2021-08-02 14:43:29 [INFO] Starting.
2021-08-02 14:43:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-02 14:43:29 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-02 14:43:29 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:29 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX2599839. (1/12)
2021-08-02 14:43:30 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-02 14:43:42 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-02 14:43:57 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-02 14:44:09 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-02 14:44:16 [INFO] Processing SRX2599834. (2/12)
2021-08-02 14:44:16 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-02 14:44:26 [INFO] Processing SRX2599836. (3/12)
2021-08-02 14:44:26 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-02 14:44:39 [INFO] Processing SRX2599831. (4/12)
2021-08-02 14:44:39 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-02 14:44:56 [INFO] Processing SRX2599833. (5/12)
2021-08-02 14:44:56 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-02 14:45:11 [INFO] Processing SRX2599842. (6/12)
2021-08-02 14:45:11 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-02 14:45:22 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-02 14:45:36 [INFO] Writing to disk...
2021-08-02 14:45:43 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-02 14:45:55 [INFO] Processing SRX2599837. (7/12)
2021-08-02 14:45:55 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-02 14:46:08 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-02 14:46:27 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-02 14:46:42 [INFO] Processing SRX2599838. (8/12)
2021-08-02 14:46:42 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-02 14:46:57 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-02 14:47:14 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-02 14:47:25 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-02 14:47:42 [INFO] Processing SRX2599835. (9/12)
2021-08-02 14:47:42 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-02 14:47:58 [INFO] Processing SRX2599840. (10/12)
2021-08-02 14:47:58 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-02 14:48:09 [INFO] Writing to disk...
2021-08-02 14:48:27 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-02 14:48:37 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-02 14:48:49 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-02 14:49:02 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-02 14:49:10 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-02 14:49:20 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-02 14:49:33 [INFO] Processing SRX2599832. (11/12)
2021-08-02 14:49:33 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-02 14:49:48 [INFO] Processing SRX2599841. (12/12)
2021-08-02 14:49:48 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-02 14:50:03 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-02 14:50:22 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-02 14:50:37 [INFO] Writing to disk...
2021-08-02 14:50:58 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:21 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:21 [INFO] Writing every 10 Runs.
2021-08-12 14:31:21 [INFO] Processing SRX2599839. (1/12)
2021-08-12 14:31:21 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-12 14:31:32 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-12 14:31:46 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-12 14:32:02 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-12 14:32:10 [INFO] Processing SRX2599834. (2/12)
2021-08-12 14:32:10 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-12 14:32:20 [INFO] Processing SRX2599836. (3/12)
2021-08-12 14:32:20 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-12 14:32:35 [INFO] Processing SRX2599831. (4/12)
2021-08-12 14:32:35 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-12 14:32:50 [INFO] Processing SRX2599833. (5/12)
2021-08-12 14:32:50 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-12 14:33:04 [INFO] Processing SRX2599842. (6/12)
2021-08-12 14:33:04 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-12 14:33:16 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-12 14:33:31 [INFO] Writing to disk...
2021-08-12 14:33:37 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-12 14:33:51 [INFO] Processing SRX2599837. (7/12)
2021-08-12 14:33:51 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-12 14:34:04 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-12 14:34:23 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-12 14:34:39 [INFO] Processing SRX2599838. (8/12)
2021-08-12 14:34:39 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-12 14:34:53 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-12 14:35:07 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-12 14:35:18 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-12 14:35:34 [INFO] Processing SRX2599835. (9/12)
2021-08-12 14:35:34 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-12 14:35:53 [INFO] Processing SRX2599840. (10/12)
2021-08-12 14:35:53 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-12 14:36:05 [INFO] Writing to disk...
2021-08-12 14:36:22 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-12 14:36:33 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-12 14:36:44 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-12 14:36:54 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-12 14:37:00 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-12 14:37:10 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-12 14:37:19 [INFO] Processing SRX2599832. (11/12)
2021-08-12 14:37:19 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-12 14:37:35 [INFO] Processing SRX2599841. (12/12)
2021-08-12 14:37:35 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-12 14:37:46 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-12 14:38:01 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-12 14:38:17 [INFO] Writing to disk...
