2021-08-02 14:38:41 [INFO] Starting.
2021-08-02 14:38:41 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-02 14:38:41 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-02 14:38:41 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes
2021-08-02 14:38:41 [INFO] Using only main chromosomes: chr3R, chr3L, chr2R, chrX, chr2L, chrY, chr4, chrM
2021-08-02 14:38:41 [INFO] Building aggregate.
2021-08-02 14:38:41 [INFO] Writing every 10 Runs.
2021-08-02 14:38:41 [INFO] Processing SRX2837377. (1/2)
2021-08-02 14:38:41 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-02 14:38:45 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-02 14:38:49 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-02 14:38:52 [INFO] Processing SRX2837376. (2/2)
2021-08-02 14:38:52 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-02 14:38:55 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-02 14:38:58 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-02 14:39:01 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-02 14:39:03 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-02 14:39:05 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-02 14:39:08 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-02 14:39:11 [INFO] Writing to disk...
2021-08-02 14:39:12 [INFO] Finished.
2021-08-02 16:00:58 [INFO] Starting.
2021-08-02 16:00:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-02 16:00:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-02 16:00:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:00:58 [INFO] Building aggregate.
2021-08-02 16:00:58 [INFO] Writing every 10 Runs.
2021-08-02 16:00:58 [INFO] Processing SRX2837377. (1/2)
2021-08-02 16:44:31 [INFO] Starting.
2021-08-02 16:44:31 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-02 16:44:31 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-02 16:44:31 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5.
2021-08-02 16:44:31 [INFO] Building aggregate.
2021-08-02 16:44:31 [INFO] Writing every 10 Runs.
2021-08-02 16:44:31 [INFO] Processing SRX2837377. (1/2)
2021-08-02 16:56:36 [INFO] Starting.
2021-08-02 16:56:36 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-02 16:56:36 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-02 16:56:36 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:56:36 [INFO] Building aggregate.
2021-08-02 16:56:36 [INFO] Writing every 10 Runs.
2021-08-02 16:56:36 [INFO] Processing SRX2837377. (1/2)
2021-08-02 16:56:36 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-02 16:56:43 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-02 16:56:55 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-02 16:57:07 [INFO] Processing SRX2837376. (2/2)
2021-08-02 16:57:07 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-02 16:57:19 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-02 16:57:32 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-02 16:57:44 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-02 16:57:57 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-02 16:58:09 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-02 16:58:22 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-02 16:58:35 [INFO] Writing to disk...
2021-08-02 16:58:38 [INFO] Finished.
2021-08-03 14:01:06 [INFO] Starting.
2021-08-03 14:01:06 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-03 14:01:06 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-03 14:01:06 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:01:07 [INFO] Building aggregate for 40kbp_raw network.
2021-08-03 14:01:07 [INFO] Writing every 10 Runs.
2021-08-03 14:01:07 [INFO] Processing SRX2837377. (1/2)
2021-08-03 14:01:07 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-03 14:01:09 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-03 14:01:11 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-03 14:01:12 [INFO] Processing SRX2837376. (2/2)
2021-08-03 14:01:12 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-03 14:01:14 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-03 14:01:15 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-03 14:01:17 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-03 14:01:18 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-03 14:01:20 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-03 14:01:21 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-03 14:01:23 [INFO] Writing to disk...
2021-08-03 14:01:23 [INFO] Finished.
2021-08-03 14:03:17 [INFO] Starting.
2021-08-03 14:03:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-03 14:03:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-03 14:03:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:03:17 [INFO] Building aggregate for 25kbp_raw network.
2021-08-03 14:03:17 [INFO] Writing every 10 Runs.
2021-08-03 14:03:17 [INFO] Processing SRX2837377. (1/2)
2021-08-03 14:03:17 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-03 14:03:20 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-03 14:03:23 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-03 14:03:25 [INFO] Processing SRX2837376. (2/2)
2021-08-03 14:03:25 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-03 14:03:27 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-03 14:03:29 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-03 14:03:31 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-03 14:03:33 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-03 14:03:35 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-03 14:03:36 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-03 14:03:38 [INFO] Writing to disk...
2021-08-03 14:03:39 [INFO] Finished.
2021-08-03 14:05:46 [INFO] Starting.
2021-08-03 14:05:46 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-03 14:05:46 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-03 14:05:46 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:05:47 [INFO] Building aggregate for 5kbp_raw network.
2021-08-03 14:05:47 [INFO] Writing every 10 Runs.
