2021-06-10 02:06:21 [INFO] Starting.
2021-06-10 02:06:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-06-10 02:06:21 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-06-10 02:06:21 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 02:06:21 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 02:06:22 [INFO] Building aggregate.
2021-06-10 02:06:22 [INFO] Writing every 10 Runs.
2021-06-10 02:06:22 [INFO] Processing SRX3110763. (1/18)
2021-06-10 02:06:22 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-06-10 02:06:35 [INFO] Processing SRX3110769. (2/18)
2021-06-10 02:06:35 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-06-10 02:06:50 [INFO] Processing SRX3110761. (3/18)
2021-06-10 02:06:50 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-06-10 02:07:03 [INFO] Processing SRX3110759. (4/18)
2021-06-10 02:07:03 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-06-10 02:07:15 [INFO] Processing SRX3110768. (5/18)
2021-06-10 02:07:15 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-06-10 02:07:47 [INFO] Processing SRX3110752. (6/18)
2021-06-10 02:07:47 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-06-10 02:07:58 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-06-10 02:08:10 [INFO] Processing SRX3110762. (7/18)
2021-06-10 02:08:10 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-06-10 02:08:26 [INFO] Processing SRX3110766. (8/18)
2021-06-10 02:08:26 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-06-10 02:08:38 [INFO] Processing SRX3110756. (9/18)
2021-06-10 02:08:38 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-06-10 02:09:04 [INFO] Writing to disk...
2021-06-10 02:09:13 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-06-10 02:09:28 [INFO] Processing SRX3110767. (10/18)
2021-06-10 02:09:28 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-06-10 02:09:43 [INFO] Processing SRX3110765. (11/18)
2021-06-10 02:09:43 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-06-10 02:10:08 [INFO] Processing SRX3110755. (12/18)
2021-06-10 02:10:08 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-06-10 02:10:23 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-06-10 02:10:37 [INFO] Processing SRX3110758. (13/18)
2021-06-10 02:10:37 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-06-10 02:10:50 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-06-10 02:11:13 [INFO] Processing SRX3110753. (14/18)
2021-06-10 02:11:13 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-06-10 02:11:24 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-06-10 02:11:36 [INFO] Processing SRX3110764. (15/18)
2021-06-10 02:11:36 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-06-10 02:11:48 [INFO] Writing to disk...
2021-06-10 02:12:06 [INFO] Processing SRX3110754. (16/18)
2021-06-10 02:12:06 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-06-10 02:12:30 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-06-10 02:12:47 [INFO] Processing SRX3110760. (17/18)
2021-06-10 02:12:47 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-06-10 02:13:00 [INFO] Processing SRX3110757. (18/18)
2021-06-10 02:13:00 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-06-10 02:13:13 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-06-10 02:13:38 [INFO] Writing to disk...
2021-06-10 02:14:00 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-02 17:08:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-02 17:08:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX3110763. (1/18)
2021-08-02 17:08:56 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-04 22:04:09 [INFO] Starting.
2021-08-04 22:04:09 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-04 22:04:09 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-04 22:04:09 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-04 22:04:10 [INFO] Building aggregate for 1bp_raw network.
2021-08-04 22:04:10 [INFO] Writing every 10 Runs.
2021-08-04 22:04:10 [INFO] Processing SRX3110763. (1/18)
2021-08-04 22:04:10 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-04 22:07:36 [INFO] Processing SRX3110769. (2/18)
2021-08-04 22:07:36 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-04 22:15:33 [INFO] Processing SRX3110761. (3/18)
2021-08-04 22:15:33 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-04 22:23:08 [INFO] Processing SRX3110759. (4/18)
2021-08-04 22:23:08 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-04 22:30:27 [INFO] Processing SRX3110768. (5/18)
2021-08-04 22:30:27 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-04 22:37:44 [INFO] Processing SRX3110752. (6/18)
2021-08-04 22:37:44 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-04 22:44:57 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-04 22:52:10 [INFO] Processing SRX3110762. (7/18)
2021-08-04 22:52:10 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-04 22:59:34 [INFO] Processing SRX3110766. (8/18)
2021-08-04 22:59:34 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-04 23:06:55 [INFO] Processing SRX3110756. (9/18)
2021-08-04 23:06:55 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-04 23:14:00 [INFO] Writing to disk...
