2021-06-10 03:52:45 [INFO] Starting.
2021-06-10 03:52:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-06-10 03:52:45 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-06-10 03:52:45 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 03:52:45 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 03:52:45 [INFO] Building aggregate.
2021-06-10 03:52:45 [INFO] Writing every 10 Runs.
2021-06-10 03:52:45 [INFO] Processing SRX4559658. (1/7)
2021-06-10 03:52:45 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-06-10 03:53:18 [INFO] Processing SRX5253426. (2/7)
2021-06-10 03:53:18 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-06-10 03:53:49 [INFO] Processing SRX5253429. (3/7)
2021-06-10 03:53:49 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-06-10 03:54:25 [INFO] Processing SRX5253425. (4/7)
2021-06-10 03:54:25 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-06-10 03:55:01 [INFO] Processing SRX5253427. (5/7)
2021-06-10 03:55:01 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-06-10 03:55:35 [INFO] Processing SRX4559657. (6/7)
2021-06-10 03:55:35 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-06-10 03:56:27 [INFO] Processing SRX5253428. (7/7)
2021-06-10 03:56:27 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-06-10 03:57:04 [INFO] Writing to disk...
2021-06-10 03:57:38 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-02 17:08:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-02 17:08:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX4559658. (1/7)
2021-08-02 17:08:56 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-02 17:48:36 [INFO] Processing SRX5253426. (2/7)
2021-08-02 17:48:36 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-02 18:02:48 [INFO] Processing SRX5253429. (3/7)
2021-08-02 18:02:48 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-02 18:11:12 [INFO] Processing SRX5253425. (4/7)
2021-08-02 18:11:12 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-02 18:18:32 [INFO] Processing SRX5253427. (5/7)
2021-08-02 18:18:32 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-02 18:25:45 [INFO] Processing SRX4559657. (6/7)
2021-08-02 18:25:45 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-02 18:33:24 [INFO] Processing SRX5253428. (7/7)
2021-08-02 18:33:24 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-02 18:41:08 [INFO] Writing to disk...
2021-08-02 18:42:55 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX4559658. (1/7)
2021-08-12 14:31:18 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-12 14:31:58 [INFO] Processing SRX5253426. (2/7)
2021-08-12 14:31:58 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-12 14:32:34 [INFO] Processing SRX5253429. (3/7)
2021-08-12 14:32:34 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-12 14:33:14 [INFO] Processing SRX5253425. (4/7)
2021-08-12 14:33:14 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-12 14:33:47 [INFO] Processing SRX5253427. (5/7)
2021-08-12 14:33:47 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-12 14:34:23 [INFO] Processing SRX4559657. (6/7)
2021-08-12 14:34:23 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-12 14:35:05 [INFO] Processing SRX5253428. (7/7)
2021-08-12 14:35:05 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-12 14:35:47 [INFO] Writing to disk...
2021-08-12 14:36:14 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX4559658. (1/7)
2021-08-12 15:09:40 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-12 15:10:13 [INFO] Processing SRX5253426. (2/7)
2021-08-12 15:10:13 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-12 15:10:43 [INFO] Processing SRX5253429. (3/7)
2021-08-12 15:10:43 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-12 15:11:17 [INFO] Processing SRX5253425. (4/7)
2021-08-12 15:11:17 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-12 15:11:50 [INFO] Processing SRX5253427. (5/7)
2021-08-12 15:11:50 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-12 15:12:21 [INFO] Processing SRX4559657. (6/7)
2021-08-12 15:12:21 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-12 15:12:57 [INFO] Processing SRX5253428. (7/7)
2021-08-12 15:12:57 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-12 15:13:30 [INFO] Writing to disk...
2021-08-12 15:13:50 [INFO] Finished.
2021-08-12 15:44:41 [INFO] Starting.
2021-08-12 15:44:41 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-12 15:44:41 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-12 15:44:41 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:42 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:42 [INFO] Writing every 10 Runs.
2021-08-12 15:44:42 [INFO] Processing SRX4559658. (1/7)
2021-08-12 15:44:42 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-12 15:45:25 [INFO] Processing SRX5253426. (2/7)
2021-08-12 15:45:25 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-12 15:46:07 [INFO] Processing SRX5253429. (3/7)
2021-08-12 15:46:07 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-12 15:46:47 [INFO] Processing SRX5253425. (4/7)
2021-08-12 15:46:47 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-12 15:47:28 [INFO] Processing SRX5253427. (5/7)
2021-08-12 15:47:28 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-12 15:48:11 [INFO] Processing SRX4559657. (6/7)
2021-08-12 15:48:11 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-12 15:49:12 [INFO] Processing SRX5253428. (7/7)
2021-08-12 15:49:12 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-12 15:49:58 [INFO] Writing to disk...
2021-08-12 15:50:25 [INFO] Finished.
2021-08-12 16:31:36 [INFO] Starting.
