2021-08-02 14:43:29 [INFO] Starting.
2021-08-02 14:43:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-02 14:43:29 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-02 14:43:29 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:29 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX2485042. (1/6)
2021-08-02 14:43:30 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-02 14:43:33 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-02 14:43:35 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-02 14:43:38 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-02 14:43:40 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-02 14:43:43 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-02 14:43:45 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-02 14:43:47 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-02 14:43:50 [INFO] Processing SRX2485040. (2/6)
2021-08-02 14:43:50 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-02 14:43:55 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-02 14:44:01 [INFO] Writing to disk...
2021-08-02 14:44:02 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-02 14:44:09 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-02 14:44:14 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-02 14:44:20 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-02 14:44:25 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-02 14:44:31 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-02 14:44:37 [INFO] Processing SRX2485043. (3/6)
2021-08-02 14:44:37 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-02 14:44:42 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-02 14:44:48 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-02 14:44:57 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-02 14:45:04 [INFO] Writing to disk...
2021-08-02 14:45:06 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-02 14:45:12 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-02 14:45:18 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-02 14:45:25 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-02 14:45:31 [INFO] Processing SRX2485045. (4/6)
2021-08-02 14:45:31 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-02 14:45:38 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-02 14:45:44 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-02 14:45:50 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-02 14:45:57 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-02 14:46:03 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-02 14:46:10 [INFO] Writing to disk...
2021-08-02 14:46:15 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-02 14:46:22 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-02 14:46:30 [INFO] Processing SRX2485044. (5/6)
2021-08-02 14:46:30 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-02 14:46:35 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-02 14:46:41 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-02 14:46:47 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-02 14:46:54 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-02 14:47:00 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-02 14:47:07 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-02 14:47:13 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-02 14:47:19 [INFO] Writing to disk...
2021-08-02 14:47:29 [INFO] Processing SRX2485041. (6/6)
2021-08-02 14:47:29 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-02 14:47:34 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-02 14:47:39 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-02 14:47:45 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-02 14:47:50 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-02 14:47:57 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-02 14:48:03 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-02 14:48:09 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-02 14:48:15 [INFO] Writing to disk...
2021-08-02 14:48:23 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:22 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:22 [INFO] Writing every 10 Runs.
2021-08-12 14:31:22 [INFO] Processing SRX2485042. (1/6)
2021-08-12 14:31:22 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-12 14:31:24 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-12 14:31:27 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-12 14:31:29 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-12 14:31:32 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-12 14:31:34 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-12 14:31:37 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-12 14:31:39 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-12 14:31:42 [INFO] Processing SRX2485040. (2/6)
2021-08-12 14:31:42 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-12 14:31:47 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-12 14:31:53 [INFO] Writing to disk...
2021-08-12 14:31:54 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-12 14:32:00 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-12 14:32:06 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-12 14:32:12 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-12 14:32:17 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-12 14:32:22 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-12 14:32:28 [INFO] Processing SRX2485043. (3/6)
2021-08-12 14:32:28 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-12 14:32:34 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-12 14:32:40 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-12 14:32:46 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-12 14:32:52 [INFO] Writing to disk...
2021-08-12 14:32:54 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-12 14:33:00 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-12 14:33:05 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-12 14:33:12 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-12 14:33:19 [INFO] Processing SRX2485045. (4/6)
2021-08-12 14:33:19 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-12 14:33:25 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-12 14:33:31 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-12 14:33:37 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-12 14:33:43 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-12 14:33:50 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-12 14:33:57 [INFO] Writing to disk...
2021-08-12 14:34:11 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-12 14:34:17 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-12 14:34:23 [INFO] Processing SRX2485044. (5/6)
2021-08-12 14:34:23 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-12 14:34:30 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-12 14:34:36 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-12 14:34:42 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-12 14:34:48 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-12 14:34:54 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-12 14:34:59 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-12 14:35:05 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-12 14:35:11 [INFO] Writing to disk...
2021-08-12 14:35:27 [INFO] Processing SRX2485041. (6/6)
2021-08-12 14:35:27 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-12 14:35:33 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-12 14:35:38 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-12 14:35:43 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-12 14:35:49 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-12 14:35:54 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-12 14:35:59 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-12 14:36:04 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-12 14:36:09 [INFO] Writing to disk...
