2021-08-02 14:38:41 [INFO] Starting.
2021-08-02 14:38:41 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-02 14:38:41 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-02 14:38:41 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes
2021-08-02 14:38:41 [INFO] Using only main chromosomes: chr3R, chr3L, chr2R, chrX, chr2L, chrY, chr4, chrM
2021-08-02 14:38:41 [INFO] Building aggregate.
2021-08-02 14:38:41 [INFO] Writing every 10 Runs.
2021-08-02 14:38:41 [INFO] Processing SRX2837379. (1/2)
2021-08-02 14:38:41 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-02 14:38:45 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-02 14:38:48 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-02 14:38:52 [INFO] Processing SRX2837378. (2/2)
2021-08-02 14:38:52 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-02 14:38:55 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-02 14:38:58 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-02 14:39:01 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-02 14:39:04 [INFO] Writing to disk...
2021-08-02 14:39:05 [INFO] Finished.
2021-08-02 16:00:58 [INFO] Starting.
2021-08-02 16:00:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-02 16:00:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-02 16:00:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:00:58 [INFO] Building aggregate.
2021-08-02 16:00:58 [INFO] Writing every 10 Runs.
2021-08-02 16:00:58 [INFO] Processing SRX2837379. (1/2)
2021-08-02 16:44:32 [INFO] Starting.
2021-08-02 16:44:32 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-02 16:44:32 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-02 16:44:32 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:44:32 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:44:32 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:44:32 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:44:32 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5.
2021-08-02 16:44:32 [INFO] Building aggregate.
2021-08-02 16:44:32 [INFO] Writing every 10 Runs.
2021-08-02 16:44:32 [INFO] Processing SRX2837379. (1/2)
2021-08-02 16:56:37 [INFO] Starting.
2021-08-02 16:56:37 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-02 16:56:37 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-02 16:56:37 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:56:37 [INFO] Building aggregate.
2021-08-02 16:56:37 [INFO] Writing every 10 Runs.
2021-08-02 16:56:37 [INFO] Processing SRX2837379. (1/2)
2021-08-02 16:56:37 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-02 16:56:45 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-02 16:56:57 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-02 16:57:10 [INFO] Processing SRX2837378. (2/2)
2021-08-02 16:57:10 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-02 16:57:22 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-02 16:57:35 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-02 16:57:48 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-02 16:58:02 [INFO] Writing to disk...
2021-08-02 16:58:06 [INFO] Finished.
2021-08-03 14:01:06 [INFO] Starting.
2021-08-03 14:01:06 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-03 14:01:06 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-03 14:01:06 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:01:07 [INFO] Building aggregate for 40kbp_raw network.
2021-08-03 14:01:07 [INFO] Writing every 10 Runs.
2021-08-03 14:01:07 [INFO] Processing SRX2837379. (1/2)
2021-08-03 14:01:07 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-03 14:01:09 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-03 14:01:11 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-03 14:01:13 [INFO] Processing SRX2837378. (2/2)
2021-08-03 14:01:13 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-03 14:01:14 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-03 14:01:16 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-03 14:01:18 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-03 14:01:19 [INFO] Writing to disk...
2021-08-03 14:01:20 [INFO] Finished.
2021-08-03 14:03:17 [INFO] Starting.
2021-08-03 14:03:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-03 14:03:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-03 14:03:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:03:17 [INFO] Building aggregate for 25kbp_raw network.
2021-08-03 14:03:17 [INFO] Writing every 10 Runs.
2021-08-03 14:03:17 [INFO] Processing SRX2837379. (1/2)
2021-08-03 14:03:17 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-03 14:03:19 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-03 14:03:21 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-03 14:03:24 [INFO] Processing SRX2837378. (2/2)
2021-08-03 14:03:24 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-03 14:03:26 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-03 14:03:29 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-03 14:03:31 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-03 14:03:33 [INFO] Writing to disk...
2021-08-03 14:03:33 [INFO] Finished.
2021-08-03 14:05:45 [INFO] Starting.
2021-08-03 14:05:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-03 14:05:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-03 14:05:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:05:45 [INFO] Building aggregate for 5kbp_raw network.
2021-08-03 14:05:45 [INFO] Writing every 10 Runs.