2021-08-03 14:05:47 [INFO] Processing SRX2837377. (1/2)
2021-08-03 14:05:47 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-03 14:05:50 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-03 14:05:52 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-03 14:05:56 [INFO] Processing SRX2837376. (2/2)
2021-08-03 14:05:56 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-03 14:05:58 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-03 14:06:01 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-03 14:06:03 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-03 14:06:05 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-03 14:06:08 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-03 14:06:10 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-03 14:06:12 [INFO] Writing to disk...
2021-08-03 14:06:13 [INFO] Finished.
2021-08-03 14:10:56 [INFO] Starting.
2021-08-03 14:10:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-03 14:10:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-03 14:10:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:10:56 [INFO] Building aggregate for 1kbp_raw network.
2021-08-03 14:10:56 [INFO] Writing every 10 Runs.
2021-08-03 14:10:56 [INFO] Processing SRX2837377. (1/2)
2021-08-03 14:10:56 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-03 14:10:59 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-03 14:11:03 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-03 14:11:07 [INFO] Processing SRX2837376. (2/2)
2021-08-03 14:11:07 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-03 14:11:10 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-03 14:11:13 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-03 14:11:16 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-03 14:11:19 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-03 14:11:22 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-03 14:11:25 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-03 14:11:29 [INFO] Writing to disk...
2021-08-03 14:11:31 [INFO] Finished.
2021-08-17 10:17:26 [INFO] Starting.
2021-08-17 10:17:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-17 10:17:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-17 10:17:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:17:26 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:17:26 [INFO] Writing every 10 Runs.
2021-08-17 10:17:26 [INFO] Processing SRX2837377. (1/2)
2021-08-17 10:17:26 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-17 10:32:26 [INFO] Starting.
2021-08-17 10:32:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-17 10:32:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-17 10:32:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:32:26 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:32:26 [INFO] Writing every 10 Runs.
2021-08-17 10:32:26 [INFO] Processing SRX2837377. (1/2)
2021-08-17 10:32:26 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-17 10:32:27 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-17 10:32:28 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-17 10:32:29 [INFO] Processing SRX2837376. (2/2)
2021-08-17 10:32:29 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-17 10:32:29 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-17 10:32:30 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-17 10:32:30 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-17 10:32:31 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-17 10:32:32 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-17 10:32:32 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-17 10:32:33 [INFO] Writing to disk...
2021-08-17 10:32:33 [INFO] Finished.
2021-08-17 10:38:54 [INFO] Starting.
2021-08-17 10:38:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-17 10:38:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-17 10:38:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:38:54 [INFO] Building aggregate for 250kbp_raw network.
2021-08-17 10:38:54 [INFO] Writing every 10 Runs.
2021-08-17 10:38:54 [INFO] Processing SRX2837377. (1/2)
2021-08-17 10:38:54 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-17 10:38:54 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-17 10:38:54 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-17 10:38:55 [INFO] Processing SRX2837376. (2/2)
2021-08-17 10:38:55 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-17 10:38:55 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-17 10:38:55 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-17 10:38:56 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-17 10:38:56 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-17 10:38:56 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-17 10:38:57 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-17 10:38:57 [INFO] Writing to disk...
2021-08-17 10:38:57 [INFO] Finished.
2021-08-17 10:40:20 [INFO] Starting.
2021-08-17 10:40:20 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/
2021-08-17 10:40:20 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107636/aggregate.hdf5
2021-08-17 10:40:20 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:40:20 [INFO] Building aggregate for 500kbp_raw network.
2021-08-17 10:40:20 [INFO] Writing every 10 Runs.
2021-08-17 10:40:20 [INFO] Processing SRX2837377. (1/2)
2021-08-17 10:40:20 [INFO] Processing SRX2837377-SRR5579169. (1/10)
2021-08-17 10:40:20 [INFO] Processing SRX2837377-SRR5579168. (2/10)
2021-08-17 10:40:20 [INFO] Processing SRX2837377-SRR5579167. (3/10)
2021-08-17 10:40:20 [INFO] Processing SRX2837376. (2/2)
2021-08-17 10:40:20 [INFO] Processing SRX2837376-SRR5579166. (4/10)
2021-08-17 10:40:20 [INFO] Processing SRX2837376-SRR5579165. (5/10)
2021-08-17 10:40:21 [INFO] Processing SRX2837376-SRR5579161. (6/10)
2021-08-17 10:40:21 [INFO] Processing SRX2837376-SRR5579164. (7/10)
2021-08-17 10:40:21 [INFO] Processing SRX2837376-SRR5579162. (8/10)
2021-08-17 10:40:21 [INFO] Processing SRX2837376-SRR5579163. (9/10)
2021-08-17 10:40:21 [INFO] Processing SRX2837376-SRR5579160. (10/10)
2021-08-17 10:40:21 [INFO] Writing to disk...
2021-08-17 10:40:21 [INFO] Finished.