2021-08-12 14:36:24 [INFO] Finished.
2021-08-12 16:34:30 [INFO] Starting.
2021-08-12 16:34:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-12 16:34:30 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-12 16:34:30 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:34:31 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:34:31 [INFO] Writing every 10 Runs.
2021-08-12 16:34:31 [INFO] Processing SRX2485042. (1/6)
2021-08-12 16:34:31 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-12 16:34:34 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-12 16:34:36 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-12 16:34:39 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-12 16:34:42 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-12 16:34:45 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-12 16:34:48 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-12 16:34:50 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-12 16:34:52 [INFO] Processing SRX2485040. (2/6)
2021-08-12 16:34:52 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-12 16:34:58 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-12 16:35:04 [INFO] Writing to disk...
2021-08-12 16:35:06 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-12 16:35:14 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-12 16:35:20 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-12 16:35:26 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-12 16:35:32 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-12 16:35:38 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-12 16:35:45 [INFO] Processing SRX2485043. (3/6)
2021-08-12 16:35:45 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-12 16:35:52 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-12 16:35:59 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-12 16:36:05 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-12 16:36:13 [INFO] Writing to disk...
2021-08-12 16:36:23 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-12 16:36:30 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-12 16:36:37 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-12 16:36:45 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-12 16:36:52 [INFO] Processing SRX2485045. (4/6)
2021-08-12 16:36:52 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-12 16:36:59 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-12 16:37:06 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-12 16:37:12 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-12 16:37:19 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-12 16:37:28 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-12 16:37:36 [INFO] Writing to disk...
2021-08-12 16:37:53 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-12 16:38:01 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-12 16:38:09 [INFO] Processing SRX2485044. (5/6)
2021-08-12 16:38:09 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-12 16:38:17 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-12 16:38:23 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-12 16:38:30 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-12 16:38:36 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-12 16:38:44 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-12 16:38:51 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-12 16:38:58 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-12 16:39:05 [INFO] Writing to disk...
2021-08-12 16:39:20 [INFO] Processing SRX2485041. (6/6)
2021-08-12 16:39:20 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-12 16:39:26 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-12 16:39:31 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-12 16:39:36 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-12 16:39:42 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-12 16:39:48 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-12 16:39:53 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-12 16:39:59 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-12 16:40:04 [INFO] Writing to disk...
2021-08-12 16:40:22 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:54 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:54 [INFO] Writing every 10 Runs.
2021-08-13 09:44:54 [INFO] Processing SRX2485042. (1/6)
2021-08-13 09:44:54 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-13 09:44:57 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-13 09:44:59 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-13 09:45:01 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-13 09:45:03 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-13 09:45:06 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-13 09:45:07 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-13 09:45:10 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-13 09:45:12 [INFO] Processing SRX2485040. (2/6)
2021-08-13 09:45:12 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-13 09:45:17 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-13 09:45:23 [INFO] Writing to disk...
2021-08-13 09:45:25 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-13 09:45:30 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-13 09:45:35 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-13 09:45:39 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-13 09:45:44 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-13 09:45:49 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-13 09:45:54 [INFO] Processing SRX2485043. (3/6)
2021-08-13 09:45:54 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-13 09:45:59 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-13 09:46:06 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-13 09:46:11 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-13 09:46:16 [INFO] Writing to disk...
2021-08-13 09:46:19 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-13 09:46:25 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-13 09:46:31 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-13 09:46:37 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-13 09:46:43 [INFO] Processing SRX2485045. (4/6)
2021-08-13 09:46:43 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-13 09:46:49 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-13 09:46:56 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-13 09:47:02 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-13 09:47:08 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-13 09:47:14 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-13 09:47:21 [INFO] Writing to disk...
2021-08-13 09:47:33 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-13 09:47:39 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-13 09:47:45 [INFO] Processing SRX2485044. (5/6)
2021-08-13 09:47:45 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-13 09:47:50 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-13 09:47:56 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-13 09:48:01 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-13 09:48:06 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-13 09:48:12 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-13 09:48:18 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-13 09:48:24 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-13 09:48:30 [INFO] Writing to disk...
