2021-08-02 14:38:41 [INFO] Starting.
2021-08-02 14:38:41 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-02 14:38:41 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-02 14:38:41 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes
2021-08-02 14:38:41 [INFO] Using only main chromosomes: chr3R, chr3L, chr2R, chrX, chr2L, chrY, chr4, chrM
2021-08-02 14:38:41 [INFO] Building aggregate.
2021-08-02 14:38:41 [INFO] Writing every 10 Runs.
2021-08-02 14:38:41 [INFO] Processing SRX6763731. (1/6)
2021-08-02 14:38:41 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-02 14:38:42 [INFO] Processing SRX6763733. (2/6)
2021-08-02 14:38:42 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-02 14:38:43 [INFO] Processing SRX6763729. (3/6)
2021-08-02 14:38:43 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-02 14:38:46 [INFO] Processing SRX6763728. (4/6)
2021-08-02 14:38:46 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-02 14:38:47 [INFO] Processing SRX6763730. (5/6)
2021-08-02 14:38:47 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-02 14:38:50 [INFO] Processing SRX6763732. (6/6)
2021-08-02 14:38:50 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-02 14:38:52 [INFO] Writing to disk...
2021-08-02 14:38:52 [INFO] Finished.
2021-08-02 16:00:58 [INFO] Starting.
2021-08-02 16:00:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-02 16:00:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-02 16:00:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:00:58 [ERROR] /aggregates/1kbp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:00:58 [INFO] Building aggregate.
2021-08-02 16:00:58 [INFO] Writing every 10 Runs.
2021-08-02 16:00:58 [INFO] Processing SRX6763731. (1/6)
2021-08-02 16:44:31 [INFO] Starting.
2021-08-02 16:44:31 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-02 16:44:31 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-02 16:44:31 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:44:31 [ERROR] /aggregates/1bp_raw does not exist in /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5.
2021-08-02 16:44:31 [INFO] Building aggregate.
2021-08-02 16:44:31 [INFO] Writing every 10 Runs.
2021-08-02 16:44:31 [INFO] Processing SRX6763731. (1/6)
2021-08-02 16:56:36 [INFO] Starting.
2021-08-02 16:56:36 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-02 16:56:36 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-02 16:56:36 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-02 16:56:36 [INFO] Building aggregate.
2021-08-02 16:56:36 [INFO] Writing every 10 Runs.
2021-08-02 16:56:36 [INFO] Processing SRX6763731. (1/6)
2021-08-02 16:56:36 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-02 16:56:39 [INFO] Processing SRX6763733. (2/6)
2021-08-02 16:56:39 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-02 16:56:49 [INFO] Processing SRX6763729. (3/6)
2021-08-02 16:56:49 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-02 16:57:00 [INFO] Processing SRX6763728. (4/6)
2021-08-02 16:57:00 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-02 16:57:09 [INFO] Processing SRX6763730. (5/6)
2021-08-02 16:57:09 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-02 16:57:20 [INFO] Processing SRX6763732. (6/6)
2021-08-02 16:57:20 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-02 16:57:30 [INFO] Writing to disk...
2021-08-02 16:57:33 [INFO] Finished.
2021-08-03 14:01:07 [INFO] Starting.
2021-08-03 14:01:07 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-03 14:01:07 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-03 14:01:07 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:01:08 [INFO] Building aggregate for 40kbp_raw network.
2021-08-03 14:01:08 [INFO] Writing every 10 Runs.
2021-08-03 14:01:08 [INFO] Processing SRX6763731. (1/6)
2021-08-03 14:01:08 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-03 14:01:08 [INFO] Processing SRX6763733. (2/6)
2021-08-03 14:01:08 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-03 14:01:09 [INFO] Processing SRX6763729. (3/6)
2021-08-03 14:01:09 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-03 14:01:10 [INFO] Processing SRX6763728. (4/6)
2021-08-03 14:01:10 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-03 14:01:11 [INFO] Processing SRX6763730. (5/6)
2021-08-03 14:01:11 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-03 14:01:12 [INFO] Processing SRX6763732. (6/6)
2021-08-03 14:01:12 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-03 14:01:13 [INFO] Writing to disk...
2021-08-03 14:01:13 [INFO] Finished.
2021-08-03 14:03:17 [INFO] Starting.
2021-08-03 14:03:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-03 14:03:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-03 14:03:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:03:18 [INFO] Building aggregate for 25kbp_raw network.
2021-08-03 14:03:18 [INFO] Writing every 10 Runs.
2021-08-03 14:03:18 [INFO] Processing SRX6763731. (1/6)
2021-08-03 14:03:18 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-03 14:03:18 [INFO] Processing SRX6763733. (2/6)
2021-08-03 14:03:18 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-03 14:03:19 [INFO] Processing SRX6763729. (3/6)
2021-08-03 14:03:19 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-03 14:03:21 [INFO] Processing SRX6763728. (4/6)
2021-08-03 14:03:21 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-03 14:03:22 [INFO] Processing SRX6763730. (5/6)
2021-08-03 14:03:22 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-03 14:03:24 [INFO] Processing SRX6763732. (6/6)
2021-08-03 14:03:24 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-03 14:03:25 [INFO] Writing to disk...
2021-08-03 14:03:25 [INFO] Finished.
2021-08-03 14:05:45 [INFO] Starting.
2021-08-03 14:05:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-03 14:05:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-03 14:05:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:05:45 [INFO] Building aggregate for 5kbp_raw network.
2021-08-03 14:05:45 [INFO] Writing every 10 Runs.
