2021-06-10 03:26:40 [INFO] Starting.
2021-06-10 03:26:40 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-06-10 03:26:40 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-06-10 03:26:40 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 03:26:40 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 03:26:41 [INFO] Building aggregate.
2021-06-10 03:26:41 [INFO] Writing every 10 Runs.
2021-06-10 03:26:41 [INFO] Processing SRX6893664. (1/6)
2021-06-10 03:26:41 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-06-10 03:26:58 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-06-10 03:27:11 [INFO] Processing SRX6893666. (2/6)
2021-06-10 03:27:11 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-06-10 03:27:30 [INFO] Processing SRX6893663. (3/6)
2021-06-10 03:27:30 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-06-10 03:27:53 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-06-10 03:28:05 [INFO] Processing SRX6893662. (4/6)
2021-06-10 03:28:05 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-06-10 03:28:19 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-06-10 03:28:27 [INFO] Processing SRX6893665. (5/6)
2021-06-10 03:28:27 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-06-10 03:28:58 [INFO] Processing SRX6893667. (6/6)
2021-06-10 03:28:58 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-06-10 03:29:22 [INFO] Writing to disk...
2021-06-10 03:29:32 [INFO] Finished.
2021-08-02 17:08:55 [INFO] Starting.
2021-08-02 17:08:56 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-02 17:08:56 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-02 17:08:56 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-02 17:08:56 [INFO] Building aggregate for 1bp_raw network.
2021-08-02 17:08:56 [INFO] Writing every 10 Runs.
2021-08-02 17:08:56 [INFO] Processing SRX6893664. (1/6)
2021-08-02 17:08:56 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-04 22:05:26 [INFO] Starting.
2021-08-04 22:05:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-04 22:05:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-04 22:05:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-04 22:05:27 [INFO] Building aggregate for 1bp_raw network.
2021-08-04 22:05:27 [INFO] Writing every 10 Runs.
2021-08-04 22:05:27 [INFO] Processing SRX6893664. (1/6)
2021-08-04 22:05:27 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-04 22:09:30 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-04 22:17:53 [INFO] Processing SRX6893666. (2/6)
2021-08-04 22:17:53 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-04 22:26:21 [INFO] Processing SRX6893663. (3/6)
2021-08-04 22:26:21 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-04 22:34:53 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-04 22:43:27 [INFO] Processing SRX6893662. (4/6)
2021-08-04 22:43:27 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-04 22:52:01 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-04 23:00:16 [INFO] Processing SRX6893665. (5/6)
2021-08-04 23:00:16 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-04 23:08:31 [INFO] Processing SRX6893667. (6/6)
2021-08-04 23:08:31 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-04 23:16:31 [INFO] Writing to disk...
2021-08-04 23:18:03 [INFO] Finished.
2021-08-12 14:31:17 [INFO] Starting.
2021-08-12 14:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-12 14:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-12 14:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:18 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:18 [INFO] Writing every 10 Runs.
2021-08-12 14:31:18 [INFO] Processing SRX6893664. (1/6)
2021-08-12 14:31:18 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-12 14:31:39 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-12 14:31:53 [INFO] Processing SRX6893666. (2/6)
2021-08-12 14:31:53 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-12 14:32:14 [INFO] Processing SRX6893663. (3/6)
2021-08-12 14:32:14 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-12 14:32:32 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-12 14:32:46 [INFO] Processing SRX6893662. (4/6)
2021-08-12 14:32:46 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-12 14:33:00 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-12 14:33:12 [INFO] Processing SRX6893665. (5/6)
2021-08-12 14:33:12 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-12 14:33:32 [INFO] Processing SRX6893667. (6/6)
2021-08-12 14:33:32 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-12 14:33:55 [INFO] Writing to disk...
2021-08-12 14:34:04 [INFO] Finished.
2021-08-12 15:09:39 [INFO] Starting.
2021-08-12 15:09:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-12 15:09:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-12 15:09:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:09:40 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:09:40 [INFO] Writing every 10 Runs.
2021-08-12 15:09:40 [INFO] Processing SRX6893664. (1/6)
2021-08-12 15:09:40 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-12 15:09:57 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-12 15:10:11 [INFO] Processing SRX6893666. (2/6)
2021-08-12 15:10:11 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-12 15:10:26 [INFO] Processing SRX6893663. (3/6)
2021-08-12 15:10:26 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-12 15:10:40 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-12 15:10:52 [INFO] Processing SRX6893662. (4/6)
2021-08-12 15:10:52 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-12 15:11:04 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-12 15:11:16 [INFO] Processing SRX6893665. (5/6)
2021-08-12 15:11:16 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-12 15:11:36 [INFO] Processing SRX6893667. (6/6)
2021-08-12 15:11:36 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-12 15:11:57 [INFO] Writing to disk...
2021-08-12 15:12:06 [INFO] Finished.
2021-08-12 15:44:39 [INFO] Starting.
2021-08-12 15:44:39 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-12 15:44:39 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-12 15:44:39 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:44:39 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:44:39 [INFO] Writing every 10 Runs.
2021-08-12 15:44:39 [INFO] Processing SRX6893664. (1/6)
2021-08-12 15:44:39 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-12 15:45:02 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-12 15:45:18 [INFO] Processing SRX6893666. (2/6)
2021-08-12 15:45:18 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-12 15:45:36 [INFO] Processing SRX6893663. (3/6)
2021-08-12 15:45:36 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-12 15:45:54 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-12 15:46:08 [INFO] Processing SRX6893662. (4/6)
2021-08-12 15:46:08 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-12 15:46:22 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-12 15:46:36 [INFO] Processing SRX6893665. (5/6)
2021-08-12 15:46:36 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-12 15:46:58 [INFO] Processing SRX6893667. (6/6)
2021-08-12 15:46:58 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-12 15:47:25 [INFO] Writing to disk...