2021-08-13 09:48:44 [INFO] Processing SRX2485041. (6/6)
2021-08-13 09:48:44 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-13 09:48:51 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-13 09:48:56 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-13 09:49:02 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-13 09:49:08 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-13 09:49:15 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-13 09:49:21 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-13 09:49:27 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-13 09:49:33 [INFO] Writing to disk...
2021-08-13 09:49:41 [INFO] Finished.
2021-08-13 17:23:01 [INFO] Starting.
2021-08-13 17:23:01 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-13 17:23:01 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-13 17:23:01 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:23:02 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:23:02 [INFO] Writing every 10 Runs.
2021-08-13 17:23:02 [INFO] Processing SRX2485042. (1/6)
2021-08-13 17:23:02 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-13 17:23:05 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-13 17:23:10 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-13 17:23:14 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-13 17:23:18 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-13 17:23:21 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-13 17:23:25 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-13 17:23:28 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-13 17:23:32 [INFO] Processing SRX2485040. (2/6)
2021-08-13 17:23:32 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-13 17:23:41 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-13 17:23:49 [INFO] Writing to disk...
2021-08-13 17:23:52 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-13 17:24:00 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-13 17:24:09 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-13 17:24:16 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-13 17:24:25 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-13 17:24:32 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-13 17:24:42 [INFO] Processing SRX2485043. (3/6)
2021-08-13 17:24:42 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-13 17:24:50 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-13 17:24:59 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-13 17:25:09 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-13 17:25:20 [INFO] Writing to disk...
2021-08-13 17:25:30 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-13 17:25:39 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-13 17:25:50 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-13 17:26:00 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-13 17:26:09 [INFO] Processing SRX2485045. (4/6)
2021-08-13 17:26:09 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-13 17:26:19 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-13 17:26:31 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-13 17:26:42 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-13 17:26:52 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-13 17:27:02 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-13 17:27:12 [INFO] Writing to disk...
2021-08-13 17:27:26 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-13 17:27:36 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-13 17:27:47 [INFO] Processing SRX2485044. (5/6)
2021-08-13 17:27:47 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-13 17:27:57 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-13 17:28:07 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-13 17:28:16 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-13 17:28:26 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-13 17:28:35 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-13 17:28:45 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-13 17:28:56 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-13 17:29:07 [INFO] Writing to disk...
2021-08-13 17:29:26 [INFO] Processing SRX2485041. (6/6)
2021-08-13 17:29:26 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-13 17:29:35 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-13 17:29:45 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-13 17:29:54 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-13 17:30:03 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-13 17:30:12 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-13 17:30:20 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-13 17:30:31 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-13 17:30:42 [INFO] Writing to disk...
2021-08-13 17:31:03 [INFO] Finished.
2021-08-16 11:36:46 [INFO] Starting.
2021-08-16 11:36:46 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-16 11:36:46 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-16 11:36:46 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:46 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:46 [INFO] Writing every 10 Runs.
2021-08-16 11:36:46 [INFO] Processing SRX2485042. (1/6)
2021-08-16 11:36:46 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-16 11:44:49 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-16 11:54:21 [ERROR] Adding SRR5168139:chr17_vs_chr19 to in memory aggregate failed. Error message:
Traceback (most recent call last):
  File "/grid/gillis/data/nfox/hi_c_data_processing/software/aggregate.py", line 445, in add_dataset
    aggregate_data[c] = aggregate_data[c] + net
  File "/grid/gillis/home/nfox/software/miniconda3/lib/python3.8/site-packages/scipy/sparse/base.py", line 415, in __add__
    return self._add_sparse(other)
  File "/grid/gillis/home/nfox/software/miniconda3/lib/python3.8/site-packages/scipy/sparse/compressed.py", line 359, in _add_sparse
    return self._binopt(other, '_plus_')
  File "/grid/gillis/home/nfox/software/miniconda3/lib/python3.8/site-packages/scipy/sparse/compressed.py", line 1226, in _binopt
    indptr = np.empty(self.indptr.shape, dtype=idx_dtype)
MemoryError: Unable to allocate 362. MiB for an array with shape (94987272,) and data type int32

2021-08-16 23:27:22 [INFO] Starting.
2021-08-16 23:27:22 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-16 23:27:22 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-16 23:27:22 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 23:27:23 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 23:27:23 [INFO] Writing every 10 Runs.