2021-08-03 14:05:45 [INFO] Processing SRX2837379. (1/2)
2021-08-03 14:05:45 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-03 14:05:48 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-03 14:05:51 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-03 14:05:55 [INFO] Processing SRX2837378. (2/2)
2021-08-03 14:05:55 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-03 14:05:57 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-03 14:06:00 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-03 14:06:02 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-03 14:06:05 [INFO] Writing to disk...
2021-08-03 14:06:07 [INFO] Finished.
2021-08-03 14:10:56 [INFO] Starting.
2021-08-03 14:10:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-03 14:10:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-03 14:10:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:10:56 [INFO] Building aggregate for 1kbp_raw network.
2021-08-03 14:10:56 [INFO] Writing every 10 Runs.
2021-08-03 14:10:56 [INFO] Processing SRX2837379. (1/2)
2021-08-03 14:10:56 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-03 14:10:59 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-03 14:11:03 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-03 14:11:06 [INFO] Processing SRX2837378. (2/2)
2021-08-03 14:11:06 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-03 14:11:09 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-03 14:11:12 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-03 14:11:15 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-03 14:11:18 [INFO] Writing to disk...
2021-08-03 14:11:20 [INFO] Finished.
2021-08-17 10:17:26 [INFO] Starting.
2021-08-17 10:17:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-17 10:17:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-17 10:17:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:17:26 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:17:26 [INFO] Writing every 10 Runs.
2021-08-17 10:17:26 [INFO] Processing SRX2837379. (1/2)
2021-08-17 10:17:26 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-17 10:32:25 [INFO] Starting.
2021-08-17 10:32:25 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-17 10:32:25 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-17 10:32:25 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:32:25 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:32:25 [INFO] Writing every 10 Runs.
2021-08-17 10:32:25 [INFO] Processing SRX2837379. (1/2)
2021-08-17 10:32:25 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-17 10:32:26 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-17 10:32:26 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-17 10:32:27 [INFO] Processing SRX2837378. (2/2)
2021-08-17 10:32:27 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-17 10:32:28 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-17 10:32:28 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-17 10:32:29 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-17 10:32:30 [INFO] Writing to disk...
2021-08-17 10:32:30 [INFO] Finished.
2021-08-17 10:38:54 [INFO] Starting.
2021-08-17 10:38:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-17 10:38:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-17 10:38:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:38:54 [INFO] Building aggregate for 250kbp_raw network.
2021-08-17 10:38:54 [INFO] Writing every 10 Runs.
2021-08-17 10:38:54 [INFO] Processing SRX2837379. (1/2)
2021-08-17 10:38:54 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-17 10:38:54 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-17 10:38:54 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-17 10:38:55 [INFO] Processing SRX2837378. (2/2)
2021-08-17 10:38:55 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-17 10:38:55 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-17 10:38:55 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-17 10:38:56 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-17 10:38:56 [INFO] Writing to disk...
2021-08-17 10:38:56 [INFO] Finished.
2021-08-17 10:40:20 [INFO] Starting.
2021-08-17 10:40:20 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/
2021-08-17 10:40:20 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP107637/aggregate.hdf5
2021-08-17 10:40:20 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:40:20 [INFO] Building aggregate for 500kbp_raw network.
2021-08-17 10:40:20 [INFO] Writing every 10 Runs.
2021-08-17 10:40:20 [INFO] Processing SRX2837379. (1/2)
2021-08-17 10:40:20 [INFO] Processing SRX2837379-SRR5579176. (1/7)
2021-08-17 10:40:20 [INFO] Processing SRX2837379-SRR5579174. (2/7)
2021-08-17 10:40:20 [INFO] Processing SRX2837379-SRR5579175. (3/7)
2021-08-17 10:40:20 [INFO] Processing SRX2837378. (2/2)
2021-08-17 10:40:20 [INFO] Processing SRX2837378-SRR5579171. (4/7)
2021-08-17 10:40:21 [INFO] Processing SRX2837378-SRR5579172. (5/7)
2021-08-17 10:40:21 [INFO] Processing SRX2837378-SRR5579170. (6/7)
2021-08-17 10:40:21 [INFO] Processing SRX2837378-SRR5579173. (7/7)
2021-08-17 10:40:21 [INFO] Writing to disk...
2021-08-17 10:40:21 [INFO] Finished.