2021-08-12 15:47:38 [INFO] Finished.
2021-08-12 16:31:34 [INFO] Starting.
2021-08-12 16:31:34 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-12 16:31:34 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-12 16:31:34 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:31:35 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:31:35 [INFO] Writing every 10 Runs.
2021-08-12 16:31:35 [INFO] Processing SRX6893664. (1/6)
2021-08-12 16:31:35 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-12 16:32:00 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-12 16:32:19 [INFO] Processing SRX6893666. (2/6)
2021-08-12 16:32:19 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-12 16:32:43 [INFO] Processing SRX6893663. (3/6)
2021-08-12 16:32:43 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-12 16:33:04 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-12 16:33:21 [INFO] Processing SRX6893662. (4/6)
2021-08-12 16:33:21 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-12 16:33:42 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-12 16:33:59 [INFO] Processing SRX6893665. (5/6)
2021-08-12 16:33:59 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-12 16:34:30 [INFO] Processing SRX6893667. (6/6)
2021-08-12 16:34:30 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-12 16:35:02 [INFO] Writing to disk...
2021-08-12 16:35:22 [INFO] Finished.
2021-08-20 17:55:27 [INFO] Starting.
2021-08-20 17:55:27 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-20 17:55:27 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-20 17:55:27 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 17:55:29 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 17:55:29 [INFO] Writing every 10 Runs.
2021-08-20 17:55:29 [INFO] Processing SRX6893664. (1/6)
2021-08-20 17:55:29 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-20 17:55:40 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-20 17:55:50 [INFO] Processing SRX6893666. (2/6)
2021-08-20 17:55:50 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-20 17:56:04 [INFO] Processing SRX6893663. (3/6)
2021-08-20 17:56:04 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-20 17:56:14 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-20 17:56:23 [INFO] Processing SRX6893662. (4/6)
2021-08-20 17:56:23 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-20 17:56:34 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-20 17:56:43 [INFO] Processing SRX6893665. (5/6)
2021-08-20 17:56:43 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-20 17:56:58 [INFO] Processing SRX6893667. (6/6)
2021-08-20 17:56:58 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-20 17:57:17 [INFO] Writing to disk...
2021-08-20 17:57:22 [INFO] Finished.
2021-08-23 11:28:00 [INFO] Starting.
2021-08-23 11:28:00 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-23 11:28:00 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-23 11:28:00 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:28:01 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:28:01 [INFO] Writing every 10 Runs.
2021-08-23 11:28:01 [INFO] Processing SRX6893664. (1/6)
2021-08-23 11:28:01 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-23 11:28:08 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-23 11:28:13 [INFO] Processing SRX6893666. (2/6)
2021-08-23 11:28:13 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-23 11:28:23 [INFO] Processing SRX6893663. (3/6)
2021-08-23 11:28:23 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-23 11:28:28 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-23 11:28:34 [INFO] Processing SRX6893662. (4/6)
2021-08-23 11:28:34 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-23 11:28:40 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-23 11:28:45 [INFO] Processing SRX6893665. (5/6)
2021-08-23 11:28:45 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-23 11:28:56 [INFO] Processing SRX6893667. (6/6)
2021-08-23 11:28:56 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-23 11:29:09 [INFO] Writing to disk...
2021-08-23 11:29:10 [INFO] Finished.
2021-08-23 13:15:15 [INFO] Starting.
2021-08-23 13:15:15 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/
2021-08-23 13:15:15 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP223060/aggregate.hdf5
2021-08-23 13:15:15 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:15:16 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:15:16 [INFO] Writing every 10 Runs.
2021-08-23 13:15:16 [INFO] Processing SRX6893664. (1/6)
2021-08-23 13:15:16 [INFO] Processing SRX6893664-SRR10168902. (1/9)
2021-08-23 13:15:20 [INFO] Processing SRX6893664-SRR10168901. (2/9)
2021-08-23 13:15:24 [INFO] Processing SRX6893666. (2/6)
2021-08-23 13:15:24 [INFO] Processing SRX6893666-SRR10168904. (3/9)
2021-08-23 13:15:31 [INFO] Processing SRX6893663. (3/6)
2021-08-23 13:15:31 [INFO] Processing SRX6893663-SRR10168899. (4/9)
2021-08-23 13:15:35 [INFO] Processing SRX6893663-SRR10168900. (5/9)
2021-08-23 13:15:39 [INFO] Processing SRX6893662. (4/6)
2021-08-23 13:15:39 [INFO] Processing SRX6893662-SRR10168897. (6/9)
2021-08-23 13:15:42 [INFO] Processing SRX6893662-SRR10168898. (7/9)
2021-08-23 13:15:46 [INFO] Processing SRX6893665. (5/6)
2021-08-23 13:15:46 [INFO] Processing SRX6893665-SRR10168903. (8/9)
2021-08-23 13:15:53 [INFO] Processing SRX6893667. (6/6)
2021-08-23 13:15:53 [INFO] Processing SRX6893667-SRR10168905. (9/9)
2021-08-23 13:16:01 [INFO] Writing to disk...
2021-08-23 13:16:01 [INFO] Finished.