2021-06-10 03:17:25 [INFO] Starting.
2021-06-10 03:17:25 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-06-10 03:17:25 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-06-10 03:17:25 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 03:17:25 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 03:17:26 [INFO] Building aggregate.
2021-06-10 03:17:26 [INFO] Writing every 10 Runs.
2021-06-10 03:17:26 [INFO] Processing SRX5773151. (1/10)
2021-06-10 03:17:26 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-06-10 03:17:55 [INFO] Processing SRX5773152. (2/10)
2021-06-10 03:17:55 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-06-10 03:18:18 [INFO] Processing SRX5773147. (3/10)
2021-06-10 03:18:18 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-06-10 03:18:27 [INFO] Processing SRX5773146. (4/10)
2021-06-10 03:18:27 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-06-10 03:18:34 [INFO] Processing SRX5773145. (5/10)
2021-06-10 03:18:34 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-06-10 03:18:45 [INFO] Processing SRX5773149. (6/10)
2021-06-10 03:18:45 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-06-10 03:19:06 [INFO] Processing SRX5773144. (7/10)
2021-06-10 03:19:06 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-06-10 03:19:25 [INFO] Processing SRX5773150. (8/10)
2021-06-10 03:19:25 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-06-10 03:19:54 [INFO] Processing SRX5773148. (9/10)
2021-06-10 03:19:54 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-06-10 03:20:16 [INFO] Processing SRX5773153. (10/10)
2021-06-10 03:20:16 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-06-10 03:20:49 [INFO] Writing to disk...
2021-06-10 03:21:03 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:55 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-02 17:08:55 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-02 17:08:55 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX5773151. (1/10)
2021-08-02 17:08:56 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-02 17:14:03 [INFO] Processing SRX5773152. (2/10)
2021-08-02 17:14:03 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-02 17:27:38 [INFO] Processing SRX5773147. (3/10)
2021-08-02 17:27:38 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-02 17:35:20 [INFO] Processing SRX5773146. (4/10)
2021-08-02 17:35:20 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-02 17:42:45 [INFO] Processing SRX5773145. (5/10)
2021-08-02 17:42:45 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-02 17:50:41 [INFO] Processing SRX5773149. (6/10)
2021-08-02 17:50:41 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-02 17:58:29 [INFO] Processing SRX5773144. (7/10)
2021-08-02 17:58:29 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-02 18:08:03 [INFO] Processing SRX5773150. (8/10)
2021-08-02 18:08:03 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-02 18:16:30 [INFO] Processing SRX5773148. (9/10)
2021-08-02 18:16:30 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-02 18:24:26 [INFO] Processing SRX5773153. (10/10)
2021-08-02 18:24:26 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-02 18:31:50 [INFO] Writing to disk...
2021-08-02 18:33:20 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX5773151. (1/10)
2021-08-12 14:31:18 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-12 14:31:43 [INFO] Processing SRX5773152. (2/10)
2021-08-12 14:31:43 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-12 14:32:18 [INFO] Processing SRX5773147. (3/10)
2021-08-12 14:32:18 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-12 14:32:31 [INFO] Processing SRX5773146. (4/10)
2021-08-12 14:32:31 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-12 14:32:37 [INFO] Processing SRX5773145. (5/10)
2021-08-12 14:32:37 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-12 14:32:48 [INFO] Processing SRX5773149. (6/10)
2021-08-12 14:32:48 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-12 14:32:57 [INFO] Processing SRX5773144. (7/10)
2021-08-12 14:32:57 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-12 14:33:18 [INFO] Processing SRX5773150. (8/10)
2021-08-12 14:33:18 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-12 14:33:59 [INFO] Processing SRX5773148. (9/10)
2021-08-12 14:33:59 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-12 14:34:12 [INFO] Processing SRX5773153. (10/10)
2021-08-12 14:34:12 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-12 14:34:50 [INFO] Writing to disk...