2021-08-04 23:15:16 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-04 23:22:18 [INFO] Processing SRX3110767. (10/18)
2021-08-04 23:22:18 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-04 23:29:50 [INFO] Processing SRX3110765. (11/18)
2021-08-04 23:29:50 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-04 23:37:11 [INFO] Processing SRX3110755. (12/18)
2021-08-04 23:37:11 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-04 23:44:33 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-04 23:51:42 [INFO] Processing SRX3110758. (13/18)
2021-08-04 23:51:42 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-04 23:59:13 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-05 00:06:37 [INFO] Processing SRX3110753. (14/18)
2021-08-05 00:06:37 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-05 00:13:58 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-05 00:21:19 [INFO] Processing SRX3110764. (15/18)
2021-08-05 00:21:19 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-05 00:28:44 [INFO] Writing to disk...
2021-08-05 00:30:26 [INFO] Processing SRX3110754. (16/18)
2021-08-05 00:30:26 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-05 00:37:52 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-05 00:45:24 [INFO] Processing SRX3110760. (17/18)
2021-08-05 00:45:24 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-05 00:53:07 [INFO] Processing SRX3110757. (18/18)
2021-08-05 00:53:07 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-05 01:01:25 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-05 01:11:25 [INFO] Writing to disk...
2021-08-05 01:13:29 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX3110763. (1/18)
2021-08-12 14:31:18 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-12 14:31:40 [INFO] Processing SRX3110769. (2/18)
2021-08-12 14:31:40 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-12 14:32:01 [INFO] Processing SRX3110761. (3/18)
2021-08-12 14:32:01 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-12 14:32:17 [INFO] Processing SRX3110759. (4/18)
2021-08-12 14:32:17 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-12 14:32:32 [INFO] Processing SRX3110768. (5/18)
2021-08-12 14:32:32 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-12 14:32:49 [INFO] Processing SRX3110752. (6/18)
2021-08-12 14:32:49 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-12 14:32:58 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-12 14:33:10 [INFO] Processing SRX3110762. (7/18)
2021-08-12 14:33:10 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-12 14:33:25 [INFO] Processing SRX3110766. (8/18)
2021-08-12 14:33:25 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-12 14:33:37 [INFO] Processing SRX3110756. (9/18)
2021-08-12 14:33:37 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-12 14:33:47 [INFO] Writing to disk...
2021-08-12 14:33:56 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-12 14:34:06 [INFO] Processing SRX3110767. (10/18)
2021-08-12 14:34:06 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-12 14:34:25 [INFO] Processing SRX3110765. (11/18)
2021-08-12 14:34:25 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-12 14:34:36 [INFO] Processing SRX3110755. (12/18)
2021-08-12 14:34:36 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-12 14:34:51 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-12 14:35:03 [INFO] Processing SRX3110758. (13/18)
2021-08-12 14:35:03 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-12 14:35:15 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-12 14:35:26 [INFO] Processing SRX3110753. (14/18)
2021-08-12 14:35:26 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-12 14:35:37 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-12 14:35:48 [INFO] Processing SRX3110764. (15/18)
2021-08-12 14:35:48 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-12 14:36:04 [INFO] Writing to disk...
2021-08-12 14:36:24 [INFO] Processing SRX3110754. (16/18)
2021-08-12 14:36:24 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-12 14:36:36 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-12 14:36:48 [INFO] Processing SRX3110760. (17/18)
2021-08-12 14:36:48 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-12 14:37:02 [INFO] Processing SRX3110757. (18/18)
2021-08-12 14:37:02 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-12 14:37:14 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-12 14:37:27 [INFO] Writing to disk...
2021-08-12 14:37:51 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX3110763. (1/18)
2021-08-12 15:09:40 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-12 15:10:02 [INFO] Processing SRX3110769. (2/18)
2021-08-12 15:10:02 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-12 15:10:19 [INFO] Processing SRX3110761. (3/18)
2021-08-12 15:10:19 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-12 15:10:36 [INFO] Processing SRX3110759. (4/18)
2021-08-12 15:10:36 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-12 15:10:51 [INFO] Processing SRX3110768. (5/18)
2021-08-12 15:10:51 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-12 15:11:07 [INFO] Processing SRX3110752. (6/18)
2021-08-12 15:11:07 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-12 15:11:18 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-12 15:11:30 [INFO] Processing SRX3110762. (7/18)
2021-08-12 15:11:30 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-12 15:11:44 [INFO] Processing SRX3110766. (8/18)
2021-08-12 15:11:44 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-12 15:11:55 [INFO] Processing SRX3110756. (9/18)
2021-08-12 15:11:55 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-12 15:12:10 [INFO] Writing to disk...
