2021-08-02 14:43:29 [INFO] Starting.
2021-08-02 14:43:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-02 14:43:29 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-02 14:43:29 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:29 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX2840854. (1/30)
2021-08-02 14:43:30 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-02 14:43:46 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-02 14:43:58 [INFO] Processing SRX2840841. (2/30)
2021-08-02 14:43:58 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-02 14:44:13 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-02 14:44:17 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-02 14:44:31 [INFO] Processing SRX4223388. (3/30)
2021-08-02 14:44:31 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-02 14:44:48 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-02 14:45:11 [INFO] Processing SRX2840848. (4/30)
2021-08-02 14:45:11 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-02 14:45:22 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-02 14:45:39 [INFO] Processing SRX2840847. (5/30)
2021-08-02 14:45:39 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-02 14:45:54 [INFO] Writing to disk...
2021-08-02 14:46:06 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-02 14:46:21 [INFO] Processing SRX2840857. (6/30)
2021-08-02 14:46:21 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-02 14:46:33 [INFO] Processing SRX4223389. (7/30)
2021-08-02 14:46:33 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-02 14:47:00 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-02 14:47:14 [INFO] Processing SRX2840839. (8/30)
2021-08-02 14:47:14 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-02 14:47:32 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-02 14:47:51 [INFO] Processing SRX2840850. (9/30)
2021-08-02 14:47:51 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-02 14:48:02 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-02 14:48:21 [INFO] Processing SRX2840835. (10/30)
2021-08-02 14:48:21 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-02 14:48:41 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-02 14:49:00 [INFO] Writing to disk...
2021-08-02 14:49:23 [INFO] Processing SRX4223391. (11/30)
2021-08-02 14:49:23 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-02 14:49:44 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-02 14:50:01 [INFO] Processing SRX2840843. (12/30)
2021-08-02 14:50:01 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-02 14:50:24 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-02 14:50:39 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-02 14:50:50 [INFO] Processing SRX2840856. (13/30)
2021-08-02 14:50:50 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-02 14:51:09 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-02 14:51:26 [INFO] Processing SRX2840845. (14/30)
2021-08-02 14:51:26 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-02 14:51:50 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-02 14:52:16 [INFO] Processing SRX2840859. (15/30)
2021-08-02 14:52:16 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-02 14:52:35 [INFO] Writing to disk...
2021-08-02 14:53:04 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-02 14:53:23 [INFO] Processing SRX2840855. (16/30)
2021-08-02 14:53:23 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-02 14:53:43 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-02 14:54:04 [INFO] Processing SRX2840860. (17/30)
2021-08-02 14:54:04 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-02 14:54:22 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-02 14:54:42 [INFO] Processing SRX2840851. (18/30)
2021-08-02 14:54:42 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-02 14:54:57 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-02 14:55:14 [INFO] Processing SRX2840844. (19/30)
2021-08-02 14:55:14 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-02 14:55:27 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-02 14:55:41 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-02 14:55:59 [INFO] Writing to disk...
2021-08-02 14:56:32 [INFO] Processing SRX2840836. (20/30)
2021-08-02 14:56:32 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-02 14:56:51 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-02 14:57:08 [INFO] Processing SRX2840842. (21/30)
2021-08-02 14:57:08 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-02 14:57:22 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-02 14:57:54 [INFO] Processing SRX2840858. (22/30)
2021-08-02 14:57:54 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-02 14:58:09 [INFO] Processing SRX2840846. (23/30)
2021-08-02 14:58:09 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-02 14:58:18 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-02 14:58:35 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-02 14:58:56 [INFO] Processing SRX2840849. (24/30)
2021-08-02 14:58:56 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-02 14:59:08 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-02 14:59:25 [INFO] Writing to disk...
2021-08-02 15:00:02 [INFO] Processing SRX2840840. (25/30)
2021-08-02 15:00:02 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-02 15:00:29 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-02 15:00:52 [INFO] Processing SRX2840853. (26/30)
2021-08-02 15:00:52 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-02 15:01:07 [INFO] Processing SRX4223390. (27/30)
2021-08-02 15:01:07 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-02 15:01:22 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-02 15:01:47 [INFO] Processing SRX2840838. (28/30)
2021-08-02 15:01:47 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-02 15:02:04 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-02 15:02:27 [INFO] Processing SRX2840837. (29/30)
2021-08-02 15:02:27 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-02 15:02:48 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-02 15:03:05 [INFO] Processing SRX2840852. (30/30)
2021-08-02 15:03:05 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-02 15:03:20 [INFO] Writing to disk...
2021-08-02 15:04:05 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:21 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:21 [INFO] Writing every 10 Runs.
2021-08-12 14:31:21 [INFO] Processing SRX2840854. (1/30)
2021-08-12 14:31:21 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-12 14:31:40 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-12 14:31:54 [INFO] Processing SRX2840841. (2/30)
2021-08-12 14:31:54 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-12 14:32:15 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-12 14:32:20 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-12 14:32:38 [INFO] Processing SRX4223388. (3/30)
2021-08-12 14:32:38 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-12 14:32:57 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-12 14:33:19 [INFO] Processing SRX2840848. (4/30)
2021-08-12 14:33:19 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-12 14:33:31 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-12 14:33:51 [INFO] Processing SRX2840847. (5/30)
2021-08-12 14:33:51 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-12 14:34:10 [INFO] Writing to disk...
2021-08-12 14:34:22 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-12 14:34:40 [INFO] Processing SRX2840857. (6/30)
2021-08-12 14:34:40 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-12 14:34:55 [INFO] Processing SRX4223389. (7/30)
2021-08-12 14:34:55 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-12 14:35:27 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-12 14:35:44 [INFO] Processing SRX2840839. (8/30)
2021-08-12 14:35:44 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-12 14:36:06 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-12 14:36:27 [INFO] Processing SRX2840850. (9/30)
2021-08-12 14:36:27 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-12 14:36:40 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-12 14:36:59 [INFO] Processing SRX2840835. (10/30)
2021-08-12 14:36:59 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-12 14:37:19 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-12 14:37:41 [INFO] Writing to disk...
