2021-06-10 03:50:02 [INFO] Starting.
2021-06-10 03:50:02 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-06-10 03:50:02 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-06-10 03:50:02 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 03:50:02 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 03:50:03 [INFO] Building aggregate.
2021-06-10 03:50:03 [INFO] Writing every 10 Runs.
2021-06-10 03:50:03 [INFO] Processing SRX6475056. (1/7)
2021-06-10 03:50:03 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-06-10 03:50:15 [INFO] Processing SRX3583136. (2/7)
2021-06-10 03:50:15 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-06-10 03:50:26 [INFO] Processing SRX6475057. (3/7)
2021-06-10 03:50:26 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-06-10 03:50:38 [INFO] Processing SRX3583134. (4/7)
2021-06-10 03:50:38 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-06-10 03:51:00 [INFO] Processing SRX6475055. (5/7)
2021-06-10 03:51:00 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-06-10 03:51:01 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-06-10 03:51:03 [INFO] Processing SRX3583137. (6/7)
2021-06-10 03:51:03 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-06-10 03:51:15 [INFO] Processing SRX3583135. (7/7)
2021-06-10 03:51:15 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-06-10 03:51:25 [INFO] Writing to disk...
2021-06-10 03:51:30 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:55 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-02 17:08:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-02 17:08:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX6475056. (1/7)
2021-08-02 17:08:56 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-02 17:45:53 [INFO] Processing SRX3583136. (2/7)
2021-08-02 17:45:53 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-02 18:01:47 [INFO] Processing SRX6475057. (3/7)
2021-08-02 18:01:47 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-02 18:09:38 [INFO] Processing SRX3583134. (4/7)
2021-08-02 18:09:38 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-02 18:16:25 [INFO] Processing SRX6475055. (5/7)
2021-08-02 18:16:25 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-02 18:22:14 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-02 18:27:33 [INFO] Processing SRX3583137. (6/7)
2021-08-02 18:27:33 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-02 18:33:59 [INFO] Processing SRX3583135. (7/7)
2021-08-02 18:33:59 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-02 18:40:24 [INFO] Writing to disk...
2021-08-02 18:41:23 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX6475056. (1/7)
2021-08-12 14:31:18 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-12 14:31:30 [INFO] Processing SRX3583136. (2/7)
2021-08-12 14:31:30 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-12 14:31:40 [INFO] Processing SRX6475057. (3/7)
2021-08-12 14:31:40 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-12 14:31:55 [INFO] Processing SRX3583134. (4/7)
2021-08-12 14:31:55 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-12 14:32:06 [INFO] Processing SRX6475055. (5/7)
2021-08-12 14:32:06 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-12 14:32:07 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-12 14:32:08 [INFO] Processing SRX3583137. (6/7)
2021-08-12 14:32:08 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-12 14:32:19 [INFO] Processing SRX3583135. (7/7)
2021-08-12 14:32:19 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-12 14:32:28 [INFO] Writing to disk...
2021-08-12 14:32:32 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX6475056. (1/7)
2021-08-12 15:09:40 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-12 15:09:53 [INFO] Processing SRX3583136. (2/7)
2021-08-12 15:09:53 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-12 15:10:03 [INFO] Processing SRX6475057. (3/7)
2021-08-12 15:10:03 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-12 15:10:17 [INFO] Processing SRX3583134. (4/7)
2021-08-12 15:10:17 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-12 15:10:27 [INFO] Processing SRX6475055. (5/7)
2021-08-12 15:10:27 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-12 15:10:29 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-12 15:10:31 [INFO] Processing SRX3583137. (6/7)
2021-08-12 15:10:31 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-12 15:10:41 [INFO] Processing SRX3583135. (7/7)
2021-08-12 15:10:41 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-12 15:10:53 [INFO] Writing to disk...
2021-08-12 15:10:57 [INFO] Finished.
2021-08-12 15:44:39 [INFO] Starting.
2021-08-12 15:44:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-12 15:44:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-12 15:44:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:40 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:40 [INFO] Writing every 10 Runs.
2021-08-12 15:44:40 [INFO] Processing SRX6475056. (1/7)
2021-08-12 15:44:40 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-12 15:44:55 [INFO] Processing SRX3583136. (2/7)
2021-08-12 15:44:55 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-12 15:45:07 [INFO] Processing SRX6475057. (3/7)
2021-08-12 15:45:07 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-12 15:45:23 [INFO] Processing SRX3583134. (4/7)
2021-08-12 15:45:23 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-12 15:45:34 [INFO] Processing SRX6475055. (5/7)
2021-08-12 15:45:34 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-12 15:45:36 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-12 15:45:39 [INFO] Processing SRX3583137. (6/7)
2021-08-12 15:45:39 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-12 15:45:54 [INFO] Processing SRX3583135. (7/7)
2021-08-12 15:45:54 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-12 15:46:07 [INFO] Writing to disk...
2021-08-12 15:46:15 [INFO] Finished.
2021-08-12 16:31:36 [INFO] Starting.
2021-08-12 16:31:36 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-12 16:31:36 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-12 16:31:36 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:31:37 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:31:37 [INFO] Writing every 10 Runs.
