENSG00000225899 | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Gene stable ID | \n", "\n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " | \n", " |
ENSG00000173876 | \n", "0 | \n", "1 | \n", "36 | \n", "80 | \n", "37 | \n", "37 | \n", "22 | \n", "19 | \n", "18 | \n", "18 | \n", "... | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "3 | \n", "5 | \n", "6 | \n", "6 | \n", "
ENSG00000015171 | \n", "1 | \n", "0 | \n", "39 | \n", "1 | \n", "40 | \n", "40 | \n", "26 | \n", "25 | \n", "24 | \n", "22 | \n", "... | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "3 | \n", "4 | \n", "4 | \n", "
ENSG00000151240 | \n", "36 | \n", "39 | \n", "0 | \n", "48 | \n", "1 | \n", "1 | \n", "45 | \n", "38 | \n", "38 | \n", "39 | \n", "... | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "
ENSG00000201861 | \n", "80 | \n", "1 | \n", "48 | \n", "0 | \n", "51 | \n", "49 | \n", "28 | \n", "26 | \n", "25 | \n", "24 | \n", "... | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "
ENSG00000263511 | \n", "37 | \n", "40 | \n", "1 | \n", "51 | \n", "0 | \n", "1 | \n", "38 | \n", "35 | \n", "35 | \n", "36 | \n", "... | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "2 | \n", "2 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
ENSG00000254536 | \n", "3 | \n", "2 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "... | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "0 | \n", "1 | \n", "1 | \n", "1 | \n", "77 | \n", "
ENSG00000214279 | \n", "3 | \n", "2 | \n", "1 | \n", "2 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "... | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "0 | \n", "1 | \n", "1 | \n", "1 | \n", "
ENSG00000130649 | \n", "5 | \n", "3 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "... | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "0 | \n", "1 | \n", "1 | \n", "
ENSG00000171772 | \n", "6 | \n", "4 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "... | \n", "100 | \n", "100 | \n", "2 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "0 | \n", "2 | \n", "
ENSG00000225899 | \n", "6 | \n", "4 | \n", "2 | \n", "2 | \n", "2 | \n", "2 | \n", "1 | \n", "1 | \n", "1 | \n", "1 | \n", "... | \n", "71 | \n", "71 | \n", "74 | \n", "84 | \n", "77 | \n", "77 | \n", "1 | \n", "1 | \n", "2 | \n", "0 | \n", "
968 rows × 968 columns
\n", "\n", " | tss_tss | \n", "exp | \n", "exp_georg | \n", "hi-c-rao | \n", "hi-c-rao-common_elements | \n", "tes_tes | \n", "strand_x | \n", "gene_order_tss_x | \n", "gene_order_tes_x | \n", "Gene stable ID_x | \n", "... | \n", "gene_order_tss_y | \n", "gene_order_tes_y | \n", "Gene stable ID_y | \n", "Gene type_y | \n", "Uniprot_dc_y | \n", "dc_y | \n", "seq_length_y | \n", "chrom_y | \n", "gene_occurence_frequency_y | \n", "gene_freq | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | \n", "72050381 | \n", "0.122194 | \n", "NaN | \n", "3.0 | \n", "3.0 | \n", "72322032 | \n", "- | \n", "3445 | \n", "3445 | \n", "ENSG00000143622 | \n", "... | \n", "2135 | \n", "2134 | \n", "ENSG00000233008 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "7321 | \n", "15163 | \n", "
2 | \n", "16027556 | \n", "0.178424 | \n", "NaN | \n", "20.0 | \n", "4.0 | \n", "15874301 | \n", "- | \n", "1947 | \n", "1945 | \n", "ENSG00000172380 | \n", "... | \n", "2135 | \n", "2134 | \n", "ENSG00000233008 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "7321 | \n", "15836 | \n", "
3 | \n", "77436353 | \n", "0.061727 | \n", "NaN | \n", "1.0 | \n", "3.0 | \n", "77163358 | \n", "- | \n", "247 | \n", "247 | \n", "ENSG00000069812 | \n", "... | \n", "2135 | \n", "2134 | \n", "ENSG00000233008 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "7321 | \n", "15498 | \n", "
4 | \n", "117251428 | \n", "0.056937 | \n", "NaN | \n", "1.0 | \n", "3.0 | \n", "117463736 | \n", "- | \n", "4361 | \n", "4360 | \n", "ENSG00000081248 | \n", "... | \n", "2135 | \n", "2134 | \n", "ENSG00000233008 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "7321 | \n", "15825 | \n", "
