2021-08-02 14:43:30 [INFO] Starting.
2021-08-02 14:43:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-02 14:43:30 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-02 14:43:30 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:30 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX3591098. (1/9)
2021-08-02 14:43:30 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-02 14:43:55 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-02 14:44:25 [INFO] Processing SRX3591095. (2/9)
2021-08-02 14:44:25 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-02 14:44:42 [INFO] Processing SRX4218889. (3/9)
2021-08-02 14:44:42 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-02 14:45:08 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-02 14:45:35 [INFO] Processing SRX4218890. (4/9)
2021-08-02 14:45:35 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-02 14:45:59 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-02 14:46:27 [INFO] Processing SRX4218888. (5/9)
2021-08-02 14:46:27 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-02 14:46:44 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-02 14:47:06 [INFO] Processing SRX3591096. (6/9)
2021-08-02 14:47:06 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-02 14:47:17 [INFO] Writing to disk...
2021-08-02 14:47:36 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-02 14:47:46 [INFO] Processing SRX3591097. (7/9)
2021-08-02 14:47:46 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-02 14:48:06 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-02 14:48:28 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-02 14:48:50 [INFO] Processing SRX4218887. (8/9)
2021-08-02 14:48:50 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-02 14:49:16 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-02 14:49:38 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-02 14:50:03 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-02 14:50:25 [INFO] Processing SRX3591099. (9/9)
2021-08-02 14:50:25 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-02 14:50:49 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-02 14:51:07 [INFO] Writing to disk...
2021-08-02 14:51:27 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-02 14:51:49 [INFO] Writing to disk...
2021-08-02 14:52:11 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:21 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:21 [INFO] Writing every 10 Runs.
2021-08-12 14:31:21 [INFO] Processing SRX3591098. (1/9)
2021-08-12 14:31:21 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-12 14:31:40 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-12 14:32:09 [INFO] Processing SRX3591095. (2/9)
2021-08-12 14:32:09 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-12 14:32:35 [INFO] Processing SRX4218889. (3/9)
2021-08-12 14:32:35 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-12 14:33:02 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-12 14:33:29 [INFO] Processing SRX4218890. (4/9)
2021-08-12 14:33:29 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-12 14:34:00 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-12 14:34:33 [INFO] Processing SRX4218888. (5/9)
2021-08-12 14:34:33 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-12 14:34:51 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-12 14:35:15 [INFO] Processing SRX3591096. (6/9)
2021-08-12 14:35:15 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-12 14:35:27 [INFO] Writing to disk...
2021-08-12 14:35:46 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-12 14:35:59 [INFO] Processing SRX3591097. (7/9)
2021-08-12 14:35:59 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-12 14:36:21 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-12 14:36:45 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-12 14:37:04 [INFO] Processing SRX4218887. (8/9)
2021-08-12 14:37:04 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-12 14:37:25 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-12 14:37:47 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-12 14:38:11 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-12 14:38:33 [INFO] Processing SRX3591099. (9/9)
2021-08-12 14:38:33 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-12 14:38:56 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-12 14:39:12 [INFO] Writing to disk...
2021-08-12 14:39:30 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-12 14:39:51 [INFO] Writing to disk...
2021-08-12 14:40:14 [INFO] Finished.
2021-08-12 16:38:08 [INFO] Starting.
2021-08-12 16:38:08 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-12 16:38:08 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-12 16:38:08 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:38:09 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:38:09 [INFO] Writing every 10 Runs.
2021-08-12 16:38:09 [INFO] Processing SRX3591098. (1/9)
2021-08-12 16:38:09 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-12 16:38:33 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-12 16:39:07 [INFO] Processing SRX3591095. (2/9)
2021-08-12 16:39:07 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-12 16:39:25 [INFO] Processing SRX4218889. (3/9)
2021-08-12 16:39:25 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-12 16:39:52 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-12 16:40:23 [INFO] Processing SRX4218890. (4/9)
2021-08-12 16:40:23 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-12 16:40:55 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-12 16:41:31 [INFO] Processing SRX4218888. (5/9)
2021-08-12 16:41:31 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-12 16:41:53 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-12 16:42:14 [INFO] Processing SRX3591096. (6/9)
2021-08-12 16:42:14 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-12 16:42:25 [INFO] Writing to disk...
2021-08-12 16:42:42 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-12 16:42:53 [INFO] Processing SRX3591097. (7/9)
2021-08-12 16:42:53 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-12 16:43:12 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-12 16:43:32 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-12 16:43:51 [INFO] Processing SRX4218887. (8/9)
2021-08-12 16:43:51 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-12 16:44:09 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-12 16:44:30 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-12 16:44:55 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-12 16:45:16 [INFO] Processing SRX3591099. (9/9)
2021-08-12 16:45:16 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-12 16:45:39 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-12 16:45:54 [INFO] Writing to disk...
2021-08-12 16:46:13 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-12 16:46:37 [INFO] Writing to disk...
2021-08-12 16:47:01 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:55 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:55 [INFO] Writing every 10 Runs.
2021-08-13 09:44:55 [INFO] Processing SRX3591098. (1/9)
2021-08-13 09:44:55 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-13 09:45:16 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-13 09:45:44 [INFO] Processing SRX3591095. (2/9)
2021-08-13 09:45:44 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-13 09:46:00 [INFO] Processing SRX4218889. (3/9)
2021-08-13 09:46:00 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-13 09:46:22 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-13 09:46:42 [INFO] Processing SRX4218890. (4/9)
2021-08-13 09:46:42 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-13 09:47:11 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-13 09:47:36 [INFO] Processing SRX4218888. (5/9)
2021-08-13 09:47:36 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-13 09:47:54 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-13 09:48:16 [INFO] Processing SRX3591096. (6/9)
2021-08-13 09:48:16 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-13 09:48:29 [INFO] Writing to disk...