2021-08-12 16:31:36 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-12 16:31:36 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-12 16:31:36 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:31:37 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:31:37 [INFO] Writing every 10 Runs.
2021-08-12 16:31:37 [INFO] Processing SRX4559658. (1/7)
2021-08-12 16:31:37 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-12 16:32:18 [INFO] Processing SRX5253426. (2/7)
2021-08-12 16:32:18 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-12 16:33:00 [INFO] Processing SRX5253429. (3/7)
2021-08-12 16:33:00 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-12 16:33:44 [INFO] Processing SRX5253425. (4/7)
2021-08-12 16:33:44 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-12 16:34:29 [INFO] Processing SRX5253427. (5/7)
2021-08-12 16:34:29 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-12 16:35:08 [INFO] Processing SRX4559657. (6/7)
2021-08-12 16:35:08 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-12 16:36:20 [INFO] Processing SRX5253428. (7/7)
2021-08-12 16:36:20 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-12 16:37:15 [INFO] Writing to disk...
2021-08-12 16:37:58 [INFO] Finished.
2021-08-20 17:58:25 [INFO] Starting.
2021-08-20 17:58:25 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-20 17:58:25 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-20 17:58:25 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:58:26 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:58:26 [INFO] Writing every 10 Runs.
2021-08-20 17:58:26 [INFO] Processing SRX4559658. (1/7)
2021-08-20 17:58:26 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-20 17:58:58 [INFO] Processing SRX5253426. (2/7)
2021-08-20 17:58:58 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-20 17:59:27 [INFO] Processing SRX5253429. (3/7)
2021-08-20 17:59:27 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-20 17:59:57 [INFO] Processing SRX5253425. (4/7)
2021-08-20 17:59:57 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-20 18:01:37 [INFO] Processing SRX5253427. (5/7)
2021-08-20 18:01:37 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-20 18:02:39 [INFO] Processing SRX4559657. (6/7)
2021-08-20 18:02:39 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-20 18:04:08 [INFO] Processing SRX5253428. (7/7)
2021-08-20 18:04:08 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-20 18:04:39 [INFO] Writing to disk...
2021-08-20 18:04:54 [INFO] Finished.
2021-08-23 11:29:48 [INFO] Starting.
2021-08-23 11:29:48 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-23 11:29:48 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-23 11:29:48 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:29:48 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:29:48 [INFO] Writing every 10 Runs.
2021-08-23 11:29:48 [INFO] Processing SRX4559658. (1/7)
2021-08-23 11:29:48 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-23 11:30:01 [INFO] Processing SRX5253426. (2/7)
2021-08-23 11:30:01 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-23 11:30:16 [INFO] Processing SRX5253429. (3/7)
2021-08-23 11:30:16 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-23 11:30:32 [INFO] Processing SRX5253425. (4/7)
2021-08-23 11:30:32 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-23 11:30:46 [INFO] Processing SRX5253427. (5/7)
2021-08-23 11:30:46 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-23 11:31:02 [INFO] Processing SRX4559657. (6/7)
2021-08-23 11:31:02 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-23 11:31:18 [INFO] Processing SRX5253428. (7/7)
2021-08-23 11:31:18 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-23 11:31:36 [INFO] Writing to disk...
2021-08-23 11:31:39 [INFO] Finished.
2021-08-23 13:16:27 [INFO] Starting.
2021-08-23 13:16:27 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/
2021-08-23 13:16:27 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP158113/aggregate.hdf5
2021-08-23 13:16:27 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:16:27 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:16:27 [INFO] Writing every 10 Runs.
2021-08-23 13:16:27 [INFO] Processing SRX4559658. (1/7)
2021-08-23 13:16:27 [INFO] Processing SRX4559658-SRR7702335. (1/7)
2021-08-23 13:16:35 [INFO] Processing SRX5253426. (2/7)
2021-08-23 13:16:35 [INFO] Processing SRX5253426-SRR8446384. (2/7)
2021-08-23 13:16:43 [INFO] Processing SRX5253429. (3/7)
2021-08-23 13:16:43 [INFO] Processing SRX5253429-SRR8446387. (3/7)
2021-08-23 13:16:50 [INFO] Processing SRX5253425. (4/7)
2021-08-23 13:16:50 [INFO] Processing SRX5253425-SRR8446383. (4/7)
2021-08-23 13:16:57 [INFO] Processing SRX5253427. (5/7)
2021-08-23 13:16:57 [INFO] Processing SRX5253427-SRR8446385. (5/7)
2021-08-23 13:17:04 [INFO] Processing SRX4559657. (6/7)
2021-08-23 13:17:04 [INFO] Processing SRX4559657-SRR7702334. (6/7)
2021-08-23 13:17:13 [INFO] Processing SRX5253428. (7/7)
2021-08-23 13:17:13 [INFO] Processing SRX5253428-SRR8446386. (7/7)
2021-08-23 13:17:20 [INFO] Writing to disk...
2021-08-23 13:17:21 [INFO] Finished.