2021-06-10 03:11:54 [INFO] Starting.
2021-06-10 03:11:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-06-10 03:11:54 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-06-10 03:11:54 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 03:11:54 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 03:11:55 [INFO] Building aggregate.
2021-06-10 03:11:55 [INFO] Writing every 10 Runs.
2021-06-10 03:11:55 [INFO] Processing SRX6770556. (1/6)
2021-06-10 03:11:55 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-06-10 03:12:08 [INFO] Processing SRX6770557. (2/6)
2021-06-10 03:12:08 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-06-10 03:12:24 [INFO] Processing SRX6770558. (3/6)
2021-06-10 03:12:24 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-06-10 03:12:40 [INFO] Processing SRX6770560. (4/6)
2021-06-10 03:12:40 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-06-10 03:12:49 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-06-10 03:13:00 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-06-10 03:13:13 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-06-10 03:13:26 [INFO] Processing SRX6770555. (5/6)
2021-06-10 03:13:26 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-06-10 03:13:41 [INFO] Processing SRX6770559. (6/6)
2021-06-10 03:13:41 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-06-10 03:13:51 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-06-10 03:14:21 [INFO] Writing to disk...
2021-06-10 03:14:28 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-06-10 03:14:43 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-06-10 03:14:55 [INFO] Writing to disk...
2021-06-10 03:15:08 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-02 17:08:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-02 17:08:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX6770556. (1/6)
2021-08-02 17:08:56 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-04 22:05:04 [INFO] Starting.
2021-08-04 22:05:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-04 22:05:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-04 22:05:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-04 22:05:05 [INFO] Building aggregate for 1bp_raw network.
2021-08-04 22:05:05 [INFO] Writing every 10 Runs.
2021-08-04 22:05:05 [INFO] Processing SRX6770556. (1/6)
2021-08-04 22:05:05 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-04 22:08:33 [INFO] Processing SRX6770557. (2/6)
2021-08-04 22:08:33 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-04 22:16:50 [INFO] Processing SRX6770558. (3/6)
2021-08-04 22:16:50 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-04 22:24:43 [INFO] Processing SRX6770560. (4/6)
2021-08-04 22:24:43 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-04 22:32:25 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-04 22:39:50 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-04 22:47:08 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-04 22:54:38 [INFO] Processing SRX6770555. (5/6)
2021-08-04 22:54:38 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-04 23:01:54 [INFO] Processing SRX6770559. (6/6)
2021-08-04 23:01:54 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-04 23:09:20 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-04 23:16:36 [INFO] Writing to disk...
2021-08-04 23:17:41 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-04 23:24:51 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-04 23:32:14 [INFO] Writing to disk...
2021-08-04 23:33:21 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX6770556. (1/6)
2021-08-12 14:31:18 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-12 14:31:33 [INFO] Processing SRX6770557. (2/6)
2021-08-12 14:31:33 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-12 14:31:47 [INFO] Processing SRX6770558. (3/6)
2021-08-12 14:31:47 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-12 14:32:02 [INFO] Processing SRX6770560. (4/6)
2021-08-12 14:32:02 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-12 14:32:13 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-12 14:32:24 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-12 14:32:35 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-12 14:32:45 [INFO] Processing SRX6770555. (5/6)
2021-08-12 14:32:45 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-12 14:32:58 [INFO] Processing SRX6770559. (6/6)
2021-08-12 14:32:58 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-12 14:33:10 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-12 14:33:23 [INFO] Writing to disk...
2021-08-12 14:33:29 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-12 14:33:42 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-12 14:33:56 [INFO] Writing to disk...