2021-08-12 14:37:59 [INFO] Processing SRX4223391. (11/30)
2021-08-12 14:37:59 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-12 14:38:22 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-12 14:38:39 [INFO] Processing SRX2840843. (12/30)
2021-08-12 14:38:39 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-12 14:39:02 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-12 14:39:17 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-12 14:39:27 [INFO] Processing SRX2840856. (13/30)
2021-08-12 14:39:27 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-12 14:39:46 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-12 14:40:02 [INFO] Processing SRX2840845. (14/30)
2021-08-12 14:40:02 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-12 14:40:30 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-12 14:40:53 [INFO] Processing SRX2840859. (15/30)
2021-08-12 14:40:53 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-12 14:41:12 [INFO] Writing to disk...
2021-08-12 14:41:32 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-12 14:41:54 [INFO] Processing SRX2840855. (16/30)
2021-08-12 14:41:54 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-12 14:42:09 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-12 14:42:32 [INFO] Processing SRX2840860. (17/30)
2021-08-12 14:42:32 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-12 14:42:50 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-12 14:43:06 [INFO] Processing SRX2840851. (18/30)
2021-08-12 14:43:06 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-12 14:43:24 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-12 14:43:40 [INFO] Processing SRX2840844. (19/30)
2021-08-12 14:43:40 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-12 14:43:50 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-12 14:44:04 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-12 14:44:20 [INFO] Writing to disk...
2021-08-12 14:44:41 [INFO] Processing SRX2840836. (20/30)
2021-08-12 14:44:41 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-12 14:44:57 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-12 14:45:14 [INFO] Processing SRX2840842. (21/30)
2021-08-12 14:45:14 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-12 14:45:26 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-12 14:45:53 [INFO] Processing SRX2840858. (22/30)
2021-08-12 14:45:53 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-12 14:46:08 [INFO] Processing SRX2840846. (23/30)
2021-08-12 14:46:08 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-12 14:46:15 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-12 14:46:31 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-12 14:46:48 [INFO] Processing SRX2840849. (24/30)
2021-08-12 14:46:48 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-12 14:46:58 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-12 14:47:13 [INFO] Writing to disk...
2021-08-12 14:47:38 [INFO] Processing SRX2840840. (25/30)
2021-08-12 14:47:38 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-12 14:47:58 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-12 14:48:19 [INFO] Processing SRX2840853. (26/30)
2021-08-12 14:48:19 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-12 14:48:33 [INFO] Processing SRX4223390. (27/30)
2021-08-12 14:48:33 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-12 14:48:47 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-12 14:49:11 [INFO] Processing SRX2840838. (28/30)
2021-08-12 14:49:11 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-12 14:49:28 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-12 14:49:47 [INFO] Processing SRX2840837. (29/30)
2021-08-12 14:49:47 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-12 14:50:04 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-12 14:50:21 [INFO] Processing SRX2840852. (30/30)
2021-08-12 14:50:21 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-12 14:50:32 [INFO] Writing to disk...
2021-08-12 14:50:56 [INFO] Finished.
2021-08-12 16:34:16 [INFO] Starting.
2021-08-12 16:34:16 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-12 16:34:16 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-12 16:34:16 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:34:17 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:34:17 [INFO] Writing every 10 Runs.
2021-08-12 16:34:17 [INFO] Processing SRX2840854. (1/30)
2021-08-12 16:34:17 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-12 16:34:37 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-12 16:34:52 [INFO] Processing SRX2840841. (2/30)
2021-08-12 16:34:52 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-12 16:35:10 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-12 16:35:18 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-12 16:35:36 [INFO] Processing SRX4223388. (3/30)
2021-08-12 16:35:36 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-12 16:35:59 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-12 16:36:26 [INFO] Processing SRX2840848. (4/30)
2021-08-12 16:36:26 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-12 16:36:39 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-12 16:37:03 [INFO] Processing SRX2840847. (5/30)
2021-08-12 16:37:03 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-12 16:37:24 [INFO] Writing to disk...
2021-08-12 16:37:39 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-12 16:38:02 [INFO] Processing SRX2840857. (6/30)
2021-08-12 16:38:02 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-12 16:38:20 [INFO] Processing SRX4223389. (7/30)
2021-08-12 16:38:20 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-12 16:38:59 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-12 16:39:18 [INFO] Processing SRX2840839. (8/30)
2021-08-12 16:39:18 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-12 16:39:40 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-12 16:40:03 [INFO] Processing SRX2840850. (9/30)
2021-08-12 16:40:03 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-12 16:40:18 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-12 16:40:40 [INFO] Processing SRX2840835. (10/30)
2021-08-12 16:40:40 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-12 16:41:09 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-12 16:41:35 [INFO] Writing to disk...
2021-08-12 16:41:55 [INFO] Processing SRX4223391. (11/30)
2021-08-12 16:41:55 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-12 16:42:20 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-12 16:42:38 [INFO] Processing SRX2840843. (12/30)
2021-08-12 16:42:38 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-12 16:43:04 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-12 16:43:23 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-12 16:43:34 [INFO] Processing SRX2840856. (13/30)
2021-08-12 16:43:34 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-12 16:43:54 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-12 16:44:12 [INFO] Processing SRX2840845. (14/30)
2021-08-12 16:44:12 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-12 16:44:39 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-12 16:45:04 [INFO] Processing SRX2840859. (15/30)
2021-08-12 16:45:04 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-12 16:45:29 [INFO] Writing to disk...
2021-08-12 16:45:51 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-12 16:46:14 [INFO] Processing SRX2840855. (16/30)
2021-08-12 16:46:14 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-12 16:46:35 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-12 16:47:00 [INFO] Processing SRX2840860. (17/30)
2021-08-12 16:47:00 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-12 16:47:19 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-12 16:47:43 [INFO] Processing SRX2840851. (18/30)
2021-08-12 16:47:43 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-12 16:48:02 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-12 16:48:22 [INFO] Processing SRX2840844. (19/30)
2021-08-12 16:48:22 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-12 16:48:37 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-12 16:48:53 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-12 16:49:16 [INFO] Writing to disk...
