[bwa_index] Pack FASTA... 12.22 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=4270166122, availableWord=312464692
[BWTIncConstructFromPacked] 10 iterations done. 99999994 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 199999994 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 299999994 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 399999994 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 499999994 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 599999994 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 699999994 characters processed.
[BWTIncConstructFromPacked] 80 iterations done. 799999994 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 899999994 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 999999994 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 1099999994 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 1199999994 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 1299999994 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 1399999994 characters processed.
[BWTIncConstructFromPacked] 150 iterations done. 1499999994 characters processed.
[BWTIncConstructFromPacked] 160 iterations done. 1599999994 characters processed.
[BWTIncConstructFromPacked] 170 iterations done. 1699999994 characters processed.
[BWTIncConstructFromPacked] 180 iterations done. 1799999994 characters processed.
[BWTIncConstructFromPacked] 190 iterations done. 1899999994 characters processed.
[BWTIncConstructFromPacked] 200 iterations done. 1999999994 characters processed.
[BWTIncConstructFromPacked] 210 iterations done. 2099999994 characters processed.
[BWTIncConstructFromPacked] 220 iterations done. 2199999994 characters processed.
[BWTIncConstructFromPacked] 230 iterations done. 2299999994 characters processed.
[BWTIncConstructFromPacked] 240 iterations done. 2399999994 characters processed.
[BWTIncConstructFromPacked] 250 iterations done. 2499999994 characters processed.
[BWTIncConstructFromPacked] 260 iterations done. 2599999994 characters processed.
[BWTIncConstructFromPacked] 270 iterations done. 2699999994 characters processed.
[BWTIncConstructFromPacked] 280 iterations done. 2799999994 characters processed.
[BWTIncConstructFromPacked] 290 iterations done. 2899999994 characters processed.
[BWTIncConstructFromPacked] 300 iterations done. 2999999994 characters processed.
[BWTIncConstructFromPacked] 310 iterations done. 3099999994 characters processed.
[BWTIncConstructFromPacked] 320 iterations done. 3199999994 characters processed.
[BWTIncConstructFromPacked] 330 iterations done. 3299999994 characters processed.
[BWTIncConstructFromPacked] 340 iterations done. 3399999994 characters processed.
[BWTIncConstructFromPacked] 350 iterations done. 3499999994 characters processed.
[BWTIncConstructFromPacked] 360 iterations done. 3599991850 characters processed.
[BWTIncConstructFromPacked] 370 iterations done. 3693689226 characters processed.
[BWTIncConstructFromPacked] 380 iterations done. 3776963690 characters processed.
[BWTIncConstructFromPacked] 390 iterations done. 3850974234 characters processed.
[BWTIncConstructFromPacked] 400 iterations done. 3916750986 characters processed.
[BWTIncConstructFromPacked] 410 iterations done. 3975209514 characters processed.
[BWTIncConstructFromPacked] 420 iterations done. 4027163610 characters processed.
[BWTIncConstructFromPacked] 430 iterations done. 4073336506 characters processed.
[BWTIncConstructFromPacked] 440 iterations done. 4114371098 characters processed.
[BWTIncConstructFromPacked] 450 iterations done. 4150838714 characters processed.
[BWTIncConstructFromPacked] 460 iterations done. 4183247162 characters processed.
[BWTIncConstructFromPacked] 470 iterations done. 4212047866 characters processed.
[BWTIncConstructFromPacked] 480 iterations done. 4237641946 characters processed.
[BWTIncConstructFromPacked] 490 iterations done. 4260386026 characters processed.
[bwt_gen] Finished constructing BWT in 495 iterations.
[bwa_index] 1418.71 seconds elapse.
[bwa_index] Update BWT... 9.03 sec
[bwa_index] Pack forward-only FASTA... 6.84 sec
[bwa_index] Construct SA from BWT and Occ... 606.04 sec
[main] Version: 0.7.17-r1198-dirty
[main] CMD: bwa index ../GCF_000005005.2_B73_RefGen_v4_genomic.fna
[main] Real time: 2066.784 sec; CPU: 2052.849 sec