5 | \n", "72758307 | \n", "0.196935 | \n", "NaN | \n", "1.0 | \n", "2.0 | \n", "73049950 | \n", "+ | \n", "3487 | \n", "3487 | \n", "ENSG00000132702 | \n", "... | \n", "2135 | \n", "2134 | \n", "ENSG00000233008 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "7321 | \n", "15631 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
3261627 | \n", "69438229 | \n", "0.806037 | \n", "NaN | \n", "8.0 | \n", "4.0 | \n", "69701689 | \n", "+ | \n", "3760 | \n", "3766 | \n", "ENSG00000185630 | \n", "... | \n", "2360 | \n", "2363 | \n", "ENSG00000152078 | \n", "protein_coding | \n", "Q96MV1 | \n", "0.0 | \n", "263.0 | \n", "chr1 | \n", "8386 | \n", "16750 | \n", "
3261631 | \n", "111087060 | \n", "0.277369 | \n", "NaN | \n", "6.0 | \n", "3.0 | \n", "110988571 | \n", "- | \n", "4540 | \n", "4539 | \n", "ENSG00000196550 | \n", "... | \n", "2360 | \n", "2363 | \n", "ENSG00000152078 | \n", "protein_coding | \n", "Q96MV1 | \n", "0.0 | \n", "263.0 | \n", "chr1 | \n", "8386 | \n", "16032 | \n", "
3261632 | \n", "91258483 | \n", "0.779141 | \n", "NaN | \n", "2.0 | \n", "4.0 | \n", "91223771 | \n", "+ | \n", "4204 | \n", "4204 | \n", "ENSG00000157181 | \n", "... | \n", "2360 | \n", "2363 | \n", "ENSG00000152078 | \n", "protein_coding | \n", "Q96MV1 | \n", "0.0 | \n", "263.0 | \n", "chr1 | \n", "8386 | \n", "16531 | \n", "
3261633 | \n", "66060614 | \n", "0.526012 | \n", "NaN | \n", "3.0 | \n", "4.0 | \n", "65973702 | \n", "- | \n", "3680 | \n", "3679 | \n", "ENSG00000158850 | \n", "... | \n", "2360 | \n", "2363 | \n", "ENSG00000152078 | \n", "protein_coding | \n", "Q96MV1 | \n", "0.0 | \n", "263.0 | \n", "chr1 | \n", "8386 | \n", "16928 | \n", "
3261634 | \n", "59544041 | \n", "0.116555 | \n", "NaN | \n", "3.0 | \n", "3.0 | \n", "59602279 | \n", "+ | \n", "1159 | \n", "1160 | \n", "ENSG00000116819 | \n", "... | \n", "2360 | \n", "2363 | \n", "ENSG00000152078 | \n", "protein_coding | \n", "Q96MV1 | \n", "0.0 | \n", "263.0 | \n", "chr1 | \n", "8386 | \n", "16220 | \n", "
2926044 rows × 27 columns
\n", "\n", " | index | \n", "tss_tss | \n", "exp | \n", "exp_georg | \n", "hi-c-rao | \n", "hi-c-rao-common_elements | \n", "tes_tes | \n", "strand_x | \n", "gene_order_tss_x | \n", "gene_order_tes_x | \n", "... | \n", "gene_order_tes_y | \n", "Gene stable ID_y | \n", "Gene type_y | \n", "Uniprot_dc_y | \n", "dc_y | \n", "seq_length_y | \n", "chrom_y | \n", "gene_occurence_frequency_y | \n", "gene_freq | \n", "auc | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2127 | \n", "ENSG00000002919 | \n", "26363042 | \n", "0.755927 | \n", "0.687850 | \n", "76.0 | \n", "4.0 | \n", "26361720 | \n", "+ | \n", "1964 | \n", "1964 | \n", "... | \n", "2646 | \n", "ENSG00000167851 | \n", "protein_coding | \n", "Q9UGN4 | \n", "0.073579 | \n", "299.0 | \n", "chr17 | \n", "1562 | \n", "3122 | \n", "0.973126 | \n", "
3528 | \n", "ENSG00000002919 | \n", "31664590 | \n", "0.742490 | \n", "NaN | \n", "36.0 | \n", "4.0 | \n", "31644396 | \n", "+ | \n", "1964 | \n", "1964 | \n", "... | \n", "608 | \n", "ENSG00000175061 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr17 | \n", "1563 | \n", "3123 | \n", "0.973126 | \n", "
3531 | \n", "ENSG00000002919 | \n", "39984309 | \n", "0.153997 | \n", "NaN | \n", "53.0 | \n", "4.0 | \n", "40027175 | \n", "+ | \n", "1964 | \n", "1964 | \n", "... | \n", "394 | \n", "ENSG00000179148 | \n", "protein_coding | \n", "J3KPH2 | \n", "0.113033 | \n", "867.0 | \n", "chr17 | \n", "1562 | \n", "3122 | \n", "0.973126 | \n", "
3534 | \n", "ENSG00000002919 | \n", "33788230 | \n", "0.926757 | \n", "0.276618 | \n", "45.0 | \n", "4.0 | \n", "33764760 | \n", "+ | \n", "1964 | \n", "1964 | \n", "... | \n", "2977 | \n", "ENSG00000183684 | \n", "protein_coding | \n", "E9PB61 | \n", "0.621212 | \n", "264.0 | \n", "chr17 | \n", "1562 | \n", "3122 | \n", "0.973126 | \n", "