2021-08-12 16:49:42 [INFO] Processing SRX2840836. (20/30)
2021-08-12 16:49:42 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-12 16:50:08 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-12 16:50:38 [INFO] Processing SRX2840842. (21/30)
2021-08-12 16:50:38 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-12 16:50:57 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-12 16:51:40 [INFO] Processing SRX2840858. (22/30)
2021-08-12 16:51:40 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-12 16:51:57 [INFO] Processing SRX2840846. (23/30)
2021-08-12 16:51:57 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-12 16:52:07 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-12 16:52:30 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-12 16:52:55 [INFO] Processing SRX2840849. (24/30)
2021-08-12 16:52:55 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-12 16:53:11 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-12 16:53:33 [INFO] Writing to disk...
2021-08-12 16:54:02 [INFO] Processing SRX2840840. (25/30)
2021-08-12 16:54:02 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-12 16:54:29 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-12 16:54:51 [INFO] Processing SRX2840853. (26/30)
2021-08-12 16:54:51 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-12 16:55:07 [INFO] Processing SRX4223390. (27/30)
2021-08-12 16:55:07 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-12 16:55:25 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-12 16:55:51 [INFO] Processing SRX2840838. (28/30)
2021-08-12 16:55:51 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-12 16:56:12 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-12 16:56:42 [INFO] Processing SRX2840837. (29/30)
2021-08-12 16:56:42 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-12 16:57:09 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-12 16:57:31 [INFO] Processing SRX2840852. (30/30)
2021-08-12 16:57:31 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-12 16:57:49 [INFO] Writing to disk...
2021-08-12 16:58:20 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:54 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:54 [INFO] Writing every 10 Runs.
2021-08-13 09:44:54 [INFO] Processing SRX2840854. (1/30)
2021-08-13 09:44:54 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-13 09:45:11 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-13 09:45:22 [INFO] Processing SRX2840841. (2/30)
2021-08-13 09:45:22 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-13 09:45:34 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-13 09:45:39 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-13 09:45:52 [INFO] Processing SRX4223388. (3/30)
2021-08-13 09:45:52 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-13 09:46:05 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-13 09:46:26 [INFO] Processing SRX2840848. (4/30)
2021-08-13 09:46:26 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-13 09:46:38 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-13 09:46:57 [INFO] Processing SRX2840847. (5/30)
2021-08-13 09:46:57 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-13 09:47:10 [INFO] Writing to disk...
2021-08-13 09:47:23 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-13 09:47:37 [INFO] Processing SRX2840857. (6/30)
2021-08-13 09:47:37 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-13 09:47:50 [INFO] Processing SRX4223389. (7/30)
2021-08-13 09:47:50 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-13 09:48:16 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-13 09:48:32 [INFO] Processing SRX2840839. (8/30)
2021-08-13 09:48:32 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-13 09:48:56 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-13 09:49:17 [INFO] Processing SRX2840850. (9/30)
2021-08-13 09:49:17 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-13 09:49:29 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-13 09:49:47 [INFO] Processing SRX2840835. (10/30)
2021-08-13 09:49:47 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-13 09:50:07 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-13 09:50:29 [INFO] Writing to disk...
2021-08-13 09:50:53 [INFO] Processing SRX4223391. (11/30)
2021-08-13 09:50:53 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-13 09:51:16 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-13 09:51:37 [INFO] Processing SRX2840843. (12/30)
2021-08-13 09:51:37 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-13 09:52:03 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-13 09:52:19 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-13 09:52:31 [INFO] Processing SRX2840856. (13/30)
2021-08-13 09:52:31 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-13 09:52:49 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-13 09:53:07 [INFO] Processing SRX2840845. (14/30)
2021-08-13 09:53:07 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-13 09:53:33 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-13 09:53:56 [INFO] Processing SRX2840859. (15/30)
2021-08-13 09:53:56 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-13 09:54:20 [INFO] Writing to disk...
2021-08-13 09:54:50 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-13 09:55:12 [INFO] Processing SRX2840855. (16/30)
2021-08-13 09:55:12 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-13 09:55:30 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-13 09:55:52 [INFO] Processing SRX2840860. (17/30)
2021-08-13 09:55:52 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-13 09:56:12 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-13 09:56:33 [INFO] Processing SRX2840851. (18/30)
2021-08-13 09:56:33 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-13 09:56:50 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-13 09:57:10 [INFO] Processing SRX2840844. (19/30)
2021-08-13 09:57:10 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-13 09:57:25 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-13 09:57:40 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-13 09:58:01 [INFO] Writing to disk...
2021-08-13 09:58:38 [INFO] Processing SRX2840836. (20/30)
2021-08-13 09:58:38 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-13 09:59:02 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-13 09:59:22 [INFO] Processing SRX2840842. (21/30)
2021-08-13 09:59:22 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-13 09:59:40 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-13 10:00:12 [INFO] Processing SRX2840858. (22/30)
2021-08-13 10:00:12 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-13 10:00:29 [INFO] Processing SRX2840846. (23/30)
2021-08-13 10:00:29 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-13 10:00:40 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-13 10:00:57 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-13 10:01:20 [INFO] Processing SRX2840849. (24/30)
2021-08-13 10:01:20 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-13 10:01:36 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-13 10:01:58 [INFO] Writing to disk...
2021-08-13 10:02:41 [INFO] Processing SRX2840840. (25/30)
2021-08-13 10:02:41 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-13 10:03:05 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-13 10:03:29 [INFO] Processing SRX2840853. (26/30)
2021-08-13 10:03:29 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-13 10:03:47 [INFO] Processing SRX4223390. (27/30)
2021-08-13 10:03:47 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-13 10:04:03 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-13 10:04:34 [INFO] Processing SRX2840838. (28/30)
2021-08-13 10:04:34 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-13 10:04:56 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-13 10:05:25 [INFO] Processing SRX2840837. (29/30)
2021-08-13 10:05:25 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-13 10:05:54 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-13 10:06:16 [INFO] Processing SRX2840852. (30/30)
2021-08-13 10:06:16 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-13 10:06:34 [INFO] Writing to disk...
2021-08-13 10:07:20 [INFO] Finished.
2021-08-13 17:23:01 [INFO] Starting.
2021-08-13 17:23:01 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-13 17:23:01 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-13 17:23:01 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:23:02 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:23:02 [INFO] Writing every 10 Runs.
