2021-06-10 04:25:50 [INFO] Starting.
2021-06-10 04:25:50 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-06-10 04:25:50 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-06-10 04:25:50 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 04:25:50 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 04:25:51 [INFO] Building aggregate.
2021-06-10 04:25:51 [INFO] Writing every 10 Runs.
2021-06-10 04:25:51 [INFO] Processing SRX4734155. (1/2)
2021-06-10 04:25:51 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-06-10 04:26:04 [INFO] Processing SRX4734156. (2/2)
2021-06-10 04:26:04 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-06-10 04:26:17 [INFO] Writing to disk...
2021-06-10 04:26:21 [INFO] Finished.
2021-08-06 12:19:00 [INFO] SPECIAL NOTE: 1bp_raw aggregate build failed due to memory issues. It was manually copied in from a version that Ruchi calculated separately.
2021-08-12 14:34:35 [INFO] Starting.
2021-08-12 14:34:35 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-12 14:34:35 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-12 14:34:35 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:34:36 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:34:36 [INFO] Writing every 10 Runs.
2021-08-12 14:34:36 [INFO] Processing SRX4734155. (1/2)
2021-08-12 14:34:36 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-12 14:34:55 [INFO] Processing SRX4734156. (2/2)
2021-08-12 14:34:55 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-12 14:35:19 [INFO] Writing to disk...
2021-08-12 14:35:23 [INFO] Finished.
2021-08-12 15:13:04 [INFO] Starting.
2021-08-12 15:13:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-12 15:13:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-12 15:13:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:13:05 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:13:05 [INFO] Writing every 10 Runs.
2021-08-12 15:13:05 [INFO] Processing SRX4734155. (1/2)
2021-08-12 15:13:05 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-12 15:13:24 [INFO] Processing SRX4734156. (2/2)
2021-08-12 15:13:24 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-12 15:13:46 [INFO] Writing to disk...
2021-08-12 15:13:50 [INFO] Finished.
2021-08-12 15:48:05 [INFO] Starting.
2021-08-12 15:48:05 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-12 15:48:05 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-12 15:48:05 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:48:06 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:48:06 [INFO] Writing every 10 Runs.
2021-08-12 15:48:06 [INFO] Processing SRX4734155. (1/2)
2021-08-12 15:48:06 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-12 15:48:27 [INFO] Processing SRX4734156. (2/2)
2021-08-12 15:48:27 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-12 15:48:51 [INFO] Writing to disk...
2021-08-12 15:48:55 [INFO] Finished.
2021-08-12 16:36:52 [INFO] Starting.
2021-08-12 16:36:52 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-12 16:36:52 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-12 16:36:52 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:36:53 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:36:53 [INFO] Writing every 10 Runs.
2021-08-12 16:36:53 [INFO] Processing SRX4734155. (1/2)
2021-08-12 16:36:53 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-12 16:37:17 [INFO] Processing SRX4734156. (2/2)
2021-08-12 16:37:17 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-12 16:37:48 [INFO] Writing to disk...
2021-08-12 16:37:56 [INFO] Finished.
2021-08-20 18:04:58 [INFO] Starting.
2021-08-20 18:04:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-20 18:04:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-20 18:04:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 18:04:59 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 18:04:59 [INFO] Writing every 10 Runs.
2021-08-20 18:04:59 [INFO] Processing SRX4734155. (1/2)
2021-08-20 18:04:59 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-20 18:05:32 [INFO] Processing SRX4734156. (2/2)
2021-08-20 18:05:32 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-20 18:05:48 [INFO] Writing to disk...
2021-08-20 18:05:50 [INFO] Finished.
2021-08-23 11:31:38 [INFO] Starting.
2021-08-23 11:31:38 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-23 11:31:38 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-23 11:31:38 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:31:39 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:31:39 [INFO] Writing every 10 Runs.
2021-08-23 11:31:39 [INFO] Processing SRX4734155. (1/2)
2021-08-23 11:31:39 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-23 11:31:51 [INFO] Processing SRX4734156. (2/2)
2021-08-23 11:31:51 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-23 11:32:02 [INFO] Writing to disk...
2021-08-23 11:32:03 [INFO] Finished.
2021-08-23 13:17:29 [INFO] Starting.
2021-08-23 13:17:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/
2021-08-23 13:17:29 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP152361/aggregate.hdf5
2021-08-23 13:17:29 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:17:30 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:17:30 [INFO] Writing every 10 Runs.
2021-08-23 13:17:30 [INFO] Processing SRX4734155. (1/2)
2021-08-23 13:17:30 [INFO] Processing SRX4734155-SRR7896721. (1/2)
2021-08-23 13:17:37 [INFO] Processing SRX4734156. (2/2)
2021-08-23 13:17:37 [INFO] Processing SRX4734156-SRR7896722. (2/2)
2021-08-23 13:17:45 [INFO] Writing to disk...
2021-08-23 13:17:46 [INFO] Finished.