3537 | \n", "ENSG00000002919 | \n", "40064323 | \n", "0.423555 | \n", "NaN | \n", "39.0 | \n", "4.0 | \n", "40073940 | \n", "+ | \n", "1964 | \n", "1964 | \n", "... | \n", "388 | \n", "ENSG00000179593 | \n", "protein_coding | \n", "O15296 | \n", "0.000000 | \n", "676.0 | \n", "chr17 | \n", "1562 | \n", "3122 | \n", "0.973126 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
2249259 | \n", "ENSG00000271605 | \n", "17525962 | \n", "0.572308 | \n", "NaN | \n", "74.0 | \n", "4.0 | \n", "17493119 | \n", "+ | \n", "2444 | \n", "2444 | \n", "... | \n", "1913 | \n", "ENSG00000108433 | \n", "protein_coding | \n", "I3NI02 | \n", "0.077821 | \n", "257.0 | \n", "chr17 | \n", "1561 | \n", "3120 | \n", "0.986747 | \n", "
2249262 | \n", "ENSG00000271605 | \n", "56446443 | \n", "0.268160 | \n", "NaN | \n", "49.0 | \n", "4.0 | \n", "56448304 | \n", "+ | \n", "2444 | \n", "2444 | \n", "... | \n", "387 | \n", "ENSG00000132518 | \n", "protein_coding | \n", "Q02846 | \n", "0.035358 | \n", "1103.0 | \n", "chr17 | \n", "1562 | \n", "3121 | \n", "0.986747 | \n", "
2249265 | \n", "ENSG00000271605 | \n", "52850567 | \n", "0.063841 | \n", "NaN | \n", "13.0 | \n", "4.0 | \n", "52498895 | \n", "+ | \n", "2444 | \n", "2444 | \n", "... | \n", "496 | \n", "ENSG00000007174 | \n", "protein_coding | \n", "Q9NYC9 | \n", "0.000000 | \n", "4486.0 | \n", "chr17 | \n", "1558 | \n", "3117 | \n", "0.986747 | \n", "
2249661 | \n", "ENSG00000271605 | \n", "55483324 | \n", "0.806578 | \n", "NaN | \n", "40.0 | \n", "4.0 | \n", "55589733 | \n", "+ | \n", "2444 | \n", "2444 | \n", "... | \n", "434 | \n", "ENSG00000141506 | \n", "protein_coding | \n", "Q8WYR1 | \n", "0.167045 | \n", "880.0 | \n", "chr17 | \n", "1564 | \n", "3123 | \n", "0.986747 | \n", "
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407403 rows × 28 columns
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100 rows × 22 columns
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1679614 | \n", "246237 | \n", "0.910353 | \n", "0.892779 | \n", "1.0 | \n", "- | \n", "1701 | \n", "1700 | \n", "ENSG00000110047 | \n", "protein_coding | \n", "A0A024R571 | \n", "... | \n", "chr11 | \n", "- | \n", "1731 | \n", "1729 | \n", "ENSG00000162298 | \n", "protein_coding | \n", "Q86TM6 | \n", "0.296596 | \n", "617.0 | \n", "chr11 | \n", "
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1008016 rows × 22 columns
\n", "\n", " | Gene stable ID | \n", "ENSG00000173876 | \n", "ENSG00000015171 | \n", "ENSG00000151240 | \n", "ENSG00000201861 | \n", "ENSG00000263511 | \n", "ENSG00000180525 | \n", "ENSG00000107929 | \n", "ENSG00000107937 | \n", "ENSG00000148377 | \n", "... | \n", "ENSG00000127884 | \n", "ENSG00000265395 | \n", "ENSG00000148832 | \n", "ENSG00000203772 | \n", "ENSG00000148824 | \n", "ENSG00000254536 | \n", "ENSG00000214279 | \n", "ENSG00000130649 | \n", "ENSG00000171772 | \n", "ENSG00000225899 | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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3 | \n", "ENSG00000201861 | \n", "62.0 | \n", "114.0 | \n", "43.0 | \n", "0.0 | \n", "49.0 | \n", "49.0 | \n", "26.0 | \n", "22.0 | \n", "23.0 | \n", "... | \n", "0.0 | \n", "0.0 | \n", "0.0 | \n", "2.0 | \n", "0.0 | \n", "0.0 | \n", "1.0 | \n", "2.0 | \n", "2.0 | \n", "2.0 | \n", "
4 | \n", "ENSG00000263511 | \n", "35.0 | \n", "35.0 | \n", "233.0 | \n", "49.0 | \n", "0.0 | \n", "1.0 | \n", "40.0 | \n", "29.0 | \n", "33.0 | \n", "... | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "2.0 | \n", "1.0 | \n", "2.0 | \n", "3.0 | \n", "
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963 | \n", "ENSG00000254536 | \n", "3.0 | \n", "2.0 | \n", "1.0 | \n", "0.0 | \n", "1.0 | \n", "1.0 | \n", "2.0 | \n", "2.0 | \n", "2.0 | \n", "... | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "0.0 | \n", "182.0 | \n", "87.0 | \n", "66.0 | \n", "55.0 | \n", "