2021-08-13 17:23:02 [INFO] Processing SRX2840854. (1/30)
2021-08-13 17:23:02 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-13 17:23:25 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-13 17:23:41 [INFO] Processing SRX2840841. (2/30)
2021-08-13 17:23:41 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-13 17:24:03 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-13 17:24:10 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-13 17:24:31 [INFO] Processing SRX4223388. (3/30)
2021-08-13 17:24:31 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-13 17:24:56 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-13 17:25:26 [INFO] Processing SRX2840848. (4/30)
2021-08-13 17:25:26 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-13 17:25:42 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-13 17:26:06 [INFO] Processing SRX2840847. (5/30)
2021-08-13 17:26:06 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-13 17:26:30 [INFO] Writing to disk...
2021-08-13 17:26:48 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-13 17:27:08 [INFO] Processing SRX2840857. (6/30)
2021-08-13 17:27:08 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-13 17:27:29 [INFO] Processing SRX4223389. (7/30)
2021-08-13 17:27:29 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-13 17:28:12 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-13 17:28:34 [INFO] Processing SRX2840839. (8/30)
2021-08-13 17:28:34 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-13 17:29:07 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-13 17:29:37 [INFO] Processing SRX2840850. (9/30)
2021-08-13 17:29:37 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-13 17:29:56 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-13 17:30:25 [INFO] Processing SRX2840835. (10/30)
2021-08-13 17:30:25 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-13 17:30:58 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-13 17:31:30 [INFO] Writing to disk...
2021-08-13 17:32:01 [INFO] Processing SRX4223391. (11/30)
2021-08-13 17:32:01 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-13 17:32:37 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-13 17:33:03 [INFO] Processing SRX2840843. (12/30)
2021-08-13 17:33:03 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-13 17:33:39 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-13 17:34:04 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-13 17:34:22 [INFO] Processing SRX2840856. (13/30)
2021-08-13 17:34:22 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-13 17:34:54 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-13 17:35:29 [INFO] Processing SRX2840845. (14/30)
2021-08-13 17:35:29 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-13 17:36:06 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-13 17:36:41 [INFO] Processing SRX2840859. (15/30)
2021-08-13 17:36:41 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-13 17:37:18 [INFO] Writing to disk...
2021-08-13 17:38:01 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-13 17:38:35 [INFO] Processing SRX2840855. (16/30)
2021-08-13 17:38:35 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-13 17:39:03 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-13 17:39:37 [INFO] Processing SRX2840860. (17/30)
2021-08-13 17:39:37 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-13 17:40:06 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-13 17:40:36 [INFO] Processing SRX2840851. (18/30)
2021-08-13 17:40:36 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-13 17:41:01 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-13 17:41:27 [INFO] Processing SRX2840844. (19/30)
2021-08-13 17:41:27 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-13 17:41:46 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-13 17:42:09 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-13 17:42:38 [INFO] Writing to disk...
2021-08-13 17:43:25 [INFO] Processing SRX2840836. (20/30)
2021-08-13 17:43:25 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-13 17:43:51 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-13 17:44:17 [INFO] Processing SRX2840842. (21/30)
2021-08-13 17:44:17 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-13 17:44:40 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-13 17:45:29 [INFO] Processing SRX2840858. (22/30)
2021-08-13 17:45:29 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-13 17:45:56 [INFO] Processing SRX2840846. (23/30)
2021-08-13 17:45:56 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-13 17:46:12 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-13 17:46:37 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-13 17:47:05 [INFO] Processing SRX2840849. (24/30)
2021-08-13 17:47:05 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-13 17:47:27 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-13 17:47:58 [INFO] Writing to disk...
2021-08-13 17:48:59 [INFO] Processing SRX2840840. (25/30)
2021-08-13 17:48:59 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-13 17:49:35 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-13 17:50:08 [INFO] Processing SRX2840853. (26/30)
2021-08-13 17:50:08 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-13 17:50:34 [INFO] Processing SRX4223390. (27/30)
2021-08-13 17:50:34 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-13 17:50:57 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-13 17:51:33 [INFO] Processing SRX2840838. (28/30)
2021-08-13 17:51:33 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-13 17:52:01 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-13 17:52:33 [INFO] Processing SRX2840837. (29/30)
2021-08-13 17:52:33 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-13 17:53:05 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-13 17:53:32 [INFO] Processing SRX2840852. (30/30)
2021-08-13 17:53:32 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-13 17:53:57 [INFO] Writing to disk...
2021-08-13 17:54:56 [INFO] Finished.
2021-08-16 11:36:45 [INFO] Starting.
2021-08-16 11:36:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-16 11:36:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-16 11:36:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:46 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:46 [INFO] Writing every 10 Runs.
2021-08-16 11:36:46 [INFO] Processing SRX2840854. (1/30)
2021-08-16 11:36:46 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-16 11:40:06 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-16 11:50:19 [INFO] Processing SRX2840841. (2/30)
2021-08-16 11:50:19 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-16 11:56:59 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-16 12:03:12 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-16 12:09:21 [INFO] Processing SRX4223388. (3/30)
2021-08-16 12:09:21 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-16 12:15:39 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-16 12:22:22 [INFO] Processing SRX2840848. (4/30)
2021-08-16 12:22:22 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-16 12:28:54 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-16 12:35:18 [INFO] Processing SRX2840847. (5/30)
2021-08-16 12:35:18 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-16 12:41:19 [INFO] Writing to disk...
2021-08-16 12:42:25 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-16 12:48:20 [INFO] Processing SRX2840857. (6/30)
2021-08-16 12:48:20 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-16 12:54:24 [INFO] Processing SRX4223389. (7/30)
2021-08-16 12:54:24 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-16 13:00:43 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-16 13:06:54 [INFO] Processing SRX2840839. (8/30)
2021-08-16 13:06:54 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-16 13:13:22 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-16 13:19:56 [INFO] Processing SRX2840850. (9/30)
2021-08-16 13:19:56 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-16 13:26:24 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-16 13:32:53 [INFO] Processing SRX2840835. (10/30)
2021-08-16 13:32:53 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-16 13:39:32 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-16 13:46:17 [INFO] Writing to disk...