2021-08-12 14:34:09 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX6770556. (1/6)
2021-08-12 15:09:40 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-12 15:09:54 [INFO] Processing SRX6770557. (2/6)
2021-08-12 15:09:54 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-12 15:10:08 [INFO] Processing SRX6770558. (3/6)
2021-08-12 15:10:08 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-12 15:10:23 [INFO] Processing SRX6770560. (4/6)
2021-08-12 15:10:23 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-12 15:10:33 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-12 15:10:43 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-12 15:10:54 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-12 15:11:05 [INFO] Processing SRX6770555. (5/6)
2021-08-12 15:11:05 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-12 15:11:19 [INFO] Processing SRX6770559. (6/6)
2021-08-12 15:11:19 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-12 15:11:30 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-12 15:11:44 [INFO] Writing to disk...
2021-08-12 15:11:50 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-12 15:12:03 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-12 15:12:18 [INFO] Writing to disk...
2021-08-12 15:12:24 [INFO] Finished.
2021-08-12 15:44:39 [INFO] Starting.
2021-08-12 15:44:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-12 15:44:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-12 15:44:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:39 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:39 [INFO] Writing every 10 Runs.
2021-08-12 15:44:39 [INFO] Processing SRX6770556. (1/6)
2021-08-12 15:44:39 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-12 15:44:57 [INFO] Processing SRX6770557. (2/6)
2021-08-12 15:44:57 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-12 15:45:13 [INFO] Processing SRX6770558. (3/6)
2021-08-12 15:45:13 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-12 15:45:29 [INFO] Processing SRX6770560. (4/6)
2021-08-12 15:45:29 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-12 15:45:42 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-12 15:45:54 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-12 15:46:08 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-12 15:46:21 [INFO] Processing SRX6770555. (5/6)
2021-08-12 15:46:21 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-12 15:46:40 [INFO] Processing SRX6770559. (6/6)
2021-08-12 15:46:40 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-12 15:46:54 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-12 15:47:11 [INFO] Writing to disk...
2021-08-12 15:47:20 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-12 15:47:36 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-12 15:47:52 [INFO] Writing to disk...
2021-08-12 15:48:03 [INFO] Finished.
2021-08-12 16:31:34 [INFO] Starting.
2021-08-12 16:31:34 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-12 16:31:34 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-12 16:31:34 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:31:35 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:31:35 [INFO] Writing every 10 Runs.
2021-08-12 16:31:35 [INFO] Processing SRX6770556. (1/6)
2021-08-12 16:31:35 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-12 16:31:53 [INFO] Processing SRX6770557. (2/6)
2021-08-12 16:31:53 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-12 16:32:10 [INFO] Processing SRX6770558. (3/6)
2021-08-12 16:32:10 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-12 16:32:30 [INFO] Processing SRX6770560. (4/6)
2021-08-12 16:32:30 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-12 16:32:43 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-12 16:32:57 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-12 16:33:10 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-12 16:33:23 [INFO] Processing SRX6770555. (5/6)
2021-08-12 16:33:23 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-12 16:33:40 [INFO] Processing SRX6770559. (6/6)
2021-08-12 16:33:40 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-12 16:33:55 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-12 16:34:13 [INFO] Writing to disk...
2021-08-12 16:34:25 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-12 16:34:45 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-12 16:35:04 [INFO] Writing to disk...
2021-08-12 16:35:30 [INFO] Finished.
2021-08-20 17:51:00 [INFO] Starting.
2021-08-20 17:51:00 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-20 17:51:00 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-20 17:51:00 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:51:02 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:51:02 [INFO] Writing every 10 Runs.
2021-08-20 17:51:02 [INFO] Processing SRX6770556. (1/6)
2021-08-20 17:51:02 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-20 17:51:15 [INFO] Processing SRX6770557. (2/6)
2021-08-20 17:51:15 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-20 17:51:28 [INFO] Processing SRX6770558. (3/6)
2021-08-20 17:51:28 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-20 17:51:42 [INFO] Processing SRX6770560. (4/6)
2021-08-20 17:51:42 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-20 17:51:50 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-20 17:51:59 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-20 17:52:09 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-20 17:52:19 [INFO] Processing SRX6770555. (5/6)
2021-08-20 17:52:19 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-20 17:52:31 [INFO] Processing SRX6770559. (6/6)
2021-08-20 17:52:31 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-20 17:52:42 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-20 17:52:54 [INFO] Writing to disk...