2021-08-12 15:12:19 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-12 15:12:32 [INFO] Processing SRX3110767. (10/18)
2021-08-12 15:12:32 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-12 15:12:49 [INFO] Processing SRX3110765. (11/18)
2021-08-12 15:12:49 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-12 15:13:01 [INFO] Processing SRX3110755. (12/18)
2021-08-12 15:13:01 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-12 15:13:19 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-12 15:13:33 [INFO] Processing SRX3110758. (13/18)
2021-08-12 15:13:33 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-12 15:13:48 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-12 15:14:03 [INFO] Processing SRX3110753. (14/18)
2021-08-12 15:14:03 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-12 15:14:16 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-12 15:14:27 [INFO] Processing SRX3110764. (15/18)
2021-08-12 15:14:27 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-12 15:14:41 [INFO] Writing to disk...
2021-08-12 15:14:58 [INFO] Processing SRX3110754. (16/18)
2021-08-12 15:14:58 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-12 15:15:16 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-12 15:15:30 [INFO] Processing SRX3110760. (17/18)
2021-08-12 15:15:30 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-12 15:15:48 [INFO] Processing SRX3110757. (18/18)
2021-08-12 15:15:48 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-12 15:16:02 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-12 15:16:13 [INFO] Writing to disk...
2021-08-12 15:16:34 [INFO] Finished.
2021-08-12 15:44:39 [INFO] Starting.
2021-08-12 15:44:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-12 15:44:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-12 15:44:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:40 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:40 [INFO] Writing every 10 Runs.
2021-08-12 15:44:40 [INFO] Processing SRX3110763. (1/18)
2021-08-12 15:44:40 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-12 15:45:03 [INFO] Processing SRX3110769. (2/18)
2021-08-12 15:45:03 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-12 15:45:24 [INFO] Processing SRX3110761. (3/18)
2021-08-12 15:45:24 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-12 15:45:43 [INFO] Processing SRX3110759. (4/18)
2021-08-12 15:45:43 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-12 15:46:02 [INFO] Processing SRX3110768. (5/18)
2021-08-12 15:46:02 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-12 15:46:21 [INFO] Processing SRX3110752. (6/18)
2021-08-12 15:46:21 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-12 15:46:34 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-12 15:46:50 [INFO] Processing SRX3110762. (7/18)
2021-08-12 15:46:50 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-12 15:47:08 [INFO] Processing SRX3110766. (8/18)
2021-08-12 15:47:08 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-12 15:47:24 [INFO] Processing SRX3110756. (9/18)
2021-08-12 15:47:24 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-12 15:47:44 [INFO] Writing to disk...
2021-08-12 15:47:56 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-12 15:48:16 [INFO] Processing SRX3110767. (10/18)
2021-08-12 15:48:16 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-12 15:48:40 [INFO] Processing SRX3110765. (11/18)
2021-08-12 15:48:40 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-12 15:48:59 [INFO] Processing SRX3110755. (12/18)
2021-08-12 15:48:59 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-12 15:49:25 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-12 15:49:48 [INFO] Processing SRX3110758. (13/18)
2021-08-12 15:49:48 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-12 15:50:05 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-12 15:50:24 [INFO] Processing SRX3110753. (14/18)
2021-08-12 15:50:24 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-12 15:50:38 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-12 15:50:52 [INFO] Processing SRX3110764. (15/18)
2021-08-12 15:50:52 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-12 15:51:13 [INFO] Writing to disk...
2021-08-12 15:51:37 [INFO] Processing SRX3110754. (16/18)
2021-08-12 15:51:37 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-12 15:51:55 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-12 15:52:17 [INFO] Processing SRX3110760. (17/18)
2021-08-12 15:52:17 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-12 15:52:39 [INFO] Processing SRX3110757. (18/18)
2021-08-12 15:52:39 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-12 15:52:59 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-12 15:53:18 [INFO] Writing to disk...
