### STAR-2.7.3a/bin/Linux_x86_64/STAR --runMode genomeGenerate --runThreadN 16 --genomeDir /data/bharris/reference_genomes/10x/maize/new_index_5_18_20/ --genomeFastaFiles /data/bharris/reference_genomes/10x/maize/genome.fa --sjdbGTFfile /data/bharris/reference_genomes/10x/maize/genes_apr9.gtf ### GstrandBit 32 versionGenome 2.7.1a genomeFastaFiles /data/bharris/reference_genomes/10x/maize/genome.fa genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 1 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile /data/bharris/reference_genomes/10x/maize/genes_apr9.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic genomeFileSizes 2234324813 17223587365