2021-06-10 03:58:53 [INFO] Starting.
2021-06-10 03:58:53 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-06-10 03:58:53 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-06-10 03:58:53 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 03:58:53 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 03:58:54 [INFO] Building aggregate.
2021-06-10 03:58:54 [INFO] Writing every 10 Runs.
2021-06-10 03:58:54 [INFO] Processing SRX3992131. (1/6)
2021-06-10 03:58:54 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-06-10 03:59:08 [INFO] Processing SRX3992132. (2/6)
2021-06-10 03:59:08 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-06-10 03:59:25 [INFO] Processing SRX3992133. (3/6)
2021-06-10 03:59:25 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-06-10 03:59:38 [INFO] Processing SRX3992134. (4/6)
2021-06-10 03:59:38 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-06-10 04:00:07 [INFO] Processing SRX3992130. (5/6)
2021-06-10 04:00:07 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-06-10 04:00:26 [INFO] Processing SRX3992135. (6/6)
2021-06-10 04:00:26 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-06-10 04:00:43 [INFO] Writing to disk...
2021-06-10 04:01:02 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-02 17:08:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-02 17:08:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX3992131. (1/6)
2021-08-02 17:08:56 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-02 17:20:02 [INFO] Processing SRX3992132. (2/6)
2021-08-02 17:20:02 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-02 17:31:36 [INFO] Processing SRX3992133. (3/6)
2021-08-02 17:31:36 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-02 17:39:06 [INFO] Processing SRX3992134. (4/6)
2021-08-02 17:39:06 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-02 17:46:33 [INFO] Processing SRX3992130. (5/6)
2021-08-02 17:46:33 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-02 17:54:12 [INFO] Processing SRX3992135. (6/6)
2021-08-02 17:54:12 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-02 18:02:10 [INFO] Writing to disk...
2021-08-02 18:04:19 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX3992131. (1/6)
2021-08-12 14:31:18 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-12 14:31:40 [INFO] Processing SRX3992132. (2/6)
2021-08-12 14:31:41 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-12 14:32:03 [INFO] Processing SRX3992133. (3/6)
2021-08-12 14:32:03 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-12 14:32:22 [INFO] Processing SRX3992134. (4/6)
2021-08-12 14:32:22 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-12 14:32:43 [INFO] Processing SRX3992130. (5/6)
2021-08-12 14:32:43 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-12 14:33:05 [INFO] Processing SRX3992135. (6/6)
2021-08-12 14:33:05 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-12 14:33:32 [INFO] Writing to disk...
2021-08-12 14:33:42 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX3992131. (1/6)
2021-08-12 15:09:40 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-12 15:10:02 [INFO] Processing SRX3992132. (2/6)
2021-08-12 15:10:02 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-12 15:10:23 [INFO] Processing SRX3992133. (3/6)
2021-08-12 15:10:23 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-12 15:10:40 [INFO] Processing SRX3992134. (4/6)
2021-08-12 15:10:40 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-12 15:11:00 [INFO] Processing SRX3992130. (5/6)
2021-08-12 15:11:00 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-12 15:11:20 [INFO] Processing SRX3992135. (6/6)
2021-08-12 15:11:20 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-12 15:11:40 [INFO] Writing to disk...
2021-08-12 15:11:50 [INFO] Finished.
2021-08-12 15:44:38 [INFO] Starting.
2021-08-12 15:44:38 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-12 15:44:38 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-12 15:44:38 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:39 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:39 [INFO] Writing every 10 Runs.
2021-08-12 15:44:39 [INFO] Processing SRX3992131. (1/6)
2021-08-12 15:44:39 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-12 15:44:57 [INFO] Processing SRX3992132. (2/6)
2021-08-12 15:44:57 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-12 15:45:22 [INFO] Processing SRX3992133. (3/6)
2021-08-12 15:45:22 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-12 15:45:39 [INFO] Processing SRX3992134. (4/6)
2021-08-12 15:45:39 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-12 15:46:01 [INFO] Processing SRX3992130. (5/6)
2021-08-12 15:46:01 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-12 15:46:23 [INFO] Processing SRX3992135. (6/6)
2021-08-12 15:46:23 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-12 15:46:44 [INFO] Writing to disk...
2021-08-12 15:46:57 [INFO] Finished.
2021-08-12 16:32:28 [INFO] Starting.