2021-08-16 23:27:23 [INFO] Processing SRX2485042. (1/6)
2021-08-16 23:27:23 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-16 23:30:19 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-16 23:36:28 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-16 23:42:58 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-16 23:49:20 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-16 23:55:45 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-17 00:02:23 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-17 00:08:51 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-17 00:15:20 [INFO] Processing SRX2485040. (2/6)
2021-08-17 00:15:20 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-17 00:21:53 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-17 00:28:21 [INFO] Writing to disk...
2021-08-17 00:28:57 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-17 00:35:30 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-17 00:41:13 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-17 00:46:52 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-17 00:52:18 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-17 00:57:36 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-17 01:02:57 [INFO] Processing SRX2485043. (3/6)
2021-08-17 01:02:57 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-17 01:08:15 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-17 01:13:36 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-17 01:18:57 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-17 01:24:18 [INFO] Writing to disk...
2021-08-17 01:24:54 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-17 01:30:14 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-17 01:35:36 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-17 01:40:56 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-17 01:46:16 [INFO] Processing SRX2485045. (4/6)
2021-08-17 01:46:16 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-17 01:51:35 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-17 01:56:53 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-17 02:02:13 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-17 02:07:34 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-17 02:12:53 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-17 02:18:14 [INFO] Writing to disk...
2021-08-17 02:18:55 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-17 02:24:17 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-17 02:29:38 [INFO] Processing SRX2485044. (5/6)
2021-08-17 02:29:38 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-17 02:34:55 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-17 02:40:16 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-17 02:45:35 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-17 02:50:57 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-17 02:56:19 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-17 03:01:40 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-17 03:06:59 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-17 03:12:19 [INFO] Writing to disk...
2021-08-17 03:13:04 [INFO] Processing SRX2485041. (6/6)
2021-08-17 03:13:04 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-17 03:18:15 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-17 03:23:26 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-17 03:28:38 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-17 03:33:46 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-17 03:39:05 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-17 03:44:11 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-17 03:49:22 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-17 03:54:38 [INFO] Writing to disk...
2021-08-17 03:55:25 [INFO] Finished.
2021-08-23 13:34:04 [INFO] Starting.
2021-08-23 13:34:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-23 13:34:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-23 13:34:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:05 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:05 [INFO] Writing every 10 Runs.
2021-08-23 13:34:05 [INFO] Processing SRX2485042. (1/6)
2021-08-23 13:34:05 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-23 13:34:06 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-23 13:34:08 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-23 13:34:09 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-23 13:34:11 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-23 13:34:13 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-23 13:34:14 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-23 13:34:16 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-23 13:34:18 [INFO] Processing SRX2485040. (2/6)
2021-08-23 13:34:18 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-23 13:34:21 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-23 13:34:25 [INFO] Writing to disk...
2021-08-23 13:34:26 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-23 13:34:29 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-23 13:34:32 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-23 13:34:36 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-23 13:34:39 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-23 13:34:43 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-23 13:34:46 [INFO] Processing SRX2485043. (3/6)
2021-08-23 13:34:46 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-23 13:34:50 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-23 13:34:54 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-23 13:34:57 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-23 13:35:01 [INFO] Writing to disk...
2021-08-23 13:35:06 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-23 13:35:11 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-23 13:35:15 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-23 13:35:20 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-23 13:35:24 [INFO] Processing SRX2485045. (4/6)
2021-08-23 13:35:24 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-23 13:35:27 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-23 13:35:31 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-23 13:35:36 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-23 13:35:41 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-23 13:35:45 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-23 13:35:50 [INFO] Writing to disk...
2021-08-23 13:35:58 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-23 13:36:02 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-23 13:36:06 [INFO] Processing SRX2485044. (5/6)
2021-08-23 13:36:06 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-23 13:36:10 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-23 13:36:13 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-23 13:36:17 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-23 13:36:21 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-23 13:36:26 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-23 13:36:30 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-23 13:36:34 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-23 13:36:39 [INFO] Writing to disk...
2021-08-23 13:36:49 [INFO] Processing SRX2485041. (6/6)
2021-08-23 13:36:49 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-23 13:36:53 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-23 13:36:57 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-23 13:37:00 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-23 13:37:03 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-23 13:37:07 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-23 13:37:10 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-23 13:37:13 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-23 13:37:17 [INFO] Writing to disk...
