2021-06-10 04:29:14 [INFO] Starting.
2021-06-10 04:29:14 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-06-10 04:29:14 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-06-10 04:29:14 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 04:29:14 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 04:29:15 [INFO] Building aggregate.
2021-06-10 04:29:15 [INFO] Writing every 10 Runs.
2021-06-10 04:29:15 [INFO] Processing SRX3482876. (1/2)
2021-06-10 04:29:15 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-06-10 04:29:23 [INFO] Processing SRX3482877. (2/2)
2021-06-10 04:29:23 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-06-10 04:29:33 [INFO] Writing to disk...
2021-06-10 04:29:35 [INFO] Finished.
2021-08-06 12:19:00 [INFO] SPECIAL NOTE: 1bp_raw aggregate build failed due to memory issues. It was manually copied in from a version that Ruchi calculated separately.
2021-08-12 14:34:56 [INFO] Starting.
2021-08-12 14:34:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-12 14:34:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-12 14:34:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:34:57 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:34:57 [INFO] Writing every 10 Runs.
2021-08-12 14:34:57 [INFO] Processing SRX3482876. (1/2)
2021-08-12 14:34:57 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-12 14:35:09 [INFO] Processing SRX3482877. (2/2)
2021-08-12 14:35:09 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-12 14:35:21 [INFO] Writing to disk...
2021-08-12 14:35:23 [INFO] Finished.
2021-08-12 15:13:11 [INFO] Starting.
2021-08-12 15:13:11 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-12 15:13:11 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-12 15:13:11 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:13:12 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:13:12 [INFO] Writing every 10 Runs.
2021-08-12 15:13:12 [INFO] Processing SRX3482876. (1/2)
2021-08-12 15:13:12 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-12 15:13:22 [INFO] Processing SRX3482877. (2/2)
2021-08-12 15:13:22 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-12 15:13:34 [INFO] Writing to disk...
2021-08-12 15:13:35 [INFO] Finished.
2021-08-12 15:48:45 [INFO] Starting.
2021-08-12 15:48:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-12 15:48:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-12 15:48:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:48:45 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:48:45 [INFO] Writing every 10 Runs.
2021-08-12 15:48:45 [INFO] Processing SRX3482876. (1/2)
2021-08-12 15:48:45 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-12 15:48:58 [INFO] Processing SRX3482877. (2/2)
2021-08-12 15:48:58 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-12 15:49:12 [INFO] Writing to disk...
2021-08-12 15:49:14 [INFO] Finished.
2021-08-12 16:37:14 [INFO] Starting.
2021-08-12 16:37:14 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-12 16:37:14 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-12 16:37:14 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:37:15 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:37:15 [INFO] Writing every 10 Runs.
2021-08-12 16:37:15 [INFO] Processing SRX3482876. (1/2)
2021-08-12 16:37:15 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-12 16:37:31 [INFO] Processing SRX3482877. (2/2)
2021-08-12 16:37:31 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-12 16:37:49 [INFO] Writing to disk...
2021-08-12 16:37:53 [INFO] Finished.
2021-08-20 18:05:35 [INFO] Starting.
2021-08-20 18:05:35 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-20 18:05:35 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-20 18:05:35 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 18:05:36 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 18:05:36 [INFO] Writing every 10 Runs.
2021-08-20 18:05:36 [INFO] Processing SRX3482876. (1/2)
2021-08-20 18:05:36 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-20 18:05:43 [INFO] Processing SRX3482877. (2/2)
2021-08-20 18:05:43 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-20 18:05:51 [INFO] Writing to disk...
2021-08-20 18:05:51 [INFO] Finished.
2021-08-23 11:31:41 [INFO] Starting.
2021-08-23 11:31:41 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-23 11:31:41 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-23 11:31:41 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:31:42 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:31:42 [INFO] Writing every 10 Runs.
2021-08-23 11:31:42 [INFO] Processing SRX3482876. (1/2)
2021-08-23 11:31:42 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-23 11:31:48 [INFO] Processing SRX3482877. (2/2)
2021-08-23 11:31:48 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-23 11:31:54 [INFO] Writing to disk...
2021-08-23 11:31:54 [INFO] Finished.
2021-08-23 13:17:33 [INFO] Starting.
2021-08-23 13:17:33 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/
2021-08-23 13:17:33 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP103077/aggregate.hdf5
2021-08-23 13:17:33 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:17:33 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:17:33 [INFO] Writing every 10 Runs.
2021-08-23 13:17:33 [INFO] Processing SRX3482876. (1/2)
2021-08-23 13:17:33 [INFO] Processing SRX3482876-SRR6389422. (1/2)
2021-08-23 13:17:38 [INFO] Processing SRX3482877. (2/2)
2021-08-23 13:17:38 [INFO] Processing SRX3482877-SRR6389423. (2/2)
2021-08-23 13:17:43 [INFO] Writing to disk...
2021-08-23 13:17:43 [INFO] Finished.