2021-08-12 16:32:28 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-12 16:32:28 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-12 16:32:28 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:32:29 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:32:29 [INFO] Writing every 10 Runs.
2021-08-12 16:32:29 [INFO] Processing SRX3992131. (1/6)
2021-08-12 16:32:29 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-12 16:32:54 [INFO] Processing SRX3992132. (2/6)
2021-08-12 16:32:54 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-12 16:33:24 [INFO] Processing SRX3992133. (3/6)
2021-08-12 16:33:24 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-12 16:33:50 [INFO] Processing SRX3992134. (4/6)
2021-08-12 16:33:50 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-12 16:34:18 [INFO] Processing SRX3992130. (5/6)
2021-08-12 16:34:18 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-12 16:34:49 [INFO] Processing SRX3992135. (6/6)
2021-08-12 16:34:49 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-12 16:35:27 [INFO] Writing to disk...
2021-08-12 16:35:48 [INFO] Finished.
2021-08-20 17:58:57 [INFO] Starting.
2021-08-20 17:58:57 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-20 17:58:57 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-20 17:58:57 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:58:59 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:58:59 [INFO] Writing every 10 Runs.
2021-08-20 17:58:59 [INFO] Processing SRX3992131. (1/6)
2021-08-20 17:58:59 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-20 17:59:16 [INFO] Processing SRX3992132. (2/6)
2021-08-20 17:59:16 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-20 17:59:35 [INFO] Processing SRX3992133. (3/6)
2021-08-20 17:59:35 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-20 17:59:50 [INFO] Processing SRX3992134. (4/6)
2021-08-20 17:59:50 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-20 18:00:25 [INFO] Processing SRX3992130. (5/6)
2021-08-20 18:00:25 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-20 18:01:39 [INFO] Processing SRX3992135. (6/6)
2021-08-20 18:01:39 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-20 18:02:31 [INFO] Writing to disk...
2021-08-20 18:02:38 [INFO] Finished.
2021-08-23 11:30:08 [INFO] Starting.
2021-08-23 11:30:08 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-23 11:30:08 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-23 11:30:08 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:30:09 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:30:09 [INFO] Writing every 10 Runs.
2021-08-23 11:30:09 [INFO] Processing SRX3992131. (1/6)
2021-08-23 11:30:09 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-23 11:30:20 [INFO] Processing SRX3992132. (2/6)
2021-08-23 11:30:20 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-23 11:30:30 [INFO] Processing SRX3992133. (3/6)
2021-08-23 11:30:30 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-23 11:30:38 [INFO] Processing SRX3992134. (4/6)
2021-08-23 11:30:38 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-23 11:30:49 [INFO] Processing SRX3992130. (5/6)
2021-08-23 11:30:49 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-23 11:30:58 [INFO] Processing SRX3992135. (6/6)
2021-08-23 11:30:58 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-23 11:31:08 [INFO] Writing to disk...
2021-08-23 11:31:11 [INFO] Finished.
2021-08-23 13:16:45 [INFO] Starting.
2021-08-23 13:16:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/
2021-08-23 13:16:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP113633/aggregate.hdf5
2021-08-23 13:16:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:16:46 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:16:46 [INFO] Writing every 10 Runs.
2021-08-23 13:16:46 [INFO] Processing SRX3992131. (1/6)
2021-08-23 13:16:46 [INFO] Processing SRX3992131-SRR7061199. (1/6)
2021-08-23 13:16:52 [INFO] Processing SRX3992132. (2/6)
2021-08-23 13:16:52 [INFO] Processing SRX3992132-SRR7061200. (2/6)
2021-08-23 13:17:00 [INFO] Processing SRX3992133. (3/6)
2021-08-23 13:17:00 [INFO] Processing SRX3992133-SRR7061201. (3/6)
2021-08-23 13:17:06 [INFO] Processing SRX3992134. (4/6)
2021-08-23 13:17:06 [INFO] Processing SRX3992134-SRR7061202. (4/6)
2021-08-23 13:17:13 [INFO] Processing SRX3992130. (5/6)
2021-08-23 13:17:13 [INFO] Processing SRX3992130-SRR7061198. (5/6)
2021-08-23 13:17:19 [INFO] Processing SRX3992135. (6/6)
2021-08-23 13:17:19 [INFO] Processing SRX3992135-SRR7061203. (6/6)
2021-08-23 13:17:25 [INFO] Writing to disk...
2021-08-23 13:17:26 [INFO] Finished.