2021-08-12 14:35:03 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX5773151. (1/10)
2021-08-12 15:09:40 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-12 15:10:01 [INFO] Processing SRX5773152. (2/10)
2021-08-12 15:10:01 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-12 15:10:29 [INFO] Processing SRX5773147. (3/10)
2021-08-12 15:10:29 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-12 15:10:39 [INFO] Processing SRX5773146. (4/10)
2021-08-12 15:10:39 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-12 15:10:44 [INFO] Processing SRX5773145. (5/10)
2021-08-12 15:10:44 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-12 15:10:56 [INFO] Processing SRX5773149. (6/10)
2021-08-12 15:10:56 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-12 15:11:05 [INFO] Processing SRX5773144. (7/10)
2021-08-12 15:11:05 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-12 15:11:20 [INFO] Processing SRX5773150. (8/10)
2021-08-12 15:11:20 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-12 15:11:52 [INFO] Processing SRX5773148. (9/10)
2021-08-12 15:11:52 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-12 15:12:04 [INFO] Processing SRX5773153. (10/10)
2021-08-12 15:12:04 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-12 15:12:36 [INFO] Writing to disk...
2021-08-12 15:12:49 [INFO] Finished.
2021-08-12 15:44:39 [INFO] Starting.
2021-08-12 15:44:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-12 15:44:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-12 15:44:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:40 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:40 [INFO] Writing every 10 Runs.
2021-08-12 15:44:40 [INFO] Processing SRX5773151. (1/10)
2021-08-12 15:44:40 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-12 15:45:07 [INFO] Processing SRX5773152. (2/10)
2021-08-12 15:45:07 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-12 15:45:39 [INFO] Processing SRX5773147. (3/10)
2021-08-12 15:45:39 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-12 15:45:51 [INFO] Processing SRX5773146. (4/10)
2021-08-12 15:45:51 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-12 15:45:59 [INFO] Processing SRX5773145. (5/10)
2021-08-12 15:45:59 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-12 15:46:12 [INFO] Processing SRX5773149. (6/10)
2021-08-12 15:46:12 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-12 15:46:24 [INFO] Processing SRX5773144. (7/10)
2021-08-12 15:46:24 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-12 15:46:42 [INFO] Processing SRX5773150. (8/10)
2021-08-12 15:46:42 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-12 15:47:23 [INFO] Processing SRX5773148. (9/10)
2021-08-12 15:47:23 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-12 15:47:39 [INFO] Processing SRX5773153. (10/10)
2021-08-12 15:47:39 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-12 15:48:16 [INFO] Writing to disk...
2021-08-12 15:48:36 [INFO] Finished.
2021-08-12 16:31:34 [INFO] Starting.
2021-08-12 16:31:34 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-12 16:31:34 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-12 16:31:34 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:31:35 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:31:35 [INFO] Writing every 10 Runs.
2021-08-12 16:31:35 [INFO] Processing SRX5773151. (1/10)
2021-08-12 16:31:35 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-12 16:32:04 [INFO] Processing SRX5773152. (2/10)
2021-08-12 16:32:04 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-12 16:32:40 [INFO] Processing SRX5773147. (3/10)
2021-08-12 16:32:40 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-12 16:32:55 [INFO] Processing SRX5773146. (4/10)
2021-08-12 16:32:55 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-12 16:33:05 [INFO] Processing SRX5773145. (5/10)
2021-08-12 16:33:05 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-12 16:33:19 [INFO] Processing SRX5773149. (6/10)
2021-08-12 16:33:19 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-12 16:33:33 [INFO] Processing SRX5773144. (7/10)
2021-08-12 16:33:33 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-12 16:33:56 [INFO] Processing SRX5773150. (8/10)
2021-08-12 16:33:56 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-12 16:34:44 [INFO] Processing SRX5773148. (9/10)
2021-08-12 16:34:44 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-12 16:35:02 [INFO] Processing SRX5773153. (10/10)
2021-08-12 16:35:02 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-12 16:36:04 [INFO] Writing to disk...
2021-08-12 16:36:30 [INFO] Finished.
2021-08-20 17:52:29 [INFO] Starting.
2021-08-20 17:52:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-20 17:52:29 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-20 17:52:29 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:52:29 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:52:29 [INFO] Writing every 10 Runs.