2021-08-20 17:52:59 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-20 17:53:10 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-20 17:53:22 [INFO] Writing to disk...
2021-08-20 17:53:25 [INFO] Finished.
2021-08-23 11:28:00 [INFO] Starting.
2021-08-23 11:28:00 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-23 11:28:00 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-23 11:28:00 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:28:01 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:28:01 [INFO] Writing every 10 Runs.
2021-08-23 11:28:01 [INFO] Processing SRX6770556. (1/6)
2021-08-23 11:28:01 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-23 11:28:08 [INFO] Processing SRX6770557. (2/6)
2021-08-23 11:28:08 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-23 11:28:16 [INFO] Processing SRX6770558. (3/6)
2021-08-23 11:28:16 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-23 11:28:23 [INFO] Processing SRX6770560. (4/6)
2021-08-23 11:28:23 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-23 11:28:28 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-23 11:28:33 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-23 11:28:39 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-23 11:28:45 [INFO] Processing SRX6770555. (5/6)
2021-08-23 11:28:45 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-23 11:28:53 [INFO] Processing SRX6770559. (6/6)
2021-08-23 11:28:53 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-23 11:29:00 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-23 11:29:07 [INFO] Writing to disk...
2021-08-23 11:29:08 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-23 11:29:15 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-23 11:29:22 [INFO] Writing to disk...
2021-08-23 11:29:23 [INFO] Finished.
2021-08-23 13:15:16 [INFO] Starting.
2021-08-23 13:15:16 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/
2021-08-23 13:15:16 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP186012/aggregate.hdf5
2021-08-23 13:15:16 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:15:16 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:15:16 [INFO] Writing every 10 Runs.
2021-08-23 13:15:16 [INFO] Processing SRX6770556. (1/6)
2021-08-23 13:15:16 [INFO] Processing SRX6770556-SRR10035373. (1/12)
2021-08-23 13:15:22 [INFO] Processing SRX6770557. (2/6)
2021-08-23 13:15:22 [INFO] Processing SRX6770557-SRR10035374. (2/12)
2021-08-23 13:15:28 [INFO] Processing SRX6770558. (3/6)
2021-08-23 13:15:28 [INFO] Processing SRX6770558-SRR10035375. (3/12)
2021-08-23 13:15:35 [INFO] Processing SRX6770560. (4/6)
2021-08-23 13:15:35 [INFO] Processing SRX6770560-SRR10035381. (4/12)
2021-08-23 13:15:38 [INFO] Processing SRX6770560-SRR10035380. (5/12)
2021-08-23 13:15:43 [INFO] Processing SRX6770560-SRR10035382. (6/12)
2021-08-23 13:15:48 [INFO] Processing SRX6770560-SRR10035383. (7/12)
2021-08-23 13:15:52 [INFO] Processing SRX6770555. (5/6)
2021-08-23 13:15:52 [INFO] Processing SRX6770555-SRR10035372. (8/12)
2021-08-23 13:15:58 [INFO] Processing SRX6770559. (6/6)
2021-08-23 13:15:58 [INFO] Processing SRX6770559-SRR10035377. (9/12)
2021-08-23 13:16:02 [INFO] Processing SRX6770559-SRR10035378. (10/12)
2021-08-23 13:16:06 [INFO] Writing to disk...
2021-08-23 13:16:06 [INFO] Processing SRX6770559-SRR10035376. (11/12)
2021-08-23 13:16:10 [INFO] Processing SRX6770559-SRR10035379. (12/12)
2021-08-23 13:16:15 [INFO] Writing to disk...
2021-08-23 13:16:16 [INFO] Finished.