2021-08-12 14:38:35 [INFO] Finished.
2021-08-12 16:36:24 [INFO] Starting.
2021-08-12 16:36:24 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-12 16:36:24 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-12 16:36:24 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:36:25 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:36:25 [INFO] Writing every 10 Runs.
2021-08-12 16:36:25 [INFO] Processing SRX2599839. (1/12)
2021-08-12 16:36:25 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-12 16:36:39 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-12 16:36:57 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-12 16:37:15 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-12 16:37:25 [INFO] Processing SRX2599834. (2/12)
2021-08-12 16:37:25 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-12 16:37:39 [INFO] Processing SRX2599836. (3/12)
2021-08-12 16:37:39 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-12 16:37:56 [INFO] Processing SRX2599831. (4/12)
2021-08-12 16:37:56 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-12 16:38:16 [INFO] Processing SRX2599833. (5/12)
2021-08-12 16:38:16 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-12 16:38:34 [INFO] Processing SRX2599842. (6/12)
2021-08-12 16:38:34 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-12 16:38:48 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-12 16:39:06 [INFO] Writing to disk...
2021-08-12 16:39:13 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-12 16:39:28 [INFO] Processing SRX2599837. (7/12)
2021-08-12 16:39:28 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-12 16:39:41 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-12 16:40:05 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-12 16:40:23 [INFO] Processing SRX2599838. (8/12)
2021-08-12 16:40:23 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-12 16:40:42 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-12 16:41:01 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-12 16:41:14 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-12 16:41:33 [INFO] Processing SRX2599835. (9/12)
2021-08-12 16:41:33 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-12 16:41:52 [INFO] Processing SRX2599840. (10/12)
2021-08-12 16:41:52 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-12 16:42:05 [INFO] Writing to disk...
2021-08-12 16:42:20 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-12 16:42:32 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-12 16:42:45 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-12 16:42:58 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-12 16:43:06 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-12 16:43:19 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-12 16:43:31 [INFO] Processing SRX2599832. (11/12)
2021-08-12 16:43:31 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-12 16:43:49 [INFO] Processing SRX2599841. (12/12)
2021-08-12 16:43:49 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-12 16:44:01 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-12 16:44:19 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-12 16:44:36 [INFO] Writing to disk...
2021-08-12 16:44:55 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:54 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:54 [INFO] Writing every 10 Runs.
2021-08-13 09:44:54 [INFO] Processing SRX2599839. (1/12)
2021-08-13 09:44:54 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-13 09:45:05 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-13 09:45:16 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-13 09:45:29 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-13 09:45:36 [INFO] Processing SRX2599834. (2/12)
2021-08-13 09:45:36 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-13 09:45:45 [INFO] Processing SRX2599836. (3/12)
2021-08-13 09:45:45 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-13 09:45:55 [INFO] Processing SRX2599831. (4/12)
2021-08-13 09:45:55 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-13 09:46:09 [INFO] Processing SRX2599833. (5/12)
2021-08-13 09:46:09 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-13 09:46:21 [INFO] Processing SRX2599842. (6/12)
2021-08-13 09:46:21 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-13 09:46:31 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-13 09:46:44 [INFO] Writing to disk...
2021-08-13 09:46:51 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-13 09:47:04 [INFO] Processing SRX2599837. (7/12)
2021-08-13 09:47:04 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-13 09:47:15 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-13 09:47:33 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-13 09:47:48 [INFO] Processing SRX2599838. (8/12)
2021-08-13 09:47:48 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-13 09:48:00 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-13 09:48:14 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-13 09:48:24 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-13 09:48:40 [INFO] Processing SRX2599835. (9/12)
2021-08-13 09:48:40 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-13 09:48:57 [INFO] Processing SRX2599840. (10/12)
2021-08-13 09:48:57 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-13 09:49:08 [INFO] Writing to disk...