2021-08-20 17:52:29 [INFO] Processing SRX5773151. (1/10)
2021-08-20 17:52:29 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-20 17:52:51 [INFO] Processing SRX5773152. (2/10)
2021-08-20 17:52:51 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-20 17:53:21 [INFO] Processing SRX5773147. (3/10)
2021-08-20 17:53:21 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-20 17:53:32 [INFO] Processing SRX5773146. (4/10)
2021-08-20 17:53:32 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-20 17:53:37 [INFO] Processing SRX5773145. (5/10)
2021-08-20 17:53:37 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-20 17:53:48 [INFO] Processing SRX5773149. (6/10)
2021-08-20 17:53:48 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-20 17:53:56 [INFO] Processing SRX5773144. (7/10)
2021-08-20 17:53:56 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-20 17:54:13 [INFO] Processing SRX5773150. (8/10)
2021-08-20 17:54:13 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-20 17:54:43 [INFO] Processing SRX5773148. (9/10)
2021-08-20 17:54:43 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-20 17:54:53 [INFO] Processing SRX5773153. (10/10)
2021-08-20 17:54:53 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-20 17:55:20 [INFO] Writing to disk...
2021-08-20 17:55:30 [INFO] Finished.
2021-08-23 11:28:00 [INFO] Starting.
2021-08-23 11:28:00 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-23 11:28:00 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-23 11:28:00 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:28:01 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:28:01 [INFO] Writing every 10 Runs.
2021-08-23 11:28:01 [INFO] Processing SRX5773151. (1/10)
2021-08-23 11:28:01 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-23 11:28:16 [INFO] Processing SRX5773152. (2/10)
2021-08-23 11:28:16 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-23 11:28:32 [INFO] Processing SRX5773147. (3/10)
2021-08-23 11:28:32 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-23 11:28:40 [INFO] Processing SRX5773146. (4/10)
2021-08-23 11:28:40 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-23 11:28:44 [INFO] Processing SRX5773145. (5/10)
2021-08-23 11:28:44 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-23 11:28:52 [INFO] Processing SRX5773149. (6/10)
2021-08-23 11:28:52 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-23 11:28:58 [INFO] Processing SRX5773144. (7/10)
2021-08-23 11:28:58 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-23 11:29:09 [INFO] Processing SRX5773150. (8/10)
2021-08-23 11:29:09 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-23 11:29:27 [INFO] Processing SRX5773148. (9/10)
2021-08-23 11:29:27 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-23 11:29:33 [INFO] Processing SRX5773153. (10/10)
2021-08-23 11:29:33 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-23 11:29:50 [INFO] Writing to disk...
2021-08-23 11:29:52 [INFO] Finished.
2021-08-23 13:15:16 [INFO] Starting.
2021-08-23 13:15:16 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/
2021-08-23 13:15:16 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP194362/aggregate.hdf5
2021-08-23 13:15:16 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:15:17 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:15:17 [INFO] Writing every 10 Runs.
2021-08-23 13:15:17 [INFO] Processing SRX5773151. (1/10)
2021-08-23 13:15:17 [INFO] Processing SRX5773151-SRR8994266. (1/10)
2021-08-23 13:15:22 [INFO] Processing SRX5773152. (2/10)
2021-08-23 13:15:22 [INFO] Processing SRX5773152-SRR8994267. (2/10)
2021-08-23 13:15:29 [INFO] Processing SRX5773147. (3/10)
2021-08-23 13:15:29 [INFO] Processing SRX5773147-SRR8994262. (3/10)
2021-08-23 13:15:34 [INFO] Processing SRX5773146. (4/10)
2021-08-23 13:15:34 [INFO] Processing SRX5773146-SRR8994261. (4/10)
2021-08-23 13:15:36 [INFO] Processing SRX5773145. (5/10)
2021-08-23 13:15:36 [INFO] Processing SRX5773145-SRR8994260. (5/10)
2021-08-23 13:15:41 [INFO] Processing SRX5773149. (6/10)
2021-08-23 13:15:41 [INFO] Processing SRX5773149-SRR8994264. (6/10)
2021-08-23 13:15:44 [INFO] Processing SRX5773144. (7/10)
2021-08-23 13:15:44 [INFO] Processing SRX5773144-SRR8994259. (7/10)
2021-08-23 13:15:51 [INFO] Processing SRX5773150. (8/10)
2021-08-23 13:15:51 [INFO] Processing SRX5773150-SRR8994265. (8/10)
2021-08-23 13:15:56 [INFO] Processing SRX5773148. (9/10)
2021-08-23 13:15:56 [INFO] Processing SRX5773148-SRR8994263. (9/10)
2021-08-23 13:16:01 [INFO] Processing SRX5773153. (10/10)
2021-08-23 13:16:01 [INFO] Processing SRX5773153-SRR8994268. (10/10)
2021-08-23 13:16:07 [INFO] Writing to disk...
2021-08-23 13:16:08 [INFO] Finished.