964 | \n", "ENSG00000214279 | \n", "6.0 | \n", "2.0 | \n", "1.0 | \n", "1.0 | \n", "2.0 | \n", "2.0 | \n", "0.0 | \n", "0.0 | \n", "0.0 | \n", "... | \n", "139.0 | \n", "139.0 | \n", "151.0 | \n", "1.0 | \n", "182.0 | \n", "182.0 | \n", "0.0 | \n", "188.0 | \n", "159.0 | \n", "113.0 | \n", "
965 | \n", "ENSG00000130649 | \n", "6.0 | \n", "2.0 | \n", "1.0 | \n", "2.0 | \n", "1.0 | \n", "2.0 | \n", "1.0 | \n", "1.0 | \n", "1.0 | \n", "... | \n", "71.0 | \n", "71.0 | \n", "76.0 | \n", "168.0 | \n", "87.0 | \n", "87.0 | \n", "188.0 | \n", "0.0 | \n", "267.0 | \n", "146.0 | \n", "
966 | \n", "ENSG00000171772 | \n", "7.0 | \n", "2.0 | \n", "3.0 | \n", "2.0 | \n", "2.0 | \n", "2.0 | \n", "2.0 | \n", "1.0 | \n", "1.0 | \n", "... | \n", "67.0 | \n", "67.0 | \n", "66.0 | \n", "173.0 | \n", "66.0 | \n", "66.0 | \n", "159.0 | \n", "267.0 | \n", "0.0 | \n", "154.0 | \n", "
967 | \n", "ENSG00000225899 | \n", "11.0 | \n", "6.0 | \n", "3.0 | \n", "2.0 | \n", "3.0 | \n", "3.0 | \n", "2.0 | \n", "3.0 | \n", "2.0 | \n", "... | \n", "51.0 | \n", "51.0 | \n", "50.0 | \n", "88.0 | \n", "55.0 | \n", "55.0 | \n", "113.0 | \n", "146.0 | \n", "154.0 | \n", "0.0 | \n", "
968 rows × 969 columns
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2 | \n", "ENSG00000167393 | \n", "1286.0 | \n", "1286.0 | \n", "0.0 | \n", "1286.0 | \n", "1296.0 | \n", "1296.0 | \n", "1296.0 | \n", "1298.0 | \n", "1341.0 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "
3 | \n", "ENSG00000185960 | \n", "1286.0 | \n", "1286.0 | \n", "1286.0 | \n", "0.0 | \n", "1300.0 | \n", "1300.0 | \n", "1300.0 | \n", "1302.0 | \n", "1341.0 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "
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1026 | \n", "ENSG00000168939 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.0 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "
1027 | \n", "ENSG00000124333 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.0 | \n", "NaN | \n", "NaN | \n", "
1028 | \n", "ENSG00000124334 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.0 | \n", "NaN | \n", "
1029 | \n", "ENSG00000227159 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.0 | \n", "
1030 rows × 1031 columns
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ENSG00000174669_ENSG00000174669 | \n", "0 | \n", "1.000000 | \n", "NaN | \n", "0.0 | \n", "- | \n", "1828 | \n", "1827 | \n", "ENSG00000174669 | \n", "protein_coding | \n", "Q14542 | \n", "... | \n", "chr11 | \n", "- | \n", "1828 | \n", "1827 | \n", "ENSG00000174669 | \n", "protein_coding | \n", "Q14542 | \n", "0.000000 | \n", "456.0 | \n", "chr11 | \n", "
ENSG00000174669_ENSG00000183340 | \n", "30017774 | \n", "0.863495 | \n", "NaN | \n", "274.0 | \n", "+ | \n", "2591 | \n", "2593 | \n", "ENSG00000183340 | \n", "protein_coding | \n", "Q9Y4A0 | \n", "... | \n", "chr11 | \n", "- | \n", "1828 | \n", "1827 | \n", "ENSG00000174669 | \n", "protein_coding | \n", "Q14542 | \n", "0.000000 | \n", "456.0 | \n", "chr11 | \n", "
ENSG00000174669_ENSG00000182791 | \n", "220849 | \n", "0.688515 | \n", "NaN | \n", "401.0 | \n", "- | \n", "1847 | \n", "1847 | \n", "ENSG00000182791 | \n", "protein_coding | \n", "Q9NVE4 | \n", "... | \n", "chr11 | \n", "- | \n", "1828 | \n", "1827 | \n", "ENSG00000174669 | \n", "protein_coding | \n", "Q14542 | \n", "0.000000 | \n", "456.0 | \n", "chr11 | \n", "
ENSG00000174669_ENSG00000132275 | \n", "59768598 | \n", "0.939615 | \n", "NaN | \n", "404.0 | \n", "- | \n", "384 | \n", "384 | \n", "ENSG00000132275 | \n", "protein_coding | \n", "O43159 | \n", "... | \n", "chr11 | \n", "- | \n", "1828 | \n", "1827 | \n", "ENSG00000174669 | \n", "protein_coding | \n", "Q14542 | \n", "0.000000 | \n", "456.0 | \n", "chr11 | \n", "
ENSG00000174669_ENSG00000168496 | \n", "4579304 | \n", "0.887136 | \n", "NaN | \n", "4489.0 | \n", "+ | \n", "1527 | \n", "1527 | \n", "ENSG00000168496 | \n", "protein_coding | \n", "P39748 | \n", "... | \n", "chr11 | \n", "- | \n", "1828 | \n", "1827 | \n", "ENSG00000174669 | \n", "protein_coding | \n", "Q14542 | \n", "0.000000 | \n", "456.0 | \n", "chr11 | \n", "