2021-08-13 09:49:25 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-13 09:49:38 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-13 09:49:49 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-13 09:50:01 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-13 09:50:09 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-13 09:50:20 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-13 09:50:30 [INFO] Processing SRX2599832. (11/12)
2021-08-13 09:50:30 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-13 09:50:45 [INFO] Processing SRX2599841. (12/12)
2021-08-13 09:50:45 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-13 09:50:59 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-13 09:51:15 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-13 09:51:31 [INFO] Writing to disk...
2021-08-13 09:51:53 [INFO] Finished.
2021-08-13 17:23:01 [INFO] Starting.
2021-08-13 17:23:01 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-13 17:23:01 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-13 17:23:01 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:23:02 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:23:02 [INFO] Writing every 10 Runs.
2021-08-13 17:23:02 [INFO] Processing SRX2599839. (1/12)
2021-08-13 17:23:02 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-13 17:23:18 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-13 17:23:39 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-13 17:23:59 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-13 17:24:13 [INFO] Processing SRX2599834. (2/12)
2021-08-13 17:24:13 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-13 17:24:31 [INFO] Processing SRX2599836. (3/12)
2021-08-13 17:24:31 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-13 17:24:53 [INFO] Processing SRX2599831. (4/12)
2021-08-13 17:24:53 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-13 17:25:19 [INFO] Processing SRX2599833. (5/12)
2021-08-13 17:25:19 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-13 17:25:45 [INFO] Processing SRX2599842. (6/12)
2021-08-13 17:25:45 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-13 17:26:05 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-13 17:26:28 [INFO] Writing to disk...
2021-08-13 17:26:40 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-13 17:27:02 [INFO] Processing SRX2599837. (7/12)
2021-08-13 17:27:02 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-13 17:27:24 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-13 17:27:59 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-13 17:28:26 [INFO] Processing SRX2599838. (8/12)
2021-08-13 17:28:26 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-13 17:28:57 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-13 17:29:25 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-13 17:29:44 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-13 17:30:13 [INFO] Processing SRX2599835. (9/12)
2021-08-13 17:30:13 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-13 17:30:45 [INFO] Processing SRX2599840. (10/12)
2021-08-13 17:30:45 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-13 17:31:05 [INFO] Writing to disk...
2021-08-13 17:31:31 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-13 17:31:49 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-13 17:32:10 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-13 17:32:31 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-13 17:32:48 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-13 17:33:08 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-13 17:33:28 [INFO] Processing SRX2599832. (11/12)
2021-08-13 17:33:28 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-13 17:34:01 [INFO] Processing SRX2599841. (12/12)
2021-08-13 17:34:01 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-13 17:34:23 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-13 17:34:54 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-13 17:35:24 [INFO] Writing to disk...
2021-08-13 17:35:55 [INFO] Finished.
2021-08-16 11:36:46 [INFO] Starting.
2021-08-16 11:36:46 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-16 11:36:46 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-16 11:36:46 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:46 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:46 [INFO] Writing every 10 Runs.
2021-08-16 11:36:46 [INFO] Processing SRX2599839. (1/12)
2021-08-16 11:36:46 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-16 11:44:58 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-16 11:52:42 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-16 11:59:21 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-16 12:05:51 [INFO] Processing SRX2599834. (2/12)
2021-08-16 12:05:51 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-16 12:12:01 [INFO] Processing SRX2599836. (3/12)
2021-08-16 12:12:01 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-16 12:18:06 [INFO] Processing SRX2599831. (4/12)
2021-08-16 12:18:06 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-16 12:24:41 [INFO] Processing SRX2599833. (5/12)
2021-08-16 12:24:41 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-16 12:31:19 [INFO] Processing SRX2599842. (6/12)
2021-08-16 12:31:19 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-16 12:37:41 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-16 12:44:23 [INFO] Writing to disk...
2021-08-16 12:45:24 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-16 12:51:39 [INFO] Processing SRX2599837. (7/12)
2021-08-16 12:51:39 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-16 12:58:05 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-16 13:04:40 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-16 13:11:05 [INFO] Processing SRX2599838. (8/12)
2021-08-16 13:11:05 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-16 13:17:17 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-16 13:23:48 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-16 13:29:55 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-16 13:36:14 [INFO] Processing SRX2599835. (9/12)
2021-08-16 13:36:14 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-16 13:42:47 [INFO] Processing SRX2599840. (10/12)
2021-08-16 13:42:47 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-16 13:49:12 [INFO] Writing to disk...