2021-08-12 15:53:42 [INFO] Finished.
2021-08-12 16:31:34 [INFO] Starting.
2021-08-12 16:31:34 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-12 16:31:34 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-12 16:31:34 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:31:35 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:31:35 [INFO] Writing every 10 Runs.
2021-08-12 16:31:35 [INFO] Processing SRX3110763. (1/18)
2021-08-12 16:31:35 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-12 16:32:00 [INFO] Processing SRX3110769. (2/18)
2021-08-12 16:32:00 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-12 16:32:22 [INFO] Processing SRX3110761. (3/18)
2021-08-12 16:32:22 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-12 16:32:43 [INFO] Processing SRX3110759. (4/18)
2021-08-12 16:32:43 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-12 16:33:03 [INFO] Processing SRX3110768. (5/18)
2021-08-12 16:33:03 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-12 16:33:26 [INFO] Processing SRX3110752. (6/18)
2021-08-12 16:33:26 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-12 16:33:43 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-12 16:33:59 [INFO] Processing SRX3110762. (7/18)
2021-08-12 16:33:59 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-12 16:34:19 [INFO] Processing SRX3110766. (8/18)
2021-08-12 16:34:19 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-12 16:34:41 [INFO] Processing SRX3110756. (9/18)
2021-08-12 16:34:41 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-12 16:35:04 [INFO] Writing to disk...
2021-08-12 16:35:19 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-12 16:35:46 [INFO] Processing SRX3110767. (10/18)
2021-08-12 16:35:46 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-12 16:36:16 [INFO] Processing SRX3110765. (11/18)
2021-08-12 16:36:16 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-12 16:36:39 [INFO] Processing SRX3110755. (12/18)
2021-08-12 16:36:39 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-12 16:37:07 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-12 16:37:34 [INFO] Processing SRX3110758. (13/18)
2021-08-12 16:37:34 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-12 16:38:03 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-12 16:38:29 [INFO] Processing SRX3110753. (14/18)
2021-08-12 16:38:29 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-12 16:38:55 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-12 16:39:18 [INFO] Processing SRX3110764. (15/18)
2021-08-12 16:39:18 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-12 16:39:44 [INFO] Writing to disk...
2021-08-12 16:40:14 [INFO] Processing SRX3110754. (16/18)
2021-08-12 16:40:14 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-12 16:40:41 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-12 16:41:11 [INFO] Processing SRX3110760. (17/18)
2021-08-12 16:41:11 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-12 16:41:40 [INFO] Processing SRX3110757. (18/18)
2021-08-12 16:41:40 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-12 16:42:13 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-12 16:42:38 [INFO] Writing to disk...
2021-08-12 16:43:13 [INFO] Finished.
2021-08-20 17:38:11 [INFO] Starting.
2021-08-20 17:38:11 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-20 17:38:11 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-20 17:38:11 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:38:12 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:38:12 [INFO] Writing every 10 Runs.
2021-08-20 17:38:12 [INFO] Processing SRX3110763. (1/18)
2021-08-20 17:38:12 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-20 17:38:29 [INFO] Processing SRX3110769. (2/18)
2021-08-20 17:38:29 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-20 17:38:46 [INFO] Processing SRX3110761. (3/18)
2021-08-20 17:38:46 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-20 17:39:02 [INFO] Processing SRX3110759. (4/18)
2021-08-20 17:39:02 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-20 17:39:16 [INFO] Processing SRX3110768. (5/18)
2021-08-20 17:39:16 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-20 17:39:28 [INFO] Processing SRX3110752. (6/18)
2021-08-20 17:39:28 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-20 17:39:37 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-20 17:39:47 [INFO] Processing SRX3110762. (7/18)
2021-08-20 17:39:47 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-20 17:40:00 [INFO] Processing SRX3110766. (8/18)
2021-08-20 17:40:00 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-20 17:40:11 [INFO] Processing SRX3110756. (9/18)
2021-08-20 17:40:11 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-20 17:40:18 [INFO] Writing to disk...
