2021-06-10 04:20:48 [INFO] Starting.
2021-06-10 04:20:48 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-06-10 04:20:48 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-06-10 04:20:48 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes
2021-06-10 04:20:48 [INFO] Using only main chromosomes: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chrX, chr8, chr9, chr11, chr10, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr20, chr19, chrY, chr22, chr21, chrM
2021-06-10 04:20:49 [INFO] Building aggregate.
2021-06-10 04:20:49 [INFO] Writing every 10 Runs.
2021-06-10 04:20:49 [INFO] Processing SRX8330828. (1/2)
2021-06-10 04:20:49 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-06-10 04:21:06 [INFO] Processing SRX8330827. (2/2)
2021-06-10 04:21:06 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-06-10 04:21:18 [INFO] Writing to disk...
2021-06-10 04:21:31 [INFO] Finished.
2021-08-06 12:19:00 [INFO] SPECIAL NOTE: 1bp_raw aggregate build failed due to memory issues. It was manually copied in from a version that Ruchi calculated separately.
2021-08-12 14:34:07 [INFO] Starting.
2021-08-12 14:34:07 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-12 14:34:07 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-12 14:34:07 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:34:09 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:34:09 [INFO] Writing every 10 Runs.
2021-08-12 14:34:09 [INFO] Processing SRX8330828. (1/2)
2021-08-12 14:34:09 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-12 14:34:29 [INFO] Processing SRX8330827. (2/2)
2021-08-12 14:34:29 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-12 14:34:47 [INFO] Writing to disk...
2021-08-12 14:34:50 [INFO] Finished.
2021-08-12 15:12:26 [INFO] Starting.
2021-08-12 15:12:26 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-12 15:12:26 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-12 15:12:26 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:12:27 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 15:12:27 [INFO] Writing every 10 Runs.
2021-08-12 15:12:27 [INFO] Processing SRX8330828. (1/2)
2021-08-12 15:12:27 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-12 15:12:45 [INFO] Processing SRX8330827. (2/2)
2021-08-12 15:12:45 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-12 15:13:00 [INFO] Writing to disk...
2021-08-12 15:13:03 [INFO] Finished.
2021-08-12 15:47:40 [INFO] Starting.
2021-08-12 15:47:40 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-12 15:47:40 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-12 15:47:40 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 15:47:42 [INFO] Building aggregate for 5kbp_raw network.
2021-08-12 15:47:42 [INFO] Writing every 10 Runs.
2021-08-12 15:47:42 [INFO] Processing SRX8330828. (1/2)
2021-08-12 15:47:42 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-12 15:48:00 [INFO] Processing SRX8330827. (2/2)
2021-08-12 15:48:00 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-12 15:48:19 [INFO] Writing to disk...
2021-08-12 15:48:22 [INFO] Finished.
2021-08-12 16:36:07 [INFO] Starting.
2021-08-12 16:36:07 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-12 16:36:07 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-12 16:36:07 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:36:09 [INFO] Building aggregate for 1kbp_raw network.
2021-08-12 16:36:09 [INFO] Writing every 10 Runs.
2021-08-12 16:36:09 [INFO] Processing SRX8330828. (1/2)
2021-08-12 16:36:09 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-12 16:36:36 [INFO] Processing SRX8330827. (2/2)
2021-08-12 16:36:36 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-12 16:36:58 [INFO] Writing to disk...
2021-08-12 16:37:02 [INFO] Finished.
2021-08-20 18:04:30 [INFO] Starting.
2021-08-20 18:04:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-20 18:04:30 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-20 18:04:30 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-20 18:04:31 [INFO] Building aggregate for 100kbp_raw network.
2021-08-20 18:04:31 [INFO] Writing every 10 Runs.
2021-08-20 18:04:31 [INFO] Processing SRX8330828. (1/2)
2021-08-20 18:04:31 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-20 18:04:47 [INFO] Processing SRX8330827. (2/2)
2021-08-20 18:04:47 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-20 18:05:00 [INFO] Writing to disk...
2021-08-20 18:05:09 [INFO] Finished.
2021-08-23 11:31:17 [INFO] Starting.
2021-08-23 11:31:17 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-23 11:31:17 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-23 11:31:17 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 11:31:18 [INFO] Building aggregate for 250kbp_raw network.
2021-08-23 11:31:18 [INFO] Writing every 10 Runs.
2021-08-23 11:31:18 [INFO] Processing SRX8330828. (1/2)
2021-08-23 11:31:18 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-23 11:31:27 [INFO] Processing SRX8330827. (2/2)
2021-08-23 11:31:27 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-23 11:31:37 [INFO] Writing to disk...
2021-08-23 11:31:38 [INFO] Finished.
2021-08-23 13:17:24 [INFO] Starting.
2021-08-23 13:17:24 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/
2021-08-23 13:17:24 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_human/SRP261299/aggregate.hdf5
2021-08-23 13:17:24 [WARNING] chroms=/grid/gillis/data/nfox/genomes/homo_sapiens_38/hg38.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:17:25 [INFO] Building aggregate for 500kbp_raw network.
2021-08-23 13:17:25 [INFO] Writing every 10 Runs.
2021-08-23 13:17:25 [INFO] Processing SRX8330828. (1/2)
2021-08-23 13:17:25 [INFO] Processing SRX8330828-SRR11777960. (1/2)
2021-08-23 13:17:30 [INFO] Processing SRX8330827. (2/2)
2021-08-23 13:17:30 [INFO] Processing SRX8330827-SRR11777961. (2/2)
2021-08-23 13:17:37 [INFO] Writing to disk...
2021-08-23 13:17:37 [INFO] Finished.