2021-08-23 13:37:25 [INFO] Finished.
2021-08-30 12:45:58 [INFO] Starting.
2021-08-30 12:45:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-30 12:45:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-30 12:45:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:58 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:58 [INFO] Writing every 10 Runs.
2021-08-30 12:45:58 [INFO] Processing SRX2485042. (1/6)
2021-08-30 12:45:58 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-30 12:46:00 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-30 12:46:02 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-30 12:46:04 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-30 12:46:05 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-30 12:46:07 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-30 12:46:08 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-30 12:46:10 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-30 12:46:12 [INFO] Processing SRX2485040. (2/6)
2021-08-30 12:46:12 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-30 12:46:16 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-30 12:46:18 [INFO] Writing to disk...
2021-08-30 12:46:19 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-30 12:46:23 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-30 12:46:26 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-30 12:46:28 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-30 12:46:32 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-30 12:46:35 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-30 12:46:38 [INFO] Processing SRX2485043. (3/6)
2021-08-30 12:46:38 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-30 12:46:41 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-30 12:46:44 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-30 12:46:48 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-30 12:46:51 [INFO] Writing to disk...
2021-08-30 12:46:52 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-30 12:46:55 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-30 12:46:58 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-30 12:47:01 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-30 12:47:04 [INFO] Processing SRX2485045. (4/6)
2021-08-30 12:47:04 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-30 12:47:08 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-30 12:47:11 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-30 12:47:15 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-30 12:47:19 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-30 12:47:23 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-30 12:47:27 [INFO] Writing to disk...
2021-08-30 12:47:29 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-30 12:47:32 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-30 12:47:36 [INFO] Processing SRX2485044. (5/6)
2021-08-30 12:47:36 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-30 12:47:40 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-30 12:47:42 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-30 12:47:45 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-30 12:47:49 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-30 12:47:53 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-30 12:47:56 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-30 12:48:01 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-30 12:48:04 [INFO] Writing to disk...
2021-08-30 12:48:09 [INFO] Processing SRX2485041. (6/6)
2021-08-30 12:48:09 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-30 12:48:13 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-30 12:48:15 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-30 12:48:18 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-30 12:48:21 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-30 12:48:24 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-30 12:48:27 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-30 12:48:31 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-30 12:48:34 [INFO] Writing to disk...
2021-08-30 12:48:35 [INFO] Finished.
2021-08-30 21:26:36 [INFO] Starting.
2021-08-30 21:26:36 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/
2021-08-30 21:26:36 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP096571/aggregate.hdf5
2021-08-30 21:26:36 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:26:37 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:26:37 [INFO] Writing every 10 Runs.
2021-08-30 21:26:37 [INFO] Processing SRX2485042. (1/6)
2021-08-30 21:26:37 [INFO] Processing SRX2485042-SRR5168141. (1/48)
2021-08-30 21:26:39 [INFO] Processing SRX2485042-SRR5168139. (2/48)
2021-08-30 21:26:41 [INFO] Processing SRX2485042-SRR5168134. (3/48)
2021-08-30 21:26:42 [INFO] Processing SRX2485042-SRR5168138. (4/48)
2021-08-30 21:26:44 [INFO] Processing SRX2485042-SRR5168137. (5/48)
2021-08-30 21:26:45 [INFO] Processing SRX2485042-SRR5168135. (6/48)
2021-08-30 21:26:47 [INFO] Processing SRX2485042-SRR5168140. (7/48)
2021-08-30 21:26:49 [INFO] Processing SRX2485042-SRR5168136. (8/48)
2021-08-30 21:26:51 [INFO] Processing SRX2485040. (2/6)
2021-08-30 21:26:51 [INFO] Processing SRX2485040-SRR5168125. (9/48)
2021-08-30 21:26:53 [INFO] Processing SRX2485040-SRR5168124. (10/48)
2021-08-30 21:26:55 [INFO] Writing to disk...