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ENSG00000239306_ENSG00000267940 | \n", "60413328 | \n", "0.860745 | \n", "NaN | \n", "NaN | \n", "- | \n", "366 | \n", "366 | \n", "ENSG00000267940 | \n", "NaN | \n", "NaN | \n", "... | \n", "chr11 | \n", "+ | \n", "1850 | \n", "1850 | \n", "ENSG00000239306 | \n", "protein_coding | \n", "Q96PK6 | \n", "0.170404 | \n", "669.0 | \n", "chr11 | \n", "
ENSG00000239306_ENSG00000254694 | \n", "59592446 | \n", "0.722093 | \n", "NaN | \n", "NaN | \n", "- | \n", "3224 | \n", "3225 | \n", "ENSG00000254694 | \n", "NaN | \n", "NaN | \n", "... | \n", "chr11 | \n", "+ | \n", "1850 | \n", "1850 | \n", "ENSG00000239306 | \n", "protein_coding | \n", "Q96PK6 | \n", "0.170404 | \n", "669.0 | \n", "chr11 | \n", "
ENSG00000239306_ENSG00000173715 | \n", "127869 | \n", "0.934376 | \n", "NaN | \n", "446.0 | \n", "+ | \n", "1856 | \n", "1858 | \n", "ENSG00000173715 | \n", "protein_coding | \n", "A0A2U3TZP7 | \n", "... | \n", "chr11 | \n", "+ | \n", "1850 | \n", "1850 | \n", "ENSG00000239306 | \n", "protein_coding | \n", "Q96PK6 | \n", "0.170404 | \n", "669.0 | \n", "chr11 | \n", "
ENSG00000239306_ENSG00000166086 | \n", "67452489 | \n", "0.909951 | \n", "NaN | \n", "403.0 | \n", "+ | \n", "3337 | \n", "3339 | \n", "ENSG00000166086 | \n", "protein_coding | \n", "Q9BX67 | \n", "... | \n", "chr11 | \n", "+ | \n", "1850 | \n", "1850 | \n", "ENSG00000239306 | \n", "protein_coding | \n", "Q96PK6 | \n", "0.170404 | \n", "669.0 | \n", "chr11 | \n", "
ENSG00000239306_ENSG00000239306 | \n", "0 | \n", "1.000000 | \n", "NaN | \n", "0.0 | \n", "+ | \n", "1850 | \n", "1850 | \n", "ENSG00000239306 | \n", "protein_coding | \n", "Q96PK6 | \n", "... | \n", "chr11 | \n", "+ | \n", "1850 | \n", "1850 | \n", "ENSG00000239306 | \n", "protein_coding | \n", "Q96PK6 | \n", "0.170404 | \n", "669.0 | \n", "chr11 | \n", "
1679616 rows × 22 columns
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ENSG00000183340_ENSG00000183340 | \n", "0 | \n", "1.000000 | \n", "NaN | \n", "0.0 | \n", "+ | \n", "2591 | \n", "2593 | \n", "ENSG00000183340 | \n", "protein_coding | \n", "Q9Y4A0 | \n", "... | \n", "chr11 | \n", "+ | \n", "2591 | \n", "2593 | \n", "ENSG00000183340 | \n", "protein_coding | \n", "Q9Y4A0 | \n", "0.000000 | \n", "524.0 | \n", "chr11 | \n", "
ENSG00000149231_ENSG00000183340 | \n", "32 | \n", "0.996508 | \n", "NaN | \n", "785.0 | \n", "+ | \n", "2591 | \n", "2593 | \n", "ENSG00000183340 | \n", "protein_coding | \n", "Q9Y4A0 | \n", "... | \n", "chr11 | \n", "- | \n", "2590 | \n", "2590 | \n", "ENSG00000149231 | \n", "protein_coding | \n", "Q8N4S0 | \n", "0.540441 | \n", "544.0 | \n", "chr11 | \n", "
ENSG00000184384_ENSG00000183340 | \n", "46793 | \n", "0.935457 | \n", "NaN | \n", "785.0 | \n", "+ | \n", "2591 | \n", "2593 | \n", "ENSG00000183340 | \n", "protein_coding | \n", "Q9Y4A0 | \n", "... | \n", "chr11 | \n", "- | \n", "2589 | \n", "2587 | \n", "ENSG00000184384 | \n", "protein_coding | \n", "Q8IZL2 | \n", "0.416955 | \n", "1156.0 | \n", "chr11 | \n", "
ENSG00000087053_ENSG00000183340 | \n", "464673 | \n", "0.983718 | \n", "NaN | \n", "774.0 | \n", "+ | \n", "2591 | \n", "2593 | \n", "ENSG00000183340 | \n", "protein_coding | \n", "Q9Y4A0 | \n", "... | \n", "chr11 | \n", "- | \n", "2585 | \n", "2584 | \n", "ENSG00000087053 | \n", "protein_coding | \n", "Q13614 | \n", "0.132193 | \n", "643.0 | \n", "chr11 | \n", "
4 rows × 22 columns
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", "0 | \n", "1.000000 | \n", "NaN | \n", "0.0 | \n", "+ | \n", "1996 | \n", "1998 | \n", "ENSG00000229956 | \n", "NaN | \n", "NaN | \n", "... | \n", "chr1 | \n", "+ | \n", "1996 | \n", "1998 | \n", "ENSG00000229956 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "
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2 | \n", "87442348 | \n", "0.217594 | \n", "NaN | \n", "NaN | \n", "+ | \n", "3558 | \n", "3558 | \n", "ENSG00000231434 | \n", "NaN | \n", "NaN | \n", "... | \n", "chr1 | \n", "+ | \n", "1996 | \n", "1998 | \n", "ENSG00000229956 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "
3 | \n", "85979439 | \n", "0.388890 | \n", "NaN | \n", "NaN | \n", "- | \n", "3511 | \n", "3511 | \n", "ENSG00000237842 | \n", "NaN | \n", "NaN | \n", "... | \n", "chr1 | \n", "+ | \n", "1996 | \n", "1998 | \n", "ENSG00000229956 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "
4 | \n", "44254636 | \n", "0.197412 | \n", "NaN | \n", "NaN | \n", "+ | \n", "889 | \n", "889 | \n", "ENSG00000204160 | \n", "protein_coding | \n", "Q9NUE0 | \n", "... | \n", "chr1 | \n", "+ | \n", "1996 | \n", "1998 | \n", "ENSG00000229956 | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "chr1 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
597524 | \n", "71670055 | \n", "0.618089 | \n", "NaN | \n", "6.0 | \n", "- | \n", "861 | \n", "860 | \n", "ENSG00000102302 | \n", "protein_coding | \n", "P98174 | \n", "... | \n", "chrX | \n", "- | \n", "1829 | \n", "1829 | \n", "ENSG00000198354 | \n", "protein_coding | \n", "Q5VW00 | \n", "0.103672 | \n", "463.0 | \n", "chrX | \n", "
597525 | \n", "4005672 | \n", "0.119630 | \n", "NaN | \n", "112.0 | \n", "+ | \n", "1872 | \n", "1872 | \n", "ENSG00000134594 | \n", "protein_coding | \n", "Q14088 | \n", "... | \n", "chrX | \n", "- | \n", "1829 | \n", "1829 | \n", "ENSG00000198354 | \n", "protein_coding | \n", "Q5VW00 | \n", "0.103672 | \n", "463.0 | \n", "chrX | \n", "
597526 | \n", "113259670 | \n", "0.042676 | \n", "NaN | \n", "3.0 | \n", "+ | \n", "142 | \n", "143 | \n", "ENSG00000101916 | \n", "protein_coding | \n", "Q9NR97 | \n", "... | \n", "chrX | \n", "- | \n", "1829 | \n", "1829 | \n", "ENSG00000198354 | \n", "protein_coding | \n", "Q5VW00 | \n", "0.103672 | \n", "463.0 | \n", "chrX | \n", "
597527 | \n", "76893236 | \n", "0.260073 | \n", "NaN | \n", "NaN | \n", "+ | \n", "708 | \n", "707 | \n", "ENSG00000270012 | \n", "NaN | \n", "NaN | \n", "... | \n", "chrX | \n", "- | \n", "1829 | \n", "1829 | \n", "ENSG00000198354 | \n", "protein_coding | \n", "Q5VW00 | \n", "0.103672 | \n", "463.0 | \n", "chrX | \n", "
597528 | \n", "0 | \n", "1.000000 | \n", "NaN | \n", "0.0 | \n", "- | \n", "1829 | \n", "1829 | \n", "ENSG00000198354 | \n", "protein_coding | \n", "Q5VW00 | \n", "... | \n", "chrX | \n", "- | \n", "1829 | \n", "1829 | \n", "ENSG00000198354 | \n", "protein_coding | \n", "Q5VW00 | \n", "0.103672 | \n", "463.0 | \n", "chrX | \n", "
30288333 rows × 22 columns
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
342895 | \n", "105160442 | \n", "0.950081 | \n", "0.051895 | \n", "119.0 | \n", "- | \n", "76 | \n", "76 | \n", "ENSG00000177830 | \n", "protein_coding | \n", "Q9BWS9 | \n", "... | \n", "chr11 | \n", "+ | \n", "2699 | \n", "2701 | \n", "ENSG00000149313 | \n", "protein_coding | \n", "Q9NRN7 | \n", "0.000000 | \n", "309.0 | \n", "chr11 | \n", "
343297 | \n", "105838535 | \n", "0.980966 | \n", "0.774490 | \n", "119.0 | \n", "+ | \n", "15 | \n", "16 | \n", "ENSG00000185627 | \n", "protein_coding | \n", "A0A087WUL9 | \n", "... | \n", "chr11 | \n", "+ | \n", "2699 | \n", "2701 | \n", "ENSG00000149313 | \n", "protein_coding | \n", "Q9NRN7 | \n", "0.000000 | \n", "309.0 | \n", "chr11 | \n", "
1275528 | \n", "105328086 | \n", "0.856056 | \n", "0.106404 | \n", "119.0 | \n", "+ | \n", "2699 | \n", "2701 | \n", "ENSG00000149313 | \n", "protein_coding | \n", "Q9NRN7 | \n", "... | \n", "chr11 | \n", "+ | \n", "59 | \n", "59 | \n", "ENSG00000177156 | \n", "protein_coding | \n", "P37837 | \n", "0.000000 | \n", "337.0 | \n", "chr11 | \n", "
343381 | \n", "105232971 | \n", "0.889197 | \n", "0.070446 | \n", "119.0 | \n", "- | \n", "73 | \n", "72 | \n", "ENSG00000177700 | \n", "protein_coding | \n", "P62875 | \n", "... | \n", "chr11 | \n", "+ | \n", "2699 | \n", "2701 | \n", "ENSG00000149313 | \n", "protein_coding | \n", "Q9NRN7 | \n", "0.000000 | \n", "309.0 | \n", "chr11 | \n", "