2021-08-12 16:31:37 [INFO] Processing SRX6475056. (1/7)
2021-08-12 16:31:37 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-12 16:31:51 [INFO] Processing SRX3583136. (2/7)
2021-08-12 16:31:51 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-12 16:32:03 [INFO] Processing SRX6475057. (3/7)
2021-08-12 16:32:03 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-12 16:32:17 [INFO] Processing SRX3583134. (4/7)
2021-08-12 16:32:17 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-12 16:32:27 [INFO] Processing SRX6475055. (5/7)
2021-08-12 16:32:27 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-12 16:32:30 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-12 16:32:31 [INFO] Processing SRX3583137. (6/7)
2021-08-12 16:32:31 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-12 16:32:45 [INFO] Processing SRX3583135. (7/7)
2021-08-12 16:32:45 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-12 16:32:57 [INFO] Writing to disk...
2021-08-12 16:33:05 [INFO] Finished.
2021-08-20 17:58:14 [INFO] Starting.
2021-08-20 17:58:14 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-20 17:58:14 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-20 17:58:14 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:58:15 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:58:15 [INFO] Writing every 10 Runs.
2021-08-20 17:58:15 [INFO] Processing SRX6475056. (1/7)
2021-08-20 17:58:15 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-20 17:58:25 [INFO] Processing SRX3583136. (2/7)
2021-08-20 17:58:25 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-20 17:58:34 [INFO] Processing SRX6475057. (3/7)
2021-08-20 17:58:34 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-20 17:58:44 [INFO] Processing SRX3583134. (4/7)
2021-08-20 17:58:44 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-20 17:58:51 [INFO] Processing SRX6475055. (5/7)
2021-08-20 17:58:51 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-20 17:58:52 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-20 17:58:54 [INFO] Processing SRX3583137. (6/7)
2021-08-20 17:58:54 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-20 17:59:03 [INFO] Processing SRX3583135. (7/7)
2021-08-20 17:59:03 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-20 17:59:11 [INFO] Writing to disk...
2021-08-20 17:59:14 [INFO] Finished.
2021-08-23 11:29:44 [INFO] Starting.
2021-08-23 11:29:44 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-23 11:29:44 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-23 11:29:44 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:29:45 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:29:45 [INFO] Writing every 10 Runs.
2021-08-23 11:29:45 [INFO] Processing SRX6475056. (1/7)
2021-08-23 11:29:45 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-23 11:29:51 [INFO] Processing SRX3583136. (2/7)
2021-08-23 11:29:51 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-23 11:29:55 [INFO] Processing SRX6475057. (3/7)
2021-08-23 11:29:55 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-23 11:30:01 [INFO] Processing SRX3583134. (4/7)
2021-08-23 11:30:01 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-23 11:30:06 [INFO] Processing SRX6475055. (5/7)
2021-08-23 11:30:06 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-23 11:30:07 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-23 11:30:07 [INFO] Processing SRX3583137. (6/7)
2021-08-23 11:30:07 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-23 11:30:13 [INFO] Processing SRX3583135. (7/7)
2021-08-23 11:30:13 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-23 11:30:19 [INFO] Writing to disk...
2021-08-23 11:30:20 [INFO] Finished.
2021-08-23 13:16:27 [INFO] Starting.
2021-08-23 13:16:27 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/
2021-08-23 13:16:27 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP130935/aggregate.hdf5
2021-08-23 13:16:27 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:16:27 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:16:27 [INFO] Writing every 10 Runs.
2021-08-23 13:16:27 [INFO] Processing SRX6475056. (1/7)
2021-08-23 13:16:27 [INFO] Processing SRX6475056-SRR9717203. (1/8)
2021-08-23 13:16:31 [INFO] Processing SRX3583136. (2/7)
2021-08-23 13:16:31 [INFO] Processing SRX3583136-SRR6493595. (2/8)
2021-08-23 13:16:35 [INFO] Processing SRX6475057. (3/7)
2021-08-23 13:16:35 [INFO] Processing SRX6475057-SRR9717204. (3/8)
2021-08-23 13:16:40 [INFO] Processing SRX3583134. (4/7)
2021-08-23 13:16:40 [INFO] Processing SRX3583134-SRR6493593. (4/8)
2021-08-23 13:16:44 [INFO] Processing SRX6475055. (5/7)
2021-08-23 13:16:44 [INFO] Processing SRX6475055-SRR9717201. (5/8)
2021-08-23 13:16:45 [INFO] Processing SRX6475055-SRR9717202. (6/8)
2021-08-23 13:16:45 [INFO] Processing SRX3583137. (6/7)
2021-08-23 13:16:45 [INFO] Processing SRX3583137-SRR6493596. (7/8)
2021-08-23 13:16:49 [INFO] Processing SRX3583135. (7/7)
2021-08-23 13:16:49 [INFO] Processing SRX3583135-SRR6493594. (8/8)
2021-08-23 13:16:53 [INFO] Writing to disk...
2021-08-23 13:16:54 [INFO] Finished.