2021-08-16 13:50:40 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-16 13:56:40 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-16 14:02:49 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-16 14:09:35 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-16 14:15:51 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-16 14:22:15 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-16 14:29:04 [INFO] Processing SRX2599832. (11/12)
2021-08-16 14:29:04 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-16 14:35:43 [INFO] Processing SRX2599841. (12/12)
2021-08-16 14:35:43 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-16 14:42:04 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-16 14:48:43 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-16 14:55:22 [INFO] Writing to disk...
2021-08-16 14:57:00 [INFO] Finished.
2021-08-17 00:19:11 [INFO] Starting.
2021-08-17 00:19:11 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-17 00:19:11 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-17 00:19:11 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-17 00:19:12 [INFO] Building aggregate for 1bp_raw network.
2021-08-17 00:19:12 [INFO] Writing every 10 Runs.
2021-08-17 00:19:12 [INFO] Processing SRX2599839. (1/12)
2021-08-17 00:19:12 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-17 00:23:03 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-17 00:30:10 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-17 00:37:14 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-17 00:44:23 [INFO] Processing SRX2599834. (2/12)
2021-08-17 00:44:23 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-17 00:51:48 [INFO] Processing SRX2599836. (3/12)
2021-08-17 00:51:48 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-17 00:58:59 [INFO] Processing SRX2599831. (4/12)
2021-08-17 00:58:59 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-17 01:06:15 [INFO] Processing SRX2599833. (5/12)
2021-08-17 01:06:15 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-17 01:13:34 [INFO] Processing SRX2599842. (6/12)
2021-08-17 01:13:34 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-17 01:20:36 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-17 01:27:53 [INFO] Writing to disk...
2021-08-17 01:29:03 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-17 01:36:21 [INFO] Processing SRX2599837. (7/12)
2021-08-17 01:36:21 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-17 01:43:36 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-17 01:51:02 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-17 01:58:51 [INFO] Processing SRX2599838. (8/12)
2021-08-17 01:58:51 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-17 02:06:14 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-17 02:13:32 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-17 02:20:48 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-17 02:28:12 [INFO] Processing SRX2599835. (9/12)
2021-08-17 02:28:12 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-17 02:35:36 [INFO] Processing SRX2599840. (10/12)
2021-08-17 02:35:36 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-17 02:42:57 [INFO] Writing to disk...
2021-08-17 02:44:36 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-17 02:51:57 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-17 02:59:15 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-17 03:06:37 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-17 03:13:51 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-17 03:21:03 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-17 03:28:24 [INFO] Processing SRX2599832. (11/12)
2021-08-17 03:28:24 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-17 03:35:55 [INFO] Processing SRX2599841. (12/12)
2021-08-17 03:35:55 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-17 03:43:14 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-17 03:50:43 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-17 03:58:08 [INFO] Writing to disk...
2021-08-17 04:00:02 [INFO] Finished.
2021-08-23 13:34:04 [INFO] Starting.
2021-08-23 13:34:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-23 13:34:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-23 13:34:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:04 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:04 [INFO] Writing every 10 Runs.
2021-08-23 13:34:04 [INFO] Processing SRX2599839. (1/12)
2021-08-23 13:34:04 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-23 13:34:11 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-23 13:34:19 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-23 13:34:29 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-23 13:34:34 [INFO] Processing SRX2599834. (2/12)
2021-08-23 13:34:34 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-23 13:34:40 [INFO] Processing SRX2599836. (3/12)
2021-08-23 13:34:40 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-23 13:34:46 [INFO] Processing SRX2599831. (4/12)
2021-08-23 13:34:46 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-23 13:34:56 [INFO] Processing SRX2599833. (5/12)
2021-08-23 13:34:56 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-23 13:35:07 [INFO] Processing SRX2599842. (6/12)
2021-08-23 13:35:07 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-23 13:35:14 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-23 13:35:22 [INFO] Writing to disk...