2021-08-16 13:47:58 [INFO] Processing SRX4223391. (11/30)
2021-08-16 13:47:58 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-16 13:54:32 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-16 14:01:03 [INFO] Processing SRX2840843. (12/30)
2021-08-16 14:01:03 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-16 14:08:10 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-16 14:14:53 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-16 14:21:11 [INFO] Processing SRX2840856. (13/30)
2021-08-16 14:21:11 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-16 14:27:51 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-16 14:34:25 [INFO] Processing SRX2840845. (14/30)
2021-08-16 14:34:25 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-16 14:41:02 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-16 14:47:46 [INFO] Processing SRX2840859. (15/30)
2021-08-16 14:47:46 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-16 14:54:24 [INFO] Writing to disk...
2021-08-16 14:56:06 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-16 15:02:38 [INFO] Processing SRX2840855. (16/30)
2021-08-16 15:02:38 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-16 15:09:33 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-16 15:16:19 [INFO] Processing SRX2840860. (17/30)
2021-08-16 15:16:19 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-16 15:22:56 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-16 15:29:47 [INFO] Processing SRX2840851. (18/30)
2021-08-16 15:29:47 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-16 15:36:37 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-16 15:43:26 [INFO] Processing SRX2840844. (19/30)
2021-08-16 15:43:26 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-16 15:50:22 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-16 15:57:22 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-16 16:04:16 [INFO] Writing to disk...
2021-08-16 16:06:25 [INFO] Processing SRX2840836. (20/30)
2021-08-16 16:06:25 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-16 16:13:20 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-16 16:20:28 [INFO] Processing SRX2840842. (21/30)
2021-08-16 16:20:28 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-16 16:36:44 [INFO] Starting.
2021-08-16 16:36:44 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-16 16:36:44 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-16 16:36:44 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 16:36:44 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 16:36:44 [INFO] Writing every 10 Runs.
2021-08-16 16:36:44 [INFO] Processing SRX2840854. (1/30)
2021-08-16 16:36:44 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-16 16:39:32 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-16 16:45:13 [INFO] Processing SRX2840841. (2/30)
2021-08-16 16:45:13 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-16 16:51:01 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-16 16:56:46 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-16 17:02:15 [INFO] Processing SRX4223388. (3/30)
2021-08-16 17:02:15 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-16 17:07:40 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-16 17:13:12 [INFO] Processing SRX2840848. (4/30)
2021-08-16 17:13:12 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-16 17:18:33 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-16 17:24:03 [INFO] Processing SRX2840847. (5/30)
2021-08-16 17:24:03 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-16 17:29:32 [INFO] Writing to disk...
2021-08-16 17:30:16 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-16 17:35:45 [INFO] Processing SRX2840857. (6/30)
2021-08-16 17:35:45 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-16 17:41:12 [INFO] Processing SRX4223389. (7/30)
2021-08-16 17:41:12 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-16 17:46:54 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-16 17:52:22 [INFO] Processing SRX2840839. (8/30)
2021-08-16 17:52:22 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-16 17:58:00 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-16 18:06:07 [INFO] Processing SRX2840850. (9/30)
2021-08-16 18:06:07 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-16 18:14:41 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-16 18:23:14 [INFO] Processing SRX2840835. (10/30)
2021-08-16 18:23:14 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-16 18:30:42 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-16 18:40:08 [INFO] Writing to disk...
2021-08-16 18:47:10 [INFO] Processing SRX4223391. (11/30)
2021-08-16 18:47:10 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-16 18:54:33 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-16 19:00:48 [INFO] Processing SRX2840843. (12/30)
2021-08-16 19:00:48 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-16 19:07:25 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-16 19:14:13 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-16 19:22:10 [INFO] Processing SRX2840856. (13/30)
2021-08-16 19:22:10 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-16 19:29:15 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-16 19:36:09 [INFO] Processing SRX2840845. (14/30)
2021-08-16 19:36:09 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-16 19:43:58 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-16 19:51:10 [INFO] Processing SRX2840859. (15/30)
2021-08-16 19:51:10 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-16 19:58:09 [INFO] Writing to disk...
2021-08-16 19:59:43 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-16 20:06:47 [INFO] Processing SRX2840855. (16/30)
2021-08-16 20:06:47 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-16 20:13:59 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-16 20:21:07 [INFO] Processing SRX2840860. (17/30)
2021-08-16 20:21:07 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-16 20:28:08 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-16 20:35:41 [INFO] Processing SRX2840851. (18/30)
2021-08-16 20:35:41 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-16 20:43:48 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-16 20:50:52 [INFO] Processing SRX2840844. (19/30)
2021-08-16 20:50:52 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-16 20:58:13 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-16 21:05:25 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-16 21:14:06 [INFO] Writing to disk...
2021-08-16 21:18:31 [INFO] Processing SRX2840836. (20/30)
2021-08-16 21:18:31 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-16 21:25:15 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-16 21:31:16 [INFO] Processing SRX2840842. (21/30)
2021-08-16 21:31:16 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-16 21:37:13 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-16 21:43:30 [INFO] Processing SRX2840858. (22/30)
2021-08-16 21:43:30 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-16 21:49:28 [INFO] Processing SRX2840846. (23/30)
2021-08-16 21:49:28 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-16 21:55:21 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-16 22:01:22 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-16 22:07:29 [INFO] Processing SRX2840849. (24/30)
2021-08-16 22:07:29 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-16 22:13:25 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-16 22:19:31 [INFO] Writing to disk...
2021-08-16 22:21:21 [INFO] Processing SRX2840840. (25/30)
2021-08-16 22:21:21 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-16 22:27:33 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-16 22:33:41 [INFO] Processing SRX2840853. (26/30)
2021-08-16 22:33:41 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-16 22:39:43 [INFO] Processing SRX4223390. (27/30)
2021-08-16 22:39:43 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-16 22:45:42 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-16 22:51:56 [INFO] Processing SRX2840838. (28/30)
2021-08-16 22:51:56 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-16 22:58:04 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-16 23:04:20 [INFO] Processing SRX2840837. (29/30)
2021-08-16 23:04:20 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-16 23:10:36 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-16 23:16:55 [INFO] Processing SRX2840852. (30/30)
2021-08-16 23:16:55 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-16 23:24:35 [INFO] Writing to disk...
2021-08-16 23:27:13 [INFO] Finished.
2021-08-23 13:34:05 [INFO] Starting.