2021-08-30 21:26:56 [INFO] Processing SRX2485040-SRR5168119. (11/48)
2021-08-30 21:26:59 [INFO] Processing SRX2485040-SRR5168120. (12/48)
2021-08-30 21:27:01 [INFO] Processing SRX2485040-SRR5168123. (13/48)
2021-08-30 21:27:04 [INFO] Processing SRX2485040-SRR5168122. (14/48)
2021-08-30 21:27:07 [INFO] Processing SRX2485040-SRR5168121. (15/48)
2021-08-30 21:27:10 [INFO] Processing SRX2485040-SRR5168118. (16/48)
2021-08-30 21:27:13 [INFO] Processing SRX2485043. (3/6)
2021-08-30 21:27:13 [INFO] Processing SRX2485043-SRR5168149. (17/48)
2021-08-30 21:27:16 [INFO] Processing SRX2485043-SRR5168144. (18/48)
2021-08-30 21:27:19 [INFO] Processing SRX2485043-SRR5168148. (19/48)
2021-08-30 21:27:22 [INFO] Processing SRX2485043-SRR5168147. (20/48)
2021-08-30 21:27:25 [INFO] Writing to disk...
2021-08-30 21:27:28 [INFO] Processing SRX2485043-SRR5168145. (21/48)
2021-08-30 21:27:31 [INFO] Processing SRX2485043-SRR5168146. (22/48)
2021-08-30 21:27:34 [INFO] Processing SRX2485043-SRR5168142. (23/48)
2021-08-30 21:27:37 [INFO] Processing SRX2485043-SRR5168143. (24/48)
2021-08-30 21:27:40 [INFO] Processing SRX2485045. (4/6)
2021-08-30 21:27:40 [INFO] Processing SRX2485045-SRR5168160. (25/48)
2021-08-30 21:27:43 [INFO] Processing SRX2485045-SRR5168162. (26/48)
2021-08-30 21:27:46 [INFO] Processing SRX2485045-SRR5168159. (27/48)
2021-08-30 21:27:48 [INFO] Processing SRX2485045-SRR5168163. (28/48)
2021-08-30 21:27:51 [INFO] Processing SRX2485045-SRR5168161. (29/48)
2021-08-30 21:27:55 [INFO] Processing SRX2485045-SRR5168158. (30/48)
2021-08-30 21:27:57 [INFO] Writing to disk...
2021-08-30 21:28:04 [INFO] Processing SRX2485045-SRR5168165. (31/48)
2021-08-30 21:28:07 [INFO] Processing SRX2485045-SRR5168164. (32/48)
2021-08-30 21:28:11 [INFO] Processing SRX2485044. (5/6)
2021-08-30 21:28:11 [INFO] Processing SRX2485044-SRR5168152. (33/48)
2021-08-30 21:28:15 [INFO] Processing SRX2485044-SRR5168156. (34/48)
2021-08-30 21:28:18 [INFO] Processing SRX2485044-SRR5168157. (35/48)
2021-08-30 21:28:21 [INFO] Processing SRX2485044-SRR5168155. (36/48)
2021-08-30 21:28:24 [INFO] Processing SRX2485044-SRR5168154. (37/48)
2021-08-30 21:28:27 [INFO] Processing SRX2485044-SRR5168153. (38/48)
2021-08-30 21:28:30 [INFO] Processing SRX2485044-SRR5168151. (39/48)
2021-08-30 21:28:33 [INFO] Processing SRX2485044-SRR5168150. (40/48)
2021-08-30 21:28:36 [INFO] Writing to disk...
2021-08-30 21:28:41 [INFO] Processing SRX2485041. (6/6)
2021-08-30 21:28:41 [INFO] Processing SRX2485041-SRR5168131. (41/48)
2021-08-30 21:28:44 [INFO] Processing SRX2485041-SRR5168128. (42/48)
2021-08-30 21:28:47 [INFO] Processing SRX2485041-SRR5168133. (43/48)
2021-08-30 21:28:49 [INFO] Processing SRX2485041-SRR5168129. (44/48)
2021-08-30 21:28:52 [INFO] Processing SRX2485041-SRR5168127. (45/48)
2021-08-30 21:28:55 [INFO] Processing SRX2485041-SRR5168130. (46/48)
2021-08-30 21:28:57 [INFO] Processing SRX2485041-SRR5168126. (47/48)
2021-08-30 21:29:00 [INFO] Processing SRX2485041-SRR5168132. (48/48)
2021-08-30 21:29:03 [INFO] Writing to disk...
2021-08-30 21:29:05 [INFO] Finished.