343326 | \n", "105867990 | \n", "0.981978 | \n", "0.226579 | \n", "119.0 | \n", "+ | \n", "12 | \n", "14 | \n", "ENSG00000177963 | \n", "protein_coding | \n", "Q9NPQ8 | \n", "... | \n", "chr11 | \n", "+ | \n", "2699 | \n", "2701 | \n", "ENSG00000149313 | \n", "protein_coding | \n", "Q9NRN7 | \n", "0.000000 | \n", "309.0 | \n", "chr11 | \n", "
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355214 | \n", "1066522 | \n", "0.936410 | \n", "0.991767 | \n", "47941.0 | \n", "+ | \n", "146 | \n", "147 | \n", "ENSG00000110651 | \n", "protein_coding | \n", "A6NMH8 | \n", "... | \n", "chr11 | \n", "- | \n", "87 | \n", "87 | \n", "ENSG00000078902 | \n", "protein_coding | \n", "Q9H0E2 | \n", "0.000000 | \n", "274.0 | \n", "chr11 | \n", "
469661 | \n", "1090177 | \n", "0.993863 | \n", "0.884164 | \n", "53696.0 | \n", "+ | \n", "509 | \n", "511 | \n", "ENSG00000198730 | \n", "protein_coding | \n", "Q6PD62 | \n", "... | \n", "chr11 | \n", "+ | \n", "530 | \n", "532 | \n", "ENSG00000170242 | \n", "protein_coding | \n", "Q96K76 | \n", "0.130182 | \n", "1375.0 | \n", "chr11 | \n", "
470153 | \n", "1032482 | \n", "0.994699 | \n", "0.938420 | \n", "53696.0 | \n", "- | \n", "511 | \n", "509 | \n", "ENSG00000110321 | \n", "protein_coding | \n", "D3DQV9 | \n", "... | \n", "chr11 | \n", "+ | \n", "530 | \n", "532 | \n", "ENSG00000170242 | \n", "protein_coding | \n", "Q96K76 | \n", "0.130182 | \n", "1375.0 | \n", "chr11 | \n", "
1297658 | \n", "1032482 | \n", "0.994699 | \n", "0.938420 | \n", "53696.0 | \n", "+ | \n", "530 | \n", "532 | \n", "ENSG00000170242 | \n", "protein_coding | \n", "Q96K76 | \n", "... | \n", "chr11 | \n", "- | \n", "511 | \n", "509 | \n", "ENSG00000110321 | \n", "protein_coding | \n", "D3DQV9 | \n", "0.126792 | \n", "907.0 | \n", "chr11 | \n", "
660026 | \n", "1090177 | \n", "0.993863 | \n", "0.884164 | \n", "53696.0 | \n", "+ | \n", "530 | \n", "532 | \n", "ENSG00000170242 | \n", "protein_coding | \n", "Q96K76 | \n", "... | \n", "chr11 | \n", "+ | \n", "509 | \n", "511 | \n", "ENSG00000198730 | \n", "protein_coding | \n", "Q6PD62 | \n", "0.240409 | \n", "1173.0 | \n", "chr11 | \n", "
59780 rows × 22 columns
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---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.928998 | \n", "{0.0: 0.4647971360381815, 1.0: 0.9644988066825... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1676 | \n", "1 | \n", "0.456546 | \n", "0.418631 | \n", "0.047458 | \n", "ENSG00000116824 | \n", "
15 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.586471 | \n", "{0.0: 0.2935294117647082, 1.0: 0.7932352941176... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1700 | \n", "1 | \n", "0.460544 | \n", "0.434903 | \n", "0.033081 | \n", "ENSG00000171502 | \n", "
28 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.918846 | \n", "{0.0: 0.45975855130785187, 1.0: 0.959423205902... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1491 | \n", "1 | \n", "0.742133 | \n", "0.667423 | \n", "0.060319 | \n", "ENSG00000160710 | \n", "
74 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.970571 | \n", "{0.0: 0.4855855855855861, 1.0: 0.9852852852853... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1665 | \n", "1 | \n", "0.520593 | \n", "0.469057 | \n", "0.038791 | \n", "ENSG00000006555 | \n", "
81 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.552479 | \n", "{0.0: 0.2765614938828101, 1.0: 0.7762395363812... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1553 | \n", "1 | \n", "0.472553 | \n", "0.437655 | \n", "0.036008 | \n", "ENSG00000118298 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
1771 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.943408 | \n", "{0.0: 0.47200481637567415, 1.0: 0.971703792895... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1661 | \n", "1 | \n", "0.729769 | \n", "0.655523 | \n", "0.070410 | \n", "ENSG00000162396 | \n", "