2021-08-23 13:34:05 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-23 13:34:05 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-23 13:34:05 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:05 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:05 [INFO] Writing every 10 Runs.
2021-08-23 13:34:05 [INFO] Processing SRX2840854. (1/30)
2021-08-23 13:34:05 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-23 13:34:16 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-23 13:34:25 [INFO] Processing SRX2840841. (2/30)
2021-08-23 13:34:25 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-23 13:34:35 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-23 13:34:38 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-23 13:34:48 [INFO] Processing SRX4223388. (3/30)
2021-08-23 13:34:48 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-23 13:35:00 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-23 13:35:14 [INFO] Processing SRX2840848. (4/30)
2021-08-23 13:35:14 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-23 13:35:21 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-23 13:35:33 [INFO] Processing SRX2840847. (5/30)
2021-08-23 13:35:33 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-23 13:35:43 [INFO] Writing to disk...
2021-08-23 13:35:51 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-23 13:36:01 [INFO] Processing SRX2840857. (6/30)
2021-08-23 13:36:01 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-23 13:36:09 [INFO] Processing SRX4223389. (7/30)
2021-08-23 13:36:09 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-23 13:36:24 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-23 13:36:34 [INFO] Processing SRX2840839. (8/30)
2021-08-23 13:36:34 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-23 13:36:47 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-23 13:36:59 [INFO] Processing SRX2840850. (9/30)
2021-08-23 13:36:59 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-23 13:37:07 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-23 13:37:20 [INFO] Processing SRX2840835. (10/30)
2021-08-23 13:37:20 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-23 13:37:32 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-23 13:37:47 [INFO] Writing to disk...
2021-08-23 13:38:01 [INFO] Processing SRX4223391. (11/30)
2021-08-23 13:38:01 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-23 13:38:16 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-23 13:38:27 [INFO] Processing SRX2840843. (12/30)
2021-08-23 13:38:27 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-23 13:38:42 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-23 13:38:52 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-23 13:38:59 [INFO] Processing SRX2840856. (13/30)
2021-08-23 13:38:59 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-23 13:39:09 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-23 13:39:20 [INFO] Processing SRX2840845. (14/30)
2021-08-23 13:39:20 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-23 13:39:36 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-23 13:39:51 [INFO] Processing SRX2840859. (15/30)
2021-08-23 13:39:51 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-23 13:40:04 [INFO] Writing to disk...
2021-08-23 13:40:20 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-23 13:40:30 [INFO] Processing SRX2840855. (16/30)
2021-08-23 13:40:30 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-23 13:40:41 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-23 13:40:53 [INFO] Processing SRX2840860. (17/30)
2021-08-23 13:40:53 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-23 13:41:02 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-23 13:41:13 [INFO] Processing SRX2840851. (18/30)
2021-08-23 13:41:13 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-23 13:41:22 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-23 13:41:32 [INFO] Processing SRX2840844. (19/30)
2021-08-23 13:41:32 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-23 13:41:40 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-23 13:41:48 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-23 13:42:01 [INFO] Writing to disk...
2021-08-23 13:42:15 [INFO] Processing SRX2840836. (20/30)
2021-08-23 13:42:15 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-23 13:42:25 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-23 13:42:34 [INFO] Processing SRX2840842. (21/30)
2021-08-23 13:42:34 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-23 13:42:40 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-23 13:42:57 [INFO] Processing SRX2840858. (22/30)
2021-08-23 13:42:57 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-23 13:43:05 [INFO] Processing SRX2840846. (23/30)
2021-08-23 13:43:05 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-23 13:43:09 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-23 13:43:19 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-23 13:43:28 [INFO] Processing SRX2840849. (24/30)
2021-08-23 13:43:28 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-23 13:43:34 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-23 13:43:42 [INFO] Writing to disk...
2021-08-23 13:43:57 [INFO] Processing SRX2840840. (25/30)
2021-08-23 13:43:57 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-23 13:44:08 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-23 13:44:19 [INFO] Processing SRX2840853. (26/30)
2021-08-23 13:44:19 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-23 13:44:27 [INFO] Processing SRX4223390. (27/30)
2021-08-23 13:44:27 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-23 13:44:34 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-23 13:44:48 [INFO] Processing SRX2840838. (28/30)
2021-08-23 13:44:48 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-23 13:44:56 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-23 13:45:08 [INFO] Processing SRX2840837. (29/30)
2021-08-23 13:45:08 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-23 13:45:21 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-23 13:45:29 [INFO] Processing SRX2840852. (30/30)
2021-08-23 13:45:29 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-23 13:45:36 [INFO] Writing to disk...
2021-08-23 13:45:52 [INFO] Finished.
2021-08-30 12:45:58 [INFO] Starting.
2021-08-30 12:45:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-30 12:45:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-30 12:45:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:59 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:59 [INFO] Writing every 10 Runs.
2021-08-30 12:45:59 [INFO] Processing SRX2840854. (1/30)
2021-08-30 12:45:59 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-30 12:46:07 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-30 12:46:16 [INFO] Processing SRX2840841. (2/30)
2021-08-30 12:46:16 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-30 12:46:20 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-30 12:46:24 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-30 12:46:31 [INFO] Processing SRX4223388. (3/30)
2021-08-30 12:46:31 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-30 12:46:40 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-30 12:46:46 [INFO] Processing SRX2840848. (4/30)
2021-08-30 12:46:46 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-30 12:46:51 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-30 12:46:59 [INFO] Processing SRX2840847. (5/30)
2021-08-30 12:46:59 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-30 12:47:08 [INFO] Writing to disk...
2021-08-30 12:47:09 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-30 12:47:17 [INFO] Processing SRX2840857. (6/30)
2021-08-30 12:47:17 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-30 12:47:24 [INFO] Processing SRX4223389. (7/30)
2021-08-30 12:47:24 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-30 12:47:36 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-30 12:47:43 [INFO] Processing SRX2840839. (8/30)
2021-08-30 12:47:43 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-30 12:47:52 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-30 12:47:59 [INFO] Processing SRX2840850. (9/30)
2021-08-30 12:47:59 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-30 12:48:04 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-30 12:48:11 [INFO] Processing SRX2840835. (10/30)
2021-08-30 12:48:11 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-30 12:48:18 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-30 12:48:27 [INFO] Writing to disk...