2021-08-23 13:35:25 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-23 13:35:34 [INFO] Processing SRX2599837. (7/12)
2021-08-23 13:35:34 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-23 13:35:41 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-23 13:35:53 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-23 13:36:03 [INFO] Processing SRX2599838. (8/12)
2021-08-23 13:36:03 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-23 13:36:13 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-23 13:36:22 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-23 13:36:28 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-23 13:36:38 [INFO] Processing SRX2599835. (9/12)
2021-08-23 13:36:38 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-23 13:36:49 [INFO] Processing SRX2599840. (10/12)
2021-08-23 13:36:49 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-23 13:36:55 [INFO] Writing to disk...
2021-08-23 13:37:06 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-23 13:37:13 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-23 13:37:20 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-23 13:37:27 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-23 13:37:32 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-23 13:37:39 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-23 13:37:46 [INFO] Processing SRX2599832. (11/12)
2021-08-23 13:37:46 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-23 13:37:57 [INFO] Processing SRX2599841. (12/12)
2021-08-23 13:37:57 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-23 13:38:05 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-23 13:38:14 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-23 13:38:23 [INFO] Writing to disk...
2021-08-23 13:38:37 [INFO] Finished.
2021-08-30 12:45:58 [INFO] Starting.
2021-08-30 12:45:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-30 12:45:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-30 12:45:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:58 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:58 [INFO] Writing every 10 Runs.
2021-08-30 12:45:58 [INFO] Processing SRX2599839. (1/12)
2021-08-30 12:45:58 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-30 12:46:04 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-30 12:46:11 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-30 12:46:17 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-30 12:46:20 [INFO] Processing SRX2599834. (2/12)
2021-08-30 12:46:20 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-30 12:46:26 [INFO] Processing SRX2599836. (3/12)
2021-08-30 12:46:26 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-30 12:46:31 [INFO] Processing SRX2599831. (4/12)
2021-08-30 12:46:31 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-30 12:46:37 [INFO] Processing SRX2599833. (5/12)
2021-08-30 12:46:37 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-30 12:46:43 [INFO] Processing SRX2599842. (6/12)
2021-08-30 12:46:43 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-30 12:46:47 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-30 12:46:52 [INFO] Writing to disk...
2021-08-30 12:46:53 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-30 12:46:59 [INFO] Processing SRX2599837. (7/12)
2021-08-30 12:46:59 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-30 12:47:05 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-30 12:47:12 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-30 12:47:19 [INFO] Processing SRX2599838. (8/12)
2021-08-30 12:47:19 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-30 12:47:26 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-30 12:47:32 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-30 12:47:37 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-30 12:47:44 [INFO] Processing SRX2599835. (9/12)
2021-08-30 12:47:44 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-30 12:47:51 [INFO] Processing SRX2599840. (10/12)
2021-08-30 12:47:51 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-30 12:47:56 [INFO] Writing to disk...
2021-08-30 12:48:04 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-30 12:48:09 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-30 12:48:15 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-30 12:48:19 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-30 12:48:23 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-30 12:48:29 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-30 12:48:33 [INFO] Processing SRX2599832. (11/12)
2021-08-30 12:48:33 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-30 12:48:41 [INFO] Processing SRX2599841. (12/12)
2021-08-30 12:48:41 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-30 12:48:48 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-30 12:48:56 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-30 12:49:03 [INFO] Writing to disk...
2021-08-30 12:49:11 [INFO] Finished.
2021-08-30 21:28:30 [INFO] Starting.
2021-08-30 21:28:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/
2021-08-30 21:28:30 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP100871/aggregate.hdf5
2021-08-30 21:28:30 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:28:31 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:28:31 [INFO] Writing every 10 Runs.