1774 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.728024 | \n", "{0.0: 0.3643067846607613, 1.0: 0.8640117994100... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1695 | \n", "1 | \n", "0.597605 | \n", "0.531588 | \n", "0.050947 | \n", "ENSG00000177606 | \n", "
1788 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.586650 | \n", "{0.0: 0.2936313533374198, 1.0: 0.7933251684017... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1633 | \n", "1 | \n", "0.624274 | \n", "0.562235 | \n", "0.053714 | \n", "ENSG00000211451 | \n", "
1797 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.981503 | \n", "{0.0: 0.4910404624277586, 1.0: 0.9907514450867... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1730 | \n", "1 | \n", "0.350813 | \n", "0.355306 | \n", "0.046997 | \n", "ENSG00000143702 | \n", "
1801 | \n", "chr1 | \n", "1806 | \n", "2 | \n", "0.987273 | \n", "{0.0: 0.49393939393939723, 1.0: 0.993636363636... | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "1650 | \n", "1 | \n", "0.508222 | \n", "0.467589 | \n", "0.027952 | \n", "ENSG00000174059 | \n", "
171 rows × 12 columns
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | \n", "chr11 | \n", "1004 | \n", "2.0 | \n", "0.603357 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "566 | \n", "2 | \n", "0.818331 | \n", "0.709948 | \n", "0.077252 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.863074 | \n", "
1 | \n", "chr11 | \n", "1004 | \n", "1.0 | \n", "0.950000 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "480 | \n", "1 | \n", "0.711796 | \n", "0.638367 | \n", "0.072380 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.975000 | \n", "
2 | \n", "chr11 | \n", "1004 | \n", "1.0 | \n", "0.990826 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "436 | \n", "1 | \n", "0.680995 | \n", "0.613632 | \n", "0.075320 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.995413 | \n", "
3 | \n", "chr11 | \n", "1004 | \n", "2.0 | \n", "0.964930 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "499 | \n", "2 | \n", "0.690213 | \n", "0.630627 | \n", "0.070869 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.994990 | \n", "
4 | \n", "chr11 | \n", "1004 | \n", "5.0 | \n", "0.937400 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "623 | \n", "2 | \n", "0.712888 | \n", "0.625489 | \n", "0.079132 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.981541 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
999 | \n", "chr11 | \n", "1004 | \n", "2.0 | \n", "0.074297 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "498 | \n", "1 | \n", "0.061497 | \n", "0.109356 | \n", "0.028743 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.537149 | \n", "
1000 | \n", "chr11 | \n", "1004 | \n", "6.0 | \n", "0.426445 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "571 | \n", "2 | \n", "0.264574 | \n", "0.274264 | \n", "0.040111 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.834501 | \n", "
1001 | \n", "chr11 | \n", "1004 | \n", "6.0 | \n", "0.650485 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "618 | \n", "1 | \n", "0.480949 | \n", "0.495839 | \n", "0.064536 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.825243 | \n", "
1002 | \n", "chr11 | \n", "1004 | \n", "6.0 | \n", "0.793478 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "552 | \n", "3 | \n", "0.684659 | \n", "0.632675 | \n", "0.075314 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.987319 | \n", "
1003 | \n", "chr11 | \n", "1004 | \n", "6.0 | \n", "0.855932 | \n", "{0.0: 1.0, 0.01: 1.0, 0.02: 1.0, 0.03: 1.0, 0.... | \n", "472 | \n", "1 | \n", "0.745523 | \n", "0.660855 | \n", "0.078882 | \n", "... | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "NaN | \n", "0.927966 | \n", "
1004 rows × 66 columns
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