2021-08-02 14:38:41 [INFO] Starting.
2021-08-02 14:38:41 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-02 14:38:41 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-02 14:38:41 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes
2021-08-02 14:38:41 [INFO] Using only main chromosomes: chr3R, chr3L, chr2R, chrX, chr2L, chrY, chr4, chrM
2021-08-02 14:38:41 [INFO] Building aggregate.
2021-08-02 14:38:41 [INFO] Writing every 10 Runs.
2021-08-02 14:38:41 [INFO] Processing SRX2997986. (1/4)
2021-08-02 14:38:41 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-02 14:38:44 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-02 14:38:46 [INFO] Processing SRX2997987. (2/4)
2021-08-02 14:38:46 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-02 14:38:48 [INFO] Processing SRX2997988. (3/4)
2021-08-02 14:38:48 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-02 14:38:50 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-02 14:38:52 [INFO] Processing SRX2997989. (4/4)
2021-08-02 14:38:52 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-02 14:38:53 [INFO] Writing to disk...
2021-08-02 14:38:55 [INFO] Finished.
2021-08-02 16:00:58 [INFO] Starting.
2021-08-02 16:00:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-02 16:00:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-02 16:00:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:00:58 [INFO] Building aggregate.
2021-08-02 16:00:58 [INFO] Writing every 10 Runs.
2021-08-02 16:00:58 [INFO] Processing SRX2997986. (1/4)
2021-08-02 16:44:31 [INFO] Starting.
2021-08-02 16:44:31 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-02 16:44:31 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-02 16:44:31 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5.
2021-08-02 16:44:31 [INFO] Building aggregate.
2021-08-02 16:44:31 [INFO] Writing every 10 Runs.
2021-08-02 16:44:31 [INFO] Processing SRX2997986. (1/4)
2021-08-02 16:56:36 [INFO] Starting.
2021-08-02 16:56:36 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-02 16:56:36 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-02 16:56:36 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:56:36 [INFO] Building aggregate.
2021-08-02 16:56:36 [INFO] Writing every 10 Runs.
2021-08-02 16:56:36 [INFO] Processing SRX2997986. (1/4)
2021-08-02 16:56:36 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-02 16:57:02 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-02 16:57:25 [INFO] Processing SRX2997987. (2/4)
2021-08-02 16:57:25 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-02 16:57:49 [INFO] Processing SRX2997988. (3/4)
2021-08-02 16:57:49 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-02 16:58:13 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-02 16:58:38 [INFO] Processing SRX2997989. (4/4)
2021-08-02 16:58:38 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-02 16:59:00 [INFO] Writing to disk...
2021-08-02 16:59:15 [INFO] Finished.
2021-08-03 14:01:07 [INFO] Starting.
2021-08-03 14:01:07 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-03 14:01:07 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-03 14:01:07 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:01:08 [INFO] Building aggregate for 40kbp_raw network.
2021-08-03 14:01:08 [INFO] Writing every 10 Runs.
2021-08-03 14:01:08 [INFO] Processing SRX2997986. (1/4)
2021-08-03 14:01:08 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-03 14:01:10 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-03 14:01:12 [INFO] Processing SRX2997987. (2/4)
2021-08-03 14:01:12 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-03 14:01:13 [INFO] Processing SRX2997988. (3/4)
2021-08-03 14:01:13 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-03 14:01:15 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-03 14:01:16 [INFO] Processing SRX2997989. (4/4)
2021-08-03 14:01:16 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-03 14:01:18 [INFO] Writing to disk...
2021-08-03 14:01:18 [INFO] Finished.
2021-08-03 14:03:17 [INFO] Starting.
2021-08-03 14:03:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-03 14:03:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-03 14:03:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:03:18 [INFO] Building aggregate for 25kbp_raw network.
2021-08-03 14:03:18 [INFO] Writing every 10 Runs.
2021-08-03 14:03:18 [INFO] Processing SRX2997986. (1/4)
2021-08-03 14:03:18 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-03 14:03:20 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-03 14:03:22 [INFO] Processing SRX2997987. (2/4)
2021-08-03 14:03:22 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-03 14:03:23 [INFO] Processing SRX2997988. (3/4)
2021-08-03 14:03:23 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-03 14:03:25 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-03 14:03:27 [INFO] Processing SRX2997989. (4/4)
2021-08-03 14:03:27 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-03 14:03:28 [INFO] Writing to disk...
2021-08-03 14:03:29 [INFO] Finished.
2021-08-03 14:05:45 [INFO] Starting.
2021-08-03 14:05:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-03 14:05:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-03 14:05:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:05:45 [INFO] Building aggregate for 5kbp_raw network.
2021-08-03 14:05:45 [INFO] Writing every 10 Runs.