2021-08-03 14:05:45 [INFO] Processing SRX6763731. (1/6)
2021-08-03 14:05:45 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-03 14:05:46 [INFO] Processing SRX6763733. (2/6)
2021-08-03 14:05:46 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-03 14:05:47 [INFO] Processing SRX6763729. (3/6)
2021-08-03 14:05:47 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-03 14:05:49 [INFO] Processing SRX6763728. (4/6)
2021-08-03 14:05:49 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-03 14:05:51 [INFO] Processing SRX6763730. (5/6)
2021-08-03 14:05:51 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-03 14:05:54 [INFO] Processing SRX6763732. (6/6)
2021-08-03 14:05:54 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-03 14:05:56 [INFO] Writing to disk...
2021-08-03 14:05:57 [INFO] Finished.
2021-08-03 14:10:56 [INFO] Starting.
2021-08-03 14:10:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-03 14:10:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-03 14:10:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-03 14:10:56 [INFO] Building aggregate for 1kbp_raw network.
2021-08-03 14:10:56 [INFO] Writing every 10 Runs.
2021-08-03 14:10:56 [INFO] Processing SRX6763731. (1/6)
2021-08-03 14:10:56 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-03 14:10:57 [INFO] Processing SRX6763733. (2/6)
2021-08-03 14:10:57 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-03 14:10:58 [INFO] Processing SRX6763729. (3/6)
2021-08-03 14:10:58 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-03 14:11:01 [INFO] Processing SRX6763728. (4/6)
2021-08-03 14:11:01 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-03 14:11:02 [INFO] Processing SRX6763730. (5/6)
2021-08-03 14:11:02 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-03 14:11:05 [INFO] Processing SRX6763732. (6/6)
2021-08-03 14:11:05 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-03 14:11:07 [INFO] Writing to disk...
2021-08-03 14:11:09 [INFO] Finished.
2021-08-17 10:17:26 [INFO] Starting.
2021-08-17 10:17:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-17 10:17:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-17 10:17:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:17:26 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:17:26 [INFO] Writing every 10 Runs.
2021-08-17 10:17:26 [INFO] Processing SRX6763731. (1/6)
2021-08-17 10:17:26 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-17 10:32:24 [INFO] Starting.
2021-08-17 10:32:24 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-17 10:32:24 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-17 10:32:24 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:32:24 [INFO] Building aggregate for 100kbp_raw network.
2021-08-17 10:32:24 [INFO] Writing every 10 Runs.
2021-08-17 10:32:24 [INFO] Processing SRX6763731. (1/6)
2021-08-17 10:32:24 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-17 10:32:25 [INFO] Processing SRX6763733. (2/6)
2021-08-17 10:32:25 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-17 10:32:25 [INFO] Processing SRX6763729. (3/6)
2021-08-17 10:32:25 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-17 10:32:26 [INFO] Processing SRX6763728. (4/6)
2021-08-17 10:32:26 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-17 10:32:27 [INFO] Processing SRX6763730. (5/6)
2021-08-17 10:32:27 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-17 10:32:27 [INFO] Processing SRX6763732. (6/6)
2021-08-17 10:32:27 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-17 10:32:28 [INFO] Writing to disk...
2021-08-17 10:32:29 [INFO] Finished.
2021-08-17 10:38:53 [INFO] Starting.
2021-08-17 10:38:53 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-17 10:38:53 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-17 10:38:53 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:38:53 [INFO] Building aggregate for 250kbp_raw network.
2021-08-17 10:38:53 [INFO] Writing every 10 Runs.
2021-08-17 10:38:53 [INFO] Processing SRX6763731. (1/6)
2021-08-17 10:38:53 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-17 10:38:53 [INFO] Processing SRX6763733. (2/6)
2021-08-17 10:38:53 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-17 10:38:53 [INFO] Processing SRX6763729. (3/6)
2021-08-17 10:38:53 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-17 10:38:54 [INFO] Processing SRX6763728. (4/6)
2021-08-17 10:38:54 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-17 10:38:54 [INFO] Processing SRX6763730. (5/6)
2021-08-17 10:38:54 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-17 10:38:54 [INFO] Processing SRX6763732. (6/6)
2021-08-17 10:38:54 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-17 10:38:55 [INFO] Writing to disk...
2021-08-17 10:38:55 [INFO] Finished.
2021-08-17 10:40:20 [INFO] Starting.
2021-08-17 10:40:20 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/
2021-08-17 10:40:20 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_drosophila/SRP219433/aggregate.hdf5
2021-08-17 10:40:20 [WARNING] chroms=/grid/gillis/data/nfox/genomes/drosophila_melanogaster_6/dm6.chrom.sizes is ignored due to existing aggregate.
2021-08-17 10:40:20 [INFO] Building aggregate for 500kbp_raw network.
2021-08-17 10:40:20 [INFO] Writing every 10 Runs.
2021-08-17 10:40:20 [INFO] Processing SRX6763731. (1/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763731-SRR10027501. (1/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763733. (2/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763733-SRR10027503. (2/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763729. (3/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763729-SRR10027499. (3/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763728. (4/6)
2021-08-17 10:40:20 [INFO] Processing SRX6763728-SRR10027498. (4/6)
2021-08-17 10:40:21 [INFO] Processing SRX6763730. (5/6)
2021-08-17 10:40:21 [INFO] Processing SRX6763730-SRR10027500. (5/6)
2021-08-17 10:40:21 [INFO] Processing SRX6763732. (6/6)
2021-08-17 10:40:21 [INFO] Processing SRX6763732-SRR10027502. (6/6)
2021-08-17 10:40:21 [INFO] Writing to disk...
2021-08-17 10:40:21 [INFO] Finished.