2021-08-30 12:48:37 [INFO] Processing SRX4223391. (11/30)
2021-08-30 12:48:37 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-30 12:48:45 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-30 12:48:52 [INFO] Processing SRX2840843. (12/30)
2021-08-30 12:48:52 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-30 12:49:02 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-30 12:49:09 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-30 12:49:14 [INFO] Processing SRX2840856. (13/30)
2021-08-30 12:49:14 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-30 12:49:20 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-30 12:49:27 [INFO] Processing SRX2840845. (14/30)
2021-08-30 12:49:27 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-30 12:49:37 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-30 12:49:46 [INFO] Processing SRX2840859. (15/30)
2021-08-30 12:49:46 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-30 12:49:55 [INFO] Writing to disk...
2021-08-30 12:50:05 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-30 12:50:11 [INFO] Processing SRX2840855. (16/30)
2021-08-30 12:50:11 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-30 12:50:19 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-30 12:50:29 [INFO] Processing SRX2840860. (17/30)
2021-08-30 12:50:29 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-30 12:50:38 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-30 12:50:46 [INFO] Processing SRX2840851. (18/30)
2021-08-30 12:50:46 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-30 12:50:52 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-30 12:50:59 [INFO] Processing SRX2840844. (19/30)
2021-08-30 12:50:59 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-30 12:51:04 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-30 12:51:09 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-30 12:51:16 [INFO] Writing to disk...
2021-08-30 12:51:23 [INFO] Processing SRX2840836. (20/30)
2021-08-30 12:51:23 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-30 12:51:30 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-30 12:51:37 [INFO] Processing SRX2840842. (21/30)
2021-08-30 12:51:37 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-30 12:51:43 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-30 12:51:54 [INFO] Processing SRX2840858. (22/30)
2021-08-30 12:51:54 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-30 12:52:00 [INFO] Processing SRX2840846. (23/30)
2021-08-30 12:52:00 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-30 12:52:03 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-30 12:52:09 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-30 12:52:17 [INFO] Processing SRX2840849. (24/30)
2021-08-30 12:52:17 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-30 12:52:22 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-30 12:52:29 [INFO] Writing to disk...
2021-08-30 12:52:35 [INFO] Processing SRX2840840. (25/30)
2021-08-30 12:52:35 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-30 12:52:43 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-30 12:52:50 [INFO] Processing SRX2840853. (26/30)
2021-08-30 12:52:50 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-30 12:52:56 [INFO] Processing SRX4223390. (27/30)
2021-08-30 12:52:56 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-30 12:53:02 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-30 12:53:09 [INFO] Processing SRX2840838. (28/30)
2021-08-30 12:53:09 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-30 12:53:17 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-30 12:53:29 [INFO] Processing SRX2840837. (29/30)
2021-08-30 12:53:29 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-30 12:53:34 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-30 12:53:41 [INFO] Processing SRX2840852. (30/30)
2021-08-30 12:53:41 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-30 12:53:47 [INFO] Writing to disk...
2021-08-30 12:53:51 [INFO] Finished.
2021-08-30 21:24:51 [INFO] Starting.
2021-08-30 21:24:51 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/
2021-08-30 21:24:51 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP107774/aggregate.hdf5
2021-08-30 21:24:51 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:24:52 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:24:52 [INFO] Writing every 10 Runs.
2021-08-30 21:24:52 [INFO] Processing SRX2840854. (1/30)
2021-08-30 21:24:52 [INFO] Processing SRX2840854-SRR5582823. (1/60)
2021-08-30 21:24:58 [INFO] Processing SRX2840854-SRR5582822. (2/60)
2021-08-30 21:25:03 [INFO] Processing SRX2840841. (2/30)
2021-08-30 21:25:03 [INFO] Processing SRX2840841-SRR5582794. (3/60)
2021-08-30 21:25:08 [INFO] Processing SRX2840841-SRR5582796. (4/60)
2021-08-30 21:25:12 [INFO] Processing SRX2840841-SRR5582795. (5/60)
2021-08-30 21:25:17 [INFO] Processing SRX4223388. (3/30)
2021-08-30 21:25:17 [INFO] Processing SRX4223388-SRR7350065. (6/60)
2021-08-30 21:25:23 [INFO] Processing SRX4223388-SRR7350066. (7/60)
2021-08-30 21:25:30 [INFO] Processing SRX2840848. (4/30)
2021-08-30 21:25:30 [INFO] Processing SRX2840848-SRR5582812. (8/60)
2021-08-30 21:25:34 [INFO] Processing SRX2840848-SRR5582813. (9/60)
2021-08-30 21:25:39 [INFO] Processing SRX2840847. (5/30)
2021-08-30 21:25:39 [INFO] Processing SRX2840847-SRR5582811. (10/60)
2021-08-30 21:25:45 [INFO] Writing to disk...
2021-08-30 21:25:46 [INFO] Processing SRX2840847-SRR5582810. (11/60)
2021-08-30 21:25:51 [INFO] Processing SRX2840857. (6/30)
2021-08-30 21:25:51 [INFO] Processing SRX2840857-SRR5582828. (12/60)
2021-08-30 21:25:56 [INFO] Processing SRX4223389. (7/30)
2021-08-30 21:25:56 [INFO] Processing SRX4223389-SRR7350068. (13/60)
2021-08-30 21:26:01 [INFO] Processing SRX4223389-SRR7350067. (14/60)
2021-08-30 21:26:07 [INFO] Processing SRX2840839. (8/30)
2021-08-30 21:26:07 [INFO] Processing SRX2840839-SRR5582791. (15/60)
2021-08-30 21:26:13 [INFO] Processing SRX2840839-SRR5582790. (16/60)
2021-08-30 21:26:20 [INFO] Processing SRX2840850. (9/30)
2021-08-30 21:26:20 [INFO] Processing SRX2840850-SRR5582816. (17/60)
2021-08-30 21:26:24 [INFO] Processing SRX2840850-SRR5582817. (18/60)
2021-08-30 21:26:28 [INFO] Processing SRX2840835. (10/30)
2021-08-30 21:26:28 [INFO] Processing SRX2840835-SRR5582782. (19/60)
2021-08-30 21:26:35 [INFO] Processing SRX2840835-SRR5582783. (20/60)
2021-08-30 21:26:42 [INFO] Writing to disk...