2021-08-30 21:28:31 [INFO] Processing SRX2599839. (1/12)
2021-08-30 21:28:31 [INFO] Processing SRX2599839-SRR5297639. (1/30)
2021-08-30 21:28:35 [INFO] Processing SRX2599839-SRR5297637. (2/30)
2021-08-30 21:28:38 [INFO] Processing SRX2599839-SRR5297638. (3/30)
2021-08-30 21:28:44 [INFO] Processing SRX2599839-SRR5297640. (4/30)
2021-08-30 21:28:47 [INFO] Processing SRX2599834. (2/12)
2021-08-30 21:28:47 [INFO] Processing SRX2599834-SRR5297627. (5/30)
2021-08-30 21:28:51 [INFO] Processing SRX2599836. (3/12)
2021-08-30 21:28:51 [INFO] Processing SRX2599836-SRR5297629. (6/30)
2021-08-30 21:28:56 [INFO] Processing SRX2599831. (4/12)
2021-08-30 21:28:56 [INFO] Processing SRX2599831-SRR5297624. (7/30)
2021-08-30 21:29:01 [INFO] Processing SRX2599833. (5/12)
2021-08-30 21:29:01 [INFO] Processing SRX2599833-SRR5297626. (8/30)
2021-08-30 21:29:06 [INFO] Processing SRX2599842. (6/12)
2021-08-30 21:29:06 [INFO] Processing SRX2599842-SRR5297653. (9/30)
2021-08-30 21:29:10 [INFO] Processing SRX2599842-SRR5297651. (10/30)
2021-08-30 21:29:15 [INFO] Writing to disk...
2021-08-30 21:29:16 [INFO] Processing SRX2599842-SRR5297652. (11/30)
2021-08-30 21:29:21 [INFO] Processing SRX2599837. (7/12)
2021-08-30 21:29:21 [INFO] Processing SRX2599837-SRR5297630. (12/30)
2021-08-30 21:29:26 [INFO] Processing SRX2599837-SRR5297631. (13/30)
2021-08-30 21:29:31 [INFO] Processing SRX2599837-SRR5297632. (14/30)
2021-08-30 21:29:36 [INFO] Processing SRX2599838. (8/12)
2021-08-30 21:29:36 [INFO] Processing SRX2599838-SRR5297635. (15/30)
2021-08-30 21:29:40 [INFO] Processing SRX2599838-SRR5297634. (16/30)
2021-08-30 21:29:44 [INFO] Processing SRX2599838-SRR5297636. (17/30)
2021-08-30 21:29:49 [INFO] Processing SRX2599838-SRR5297633. (18/30)
2021-08-30 21:29:55 [INFO] Processing SRX2599835. (9/12)
2021-08-30 21:29:55 [INFO] Processing SRX2599835-SRR5297628. (19/30)
2021-08-30 21:30:01 [INFO] Processing SRX2599840. (10/12)
2021-08-30 21:30:01 [INFO] Processing SRX2599840-SRR5297645. (20/30)
2021-08-30 21:30:04 [INFO] Writing to disk...
2021-08-30 21:30:05 [INFO] Processing SRX2599840-SRR5297646. (21/30)
2021-08-30 21:30:10 [INFO] Processing SRX2599840-SRR5297641. (22/30)
2021-08-30 21:30:14 [INFO] Processing SRX2599840-SRR5297644. (23/30)
2021-08-30 21:30:17 [INFO] Processing SRX2599840-SRR5297647. (24/30)
2021-08-30 21:30:19 [INFO] Processing SRX2599840-SRR5297643. (25/30)
2021-08-30 21:30:24 [INFO] Processing SRX2599840-SRR5297642. (26/30)
2021-08-30 21:30:27 [INFO] Processing SRX2599832. (11/12)
2021-08-30 21:30:27 [INFO] Processing SRX2599832-SRR5297625. (27/30)
2021-08-30 21:30:33 [INFO] Processing SRX2599841. (12/12)
2021-08-30 21:30:33 [INFO] Processing SRX2599841-SRR5297650. (28/30)
2021-08-30 21:30:37 [INFO] Processing SRX2599841-SRR5297649. (29/30)
2021-08-30 21:30:42 [INFO] Processing SRX2599841-SRR5297648. (30/30)
2021-08-30 21:30:47 [INFO] Writing to disk...
2021-08-30 21:30:48 [INFO] Finished.