2021-08-20 17:40:24 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-20 17:40:33 [INFO] Processing SRX3110767. (10/18)
2021-08-20 17:40:33 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-20 17:40:48 [INFO] Processing SRX3110765. (11/18)
2021-08-20 17:40:48 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-20 17:40:57 [INFO] Processing SRX3110755. (12/18)
2021-08-20 17:40:57 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-20 17:41:11 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-20 17:41:22 [INFO] Processing SRX3110758. (13/18)
2021-08-20 17:41:22 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-20 17:41:34 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-20 17:41:44 [INFO] Processing SRX3110753. (14/18)
2021-08-20 17:41:44 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-20 17:41:53 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-20 17:42:01 [INFO] Processing SRX3110764. (15/18)
2021-08-20 17:42:01 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-20 17:42:11 [INFO] Writing to disk...
2021-08-20 17:42:27 [INFO] Processing SRX3110754. (16/18)
2021-08-20 17:42:27 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-20 17:42:37 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-20 17:42:47 [INFO] Processing SRX3110760. (17/18)
2021-08-20 17:42:47 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-20 17:42:59 [INFO] Processing SRX3110757. (18/18)
2021-08-20 17:42:59 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-20 17:43:10 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-20 17:43:23 [INFO] Writing to disk...
2021-08-20 17:43:39 [INFO] Finished.
2021-08-23 11:28:00 [INFO] Starting.
2021-08-23 11:28:00 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-23 11:28:00 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-23 11:28:00 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:28:01 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:28:01 [INFO] Writing every 10 Runs.
2021-08-23 11:28:01 [INFO] Processing SRX3110763. (1/18)
2021-08-23 11:28:01 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-23 11:28:10 [INFO] Processing SRX3110769. (2/18)
2021-08-23 11:28:10 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-23 11:28:18 [INFO] Processing SRX3110761. (3/18)
2021-08-23 11:28:18 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-23 11:28:25 [INFO] Processing SRX3110759. (4/18)
2021-08-23 11:28:25 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-23 11:28:33 [INFO] Processing SRX3110768. (5/18)
2021-08-23 11:28:33 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-23 11:28:39 [INFO] Processing SRX3110752. (6/18)
2021-08-23 11:28:39 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-23 11:28:45 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-23 11:28:50 [INFO] Processing SRX3110762. (7/18)
2021-08-23 11:28:50 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-23 11:28:57 [INFO] Processing SRX3110766. (8/18)
2021-08-23 11:28:57 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-23 11:29:02 [INFO] Processing SRX3110756. (9/18)
2021-08-23 11:29:02 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-23 11:29:05 [INFO] Writing to disk...
2021-08-23 11:29:06 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-23 11:29:10 [INFO] Processing SRX3110767. (10/18)
2021-08-23 11:29:10 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-23 11:29:16 [INFO] Processing SRX3110765. (11/18)
2021-08-23 11:29:16 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-23 11:29:22 [INFO] Processing SRX3110755. (12/18)
2021-08-23 11:29:22 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-23 11:29:29 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-23 11:29:36 [INFO] Processing SRX3110758. (13/18)
2021-08-23 11:29:36 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-23 11:29:40 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-23 11:29:46 [INFO] Processing SRX3110753. (14/18)
2021-08-23 11:29:46 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-23 11:29:51 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-23 11:29:55 [INFO] Processing SRX3110764. (15/18)
2021-08-23 11:29:55 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-23 11:30:01 [INFO] Writing to disk...
2021-08-23 11:30:08 [INFO] Processing SRX3110754. (16/18)
2021-08-23 11:30:08 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-23 11:30:14 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-23 11:30:21 [INFO] Processing SRX3110760. (17/18)
2021-08-23 11:30:21 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-23 11:30:29 [INFO] Processing SRX3110757. (18/18)
2021-08-23 11:30:29 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-23 11:30:35 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-23 11:30:43 [INFO] Writing to disk...
2021-08-23 11:30:51 [INFO] Finished.
2021-08-23 13:15:16 [INFO] Starting.
2021-08-23 13:15:16 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/
2021-08-23 13:15:16 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP115913/aggregate.hdf5
2021-08-23 13:15:16 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:15:17 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:15:17 [INFO] Writing every 10 Runs.