2021-08-03 14:05:45 [INFO] Processing SRX2997986. (1/4)
2021-08-03 14:05:45 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-03 14:05:50 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-03 14:05:55 [INFO] Processing SRX2997987. (2/4)
2021-08-03 14:05:55 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-03 14:05:59 [INFO] Processing SRX2997988. (3/4)
2021-08-03 14:05:59 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-03 14:06:02 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-03 14:06:05 [INFO] Processing SRX2997989. (4/4)
2021-08-03 14:06:05 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-03 14:06:07 [INFO] Writing to disk...
2021-08-03 14:06:08 [INFO] Finished.
2021-08-03 14:10:56 [INFO] Starting.
2021-08-03 14:10:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-03 14:10:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-03 14:10:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:10:56 [INFO] Building aggregate for 1kbp_raw network.
2021-08-03 14:10:56 [INFO] Writing every 10 Runs.
2021-08-03 14:10:56 [INFO] Processing SRX2997986. (1/4)
2021-08-03 14:10:56 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-03 14:11:02 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-03 14:11:05 [INFO] Processing SRX2997987. (2/4)
2021-08-03 14:11:05 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-03 14:11:11 [INFO] Processing SRX2997988. (3/4)
2021-08-03 14:11:11 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-03 14:11:15 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-03 14:11:19 [INFO] Processing SRX2997989. (4/4)
2021-08-03 14:11:19 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-03 14:11:24 [INFO] Writing to disk...
2021-08-03 14:11:26 [INFO] Finished.
2021-08-17 10:17:26 [INFO] Starting.
2021-08-17 10:17:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-17 10:17:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-17 10:17:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:17:26 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:17:26 [INFO] Writing every 10 Runs.
2021-08-17 10:17:26 [INFO] Processing SRX2997986. (1/4)
2021-08-17 10:17:26 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-17 10:32:24 [INFO] Starting.
2021-08-17 10:32:24 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-17 10:32:24 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-17 10:32:24 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:32:24 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:32:24 [INFO] Writing every 10 Runs.
2021-08-17 10:32:24 [INFO] Processing SRX2997986. (1/4)
2021-08-17 10:32:24 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-17 10:32:25 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-17 10:32:26 [INFO] Processing SRX2997987. (2/4)
2021-08-17 10:32:26 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-17 10:32:27 [INFO] Processing SRX2997988. (3/4)
2021-08-17 10:32:27 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-17 10:32:27 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-17 10:32:28 [INFO] Processing SRX2997989. (4/4)
2021-08-17 10:32:28 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-17 10:32:28 [INFO] Writing to disk...
2021-08-17 10:32:29 [INFO] Finished.
2021-08-17 10:38:52 [INFO] Starting.
2021-08-17 10:38:52 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-17 10:38:52 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-17 10:38:52 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:38:52 [INFO] Building aggregate for 250kbp_raw network.
2021-08-17 10:38:52 [INFO] Writing every 10 Runs.
2021-08-17 10:38:52 [INFO] Processing SRX2997986. (1/4)
2021-08-17 10:38:52 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-17 10:38:53 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-17 10:38:53 [INFO] Processing SRX2997987. (2/4)
2021-08-17 10:38:53 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-17 10:38:53 [INFO] Processing SRX2997988. (3/4)
2021-08-17 10:38:53 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-17 10:38:53 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-17 10:38:53 [INFO] Processing SRX2997989. (4/4)
2021-08-17 10:38:53 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-17 10:38:54 [INFO] Writing to disk...
2021-08-17 10:38:54 [INFO] Finished.
2021-08-17 10:40:20 [INFO] Starting.
2021-08-17 10:40:20 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/
2021-08-17 10:40:20 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP111713/aggregate.hdf5
2021-08-17 10:40:20 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:40:21 [INFO] Building aggregate for 500kbp_raw network.
2021-08-17 10:40:21 [INFO] Writing every 10 Runs.
2021-08-17 10:40:21 [INFO] Processing SRX2997986. (1/4)
2021-08-17 10:40:21 [INFO] Processing SRX2997986-SRR5820089. (1/6)
2021-08-17 10:40:21 [INFO] Processing SRX2997986-SRR5820090. (2/6)
2021-08-17 10:40:21 [INFO] Processing SRX2997987. (2/4)
2021-08-17 10:40:21 [INFO] Processing SRX2997987-SRR5820091. (3/6)
2021-08-17 10:40:21 [INFO] Processing SRX2997988. (3/4)
2021-08-17 10:40:21 [INFO] Processing SRX2997988-SRR5820093. (4/6)
2021-08-17 10:40:21 [INFO] Processing SRX2997988-SRR5820092. (5/6)
2021-08-17 10:40:22 [INFO] Processing SRX2997989. (4/4)
2021-08-17 10:40:22 [INFO] Processing SRX2997989-SRR5820094. (6/6)
2021-08-17 10:40:22 [INFO] Writing to disk...
2021-08-17 10:40:22 [INFO] Finished.