2021-08-30 21:26:43 [INFO] Processing SRX4223391. (11/30)
2021-08-30 21:26:43 [INFO] Processing SRX4223391-SRR7350071. (21/60)
2021-08-30 21:26:47 [INFO] Processing SRX4223391-SRR7350072. (22/60)
2021-08-30 21:26:53 [INFO] Processing SRX2840843. (12/30)
2021-08-30 21:26:53 [INFO] Processing SRX2840843-SRR5582801. (23/60)
2021-08-30 21:26:59 [INFO] Processing SRX2840843-SRR5582799. (24/60)
2021-08-30 21:27:04 [INFO] Processing SRX2840843-SRR5582800. (25/60)
2021-08-30 21:27:07 [INFO] Processing SRX2840856. (13/30)
2021-08-30 21:27:07 [INFO] Processing SRX2840856-SRR5582826. (26/60)
2021-08-30 21:27:13 [INFO] Processing SRX2840856-SRR5582827. (27/60)
2021-08-30 21:27:19 [INFO] Processing SRX2840845. (14/30)
2021-08-30 21:27:19 [INFO] Processing SRX2840845-SRR5582806. (28/60)
2021-08-30 21:27:26 [INFO] Processing SRX2840845-SRR5582805. (29/60)
2021-08-30 21:27:33 [INFO] Processing SRX2840859. (15/30)
2021-08-30 21:27:33 [INFO] Processing SRX2840859-SRR5582831. (30/60)
2021-08-30 21:27:39 [INFO] Writing to disk...
2021-08-30 21:27:41 [INFO] Processing SRX2840859-SRR5582830. (31/60)
2021-08-30 21:27:46 [INFO] Processing SRX2840855. (16/30)
2021-08-30 21:27:46 [INFO] Processing SRX2840855-SRR5582824. (32/60)
2021-08-30 21:27:52 [INFO] Processing SRX2840855-SRR5582825. (33/60)
2021-08-30 21:27:58 [INFO] Processing SRX2840860. (17/30)
2021-08-30 21:27:58 [INFO] Processing SRX2840860-SRR5582832. (34/60)
2021-08-30 21:28:04 [INFO] Processing SRX2840860-SRR5582833. (35/60)
2021-08-30 21:28:10 [INFO] Processing SRX2840851. (18/30)
2021-08-30 21:28:10 [INFO] Processing SRX2840851-SRR5582819. (36/60)
2021-08-30 21:28:17 [INFO] Processing SRX2840851-SRR5582818. (37/60)
2021-08-30 21:28:23 [INFO] Processing SRX2840844. (19/30)
2021-08-30 21:28:23 [INFO] Processing SRX2840844-SRR5582802. (38/60)
2021-08-30 21:28:27 [INFO] Processing SRX2840844-SRR5582803. (39/60)
2021-08-30 21:28:32 [INFO] Processing SRX2840844-SRR5582804. (40/60)
2021-08-30 21:28:38 [INFO] Writing to disk...
2021-08-30 21:28:46 [INFO] Processing SRX2840836. (20/30)
2021-08-30 21:28:46 [INFO] Processing SRX2840836-SRR5582785. (41/60)
2021-08-30 21:28:52 [INFO] Processing SRX2840836-SRR5582784. (42/60)
2021-08-30 21:28:59 [INFO] Processing SRX2840842. (21/30)
2021-08-30 21:28:59 [INFO] Processing SRX2840842-SRR5582797. (43/60)
2021-08-30 21:29:03 [INFO] Processing SRX2840842-SRR5582798. (44/60)
2021-08-30 21:29:12 [INFO] Processing SRX2840858. (22/30)
2021-08-30 21:29:12 [INFO] Processing SRX2840858-SRR5582829. (45/60)
2021-08-30 21:29:15 [INFO] Processing SRX2840846. (23/30)
2021-08-30 21:29:15 [INFO] Processing SRX2840846-SRR5582808. (46/60)
2021-08-30 21:29:18 [INFO] Processing SRX2840846-SRR5582809. (47/60)
2021-08-30 21:29:23 [INFO] Processing SRX2840846-SRR5582807. (48/60)
2021-08-30 21:29:30 [INFO] Processing SRX2840849. (24/30)
2021-08-30 21:29:30 [INFO] Processing SRX2840849-SRR5582814. (49/60)
2021-08-30 21:29:34 [INFO] Processing SRX2840849-SRR5582815. (50/60)
2021-08-30 21:29:39 [INFO] Writing to disk...
2021-08-30 21:29:42 [INFO] Processing SRX2840840. (25/30)
2021-08-30 21:29:42 [INFO] Processing SRX2840840-SRR5582792. (51/60)
2021-08-30 21:29:48 [INFO] Processing SRX2840840-SRR5582793. (52/60)
2021-08-30 21:29:55 [INFO] Processing SRX2840853. (26/30)
2021-08-30 21:29:55 [INFO] Processing SRX2840853-SRR5582821. (53/60)
2021-08-30 21:30:01 [INFO] Processing SRX4223390. (27/30)
2021-08-30 21:30:01 [INFO] Processing SRX4223390-SRR7350070. (54/60)
2021-08-30 21:30:06 [INFO] Processing SRX4223390-SRR7350069. (55/60)
2021-08-30 21:30:13 [INFO] Processing SRX2840838. (28/30)
2021-08-30 21:30:13 [INFO] Processing SRX2840838-SRR5582788. (56/60)
2021-08-30 21:30:19 [INFO] Processing SRX2840838-SRR5582789. (57/60)
2021-08-30 21:30:26 [INFO] Processing SRX2840837. (29/30)
2021-08-30 21:30:26 [INFO] Processing SRX2840837-SRR5582787. (58/60)
2021-08-30 21:30:33 [INFO] Processing SRX2840837-SRR5582786. (59/60)
2021-08-30 21:30:39 [INFO] Processing SRX2840852. (30/30)
2021-08-30 21:30:39 [INFO] Processing SRX2840852-SRR5582820. (60/60)
2021-08-30 21:30:43 [INFO] Writing to disk...
2021-08-30 21:30:45 [INFO] Finished.