2021-08-23 13:15:17 [INFO] Processing SRX3110763. (1/18)
2021-08-23 13:15:17 [INFO] Processing SRX3110763-SRR5952304. (1/25)
2021-08-23 13:15:23 [INFO] Processing SRX3110769. (2/18)
2021-08-23 13:15:23 [INFO] Processing SRX3110769-SRR5952310. (2/25)
2021-08-23 13:15:29 [INFO] Processing SRX3110761. (3/18)
2021-08-23 13:15:29 [INFO] Processing SRX3110761-SRR5952302. (3/25)
2021-08-23 13:15:35 [INFO] Processing SRX3110759. (4/18)
2021-08-23 13:15:35 [INFO] Processing SRX3110759-SRR5952300. (4/25)
2021-08-23 13:15:39 [INFO] Processing SRX3110768. (5/18)
2021-08-23 13:15:39 [INFO] Processing SRX3110768-SRR5952309. (5/25)
2021-08-23 13:15:43 [INFO] Processing SRX3110752. (6/18)
2021-08-23 13:15:43 [INFO] Processing SRX3110752-SRR5952286. (6/25)
2021-08-23 13:15:46 [INFO] Processing SRX3110752-SRR5952287. (7/25)
2021-08-23 13:15:51 [INFO] Processing SRX3110762. (7/18)
2021-08-23 13:15:51 [INFO] Processing SRX3110762-SRR5952303. (8/25)
2021-08-23 13:15:56 [INFO] Processing SRX3110766. (8/18)
2021-08-23 13:15:56 [INFO] Processing SRX3110766-SRR5952307. (9/25)
2021-08-23 13:16:01 [INFO] Processing SRX3110756. (9/18)
2021-08-23 13:16:01 [INFO] Processing SRX3110756-SRR5952294. (10/25)
2021-08-23 13:16:04 [INFO] Writing to disk...
2021-08-23 13:16:05 [INFO] Processing SRX3110756-SRR5952295. (11/25)
2021-08-23 13:16:08 [INFO] Processing SRX3110767. (10/18)
2021-08-23 13:16:08 [INFO] Processing SRX3110767-SRR5952308. (12/25)
2021-08-23 13:16:12 [INFO] Processing SRX3110765. (11/18)
2021-08-23 13:16:12 [INFO] Processing SRX3110765-SRR5952306. (13/25)
2021-08-23 13:16:16 [INFO] Processing SRX3110755. (12/18)
2021-08-23 13:16:16 [INFO] Processing SRX3110755-SRR5952292. (14/25)
2021-08-23 13:16:22 [INFO] Processing SRX3110755-SRR5952293. (15/25)
2021-08-23 13:16:26 [INFO] Processing SRX3110758. (13/18)
2021-08-23 13:16:26 [INFO] Processing SRX3110758-SRR5952299. (16/25)
2021-08-23 13:16:31 [INFO] Processing SRX3110758-SRR5952298. (17/25)
2021-08-23 13:16:36 [INFO] Processing SRX3110753. (14/18)
2021-08-23 13:16:36 [INFO] Processing SRX3110753-SRR5952288. (18/25)
2021-08-23 13:16:39 [INFO] Processing SRX3110753-SRR5952289. (19/25)
2021-08-23 13:16:42 [INFO] Processing SRX3110764. (15/18)
2021-08-23 13:16:42 [INFO] Processing SRX3110764-SRR5952305. (20/25)
2021-08-23 13:16:47 [INFO] Writing to disk...
2021-08-23 13:16:48 [INFO] Processing SRX3110754. (16/18)
2021-08-23 13:16:48 [INFO] Processing SRX3110754-SRR5952291. (21/25)
2021-08-23 13:16:52 [INFO] Processing SRX3110754-SRR5952290. (22/25)
2021-08-23 13:16:56 [INFO] Processing SRX3110760. (17/18)
2021-08-23 13:16:56 [INFO] Processing SRX3110760-SRR5952301. (23/25)
2021-08-23 13:17:01 [INFO] Processing SRX3110757. (18/18)
2021-08-23 13:17:01 [INFO] Processing SRX3110757-SRR5952296. (24/25)
2021-08-23 13:17:06 [INFO] Processing SRX3110757-SRR5952297. (25/25)
2021-08-23 13:17:11 [INFO] Writing to disk...
2021-08-23 13:17:11 [INFO] Finished.