Processing Report

/grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP050102/SRX765128/SRR1658825/hicup_output/SRR1658825.sra_1_2

OijGDKhjXI_13-24-02_24-06-2021

Truncating and Mapping

  Read 1 Read 2
Total Reads 1523760 1523760
Not Truncated 1264935 1294436
Truncated 258825 229324
Too short to map 19103 19029
Average length of truncated sequence 52.42 52.14
  Read 1 Read 2
Unique Alignments 1322020 1245411
Multiple Alignments 133637 136767
Failed To Align 49000 122553
Paired 1143200 1143200

Filtering

  Di-Tag Count
Valid Pairs 871514
Invalid Pairs 271686
Same Circularised 2634
Same Fragment Dangling Ends 31065
Same Fragment Internal 47484
Re-ligation 190503
Contiguous Sequence 0
Wrong Size 0
Total Pairs 1143200

Di-tag length Distribution

De-duplication

Percentage uniques: 99.93

  All Di-Tags Unique Di-Tags
Read Pairs 871514 870908
Cis-close (< 10Kbp) 410529 410225
Cis-far (> 10Kbp) 335052 334828
Trans 125933 125855