2021-08-13 09:48:47 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-13 09:49:00 [INFO] Processing SRX3591097. (7/9)
2021-08-13 09:49:00 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-13 09:49:20 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-13 09:49:43 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-13 09:50:07 [INFO] Processing SRX4218887. (8/9)
2021-08-13 09:50:07 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-13 09:50:31 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-13 09:50:54 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-13 09:51:19 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-13 09:51:44 [INFO] Processing SRX3591099. (9/9)
2021-08-13 09:51:44 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-13 09:52:08 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-13 09:52:28 [INFO] Writing to disk...
2021-08-13 09:52:56 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-13 09:53:18 [INFO] Writing to disk...
2021-08-13 09:53:50 [INFO] Finished.
2021-08-13 17:25:50 [INFO] Starting.
2021-08-13 17:25:50 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-13 17:25:50 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-13 17:25:50 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:25:51 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:25:51 [INFO] Writing every 10 Runs.
2021-08-13 17:25:51 [INFO] Processing SRX3591098. (1/9)
2021-08-13 17:25:51 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-13 17:26:24 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-13 17:27:09 [INFO] Processing SRX3591095. (2/9)
2021-08-13 17:27:09 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-13 17:27:39 [INFO] Processing SRX4218889. (3/9)
2021-08-13 17:27:39 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-13 17:28:17 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-13 17:29:03 [INFO] Processing SRX4218890. (4/9)
2021-08-13 17:29:03 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-13 17:29:41 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-13 17:30:26 [INFO] Processing SRX4218888. (5/9)
2021-08-13 17:30:26 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-13 17:30:57 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-13 17:31:34 [INFO] Processing SRX3591096. (6/9)
2021-08-13 17:31:34 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-13 17:31:53 [INFO] Writing to disk...
2021-08-13 17:32:32 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-13 17:32:52 [INFO] Processing SRX3591097. (7/9)
2021-08-13 17:32:52 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-13 17:33:32 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-13 17:34:08 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-13 17:34:48 [INFO] Processing SRX4218887. (8/9)
2021-08-13 17:34:48 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-13 17:35:38 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-13 17:36:17 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-13 17:37:08 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-13 17:37:48 [INFO] Processing SRX3591099. (9/9)
2021-08-13 17:37:48 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-13 17:38:35 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-13 17:39:07 [INFO] Writing to disk...
2021-08-13 17:39:52 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-13 17:40:37 [INFO] Writing to disk...
2021-08-13 17:41:38 [INFO] Finished.
2021-08-16 11:36:45 [INFO] Starting.
2021-08-16 11:36:45 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-16 11:36:45 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-16 11:36:45 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:46 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:46 [INFO] Writing every 10 Runs.
2021-08-16 11:36:46 [INFO] Processing SRX3591098. (1/9)
2021-08-16 11:36:46 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-16 11:39:49 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-16 11:46:09 [INFO] Processing SRX3591095. (2/9)
2021-08-16 11:46:09 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-16 11:52:40 [INFO] Processing SRX4218889. (3/9)
2021-08-16 11:52:40 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-16 11:59:21 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-16 12:05:45 [INFO] Processing SRX4218890. (4/9)
2021-08-16 12:05:45 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-16 12:12:03 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-16 12:18:43 [INFO] Processing SRX4218888. (5/9)
2021-08-16 12:18:43 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-16 12:25:23 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-16 12:32:31 [INFO] Processing SRX3591096. (6/9)
2021-08-16 12:32:31 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-16 12:39:10 [INFO] Writing to disk...
2021-08-16 12:40:22 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-16 12:46:27 [INFO] Processing SRX3591097. (7/9)
2021-08-16 12:46:27 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-16 12:53:03 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-16 12:59:16 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-16 13:05:49 [INFO] Processing SRX4218887. (8/9)
2021-08-16 13:05:49 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-16 13:12:27 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-16 13:19:08 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-16 13:25:44 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-16 13:32:24 [INFO] Processing SRX3591099. (9/9)
2021-08-16 13:32:24 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-16 13:38:54 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-16 13:45:25 [INFO] Writing to disk...
2021-08-16 13:47:10 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-16 13:54:05 [INFO] Writing to disk...
2021-08-16 13:55:46 [INFO] Finished.
2021-08-17 03:01:44 [INFO] Starting.
2021-08-17 03:01:44 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-17 03:01:44 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-17 03:01:44 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-17 03:01:45 [INFO] Building aggregate for 1bp_raw network.
2021-08-17 03:01:45 [INFO] Writing every 10 Runs.
2021-08-17 03:01:45 [INFO] Processing SRX3591098. (1/9)
2021-08-17 03:01:45 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-17 03:04:37 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-17 03:10:32 [INFO] Processing SRX3591095. (2/9)
2021-08-17 03:10:32 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-17 03:16:07 [INFO] Processing SRX4218889. (3/9)
2021-08-17 03:16:07 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-17 03:21:48 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-17 03:27:31 [INFO] Processing SRX4218890. (4/9)
2021-08-17 03:27:32 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-17 03:33:18 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-17 03:39:04 [INFO] Processing SRX4218888. (5/9)
2021-08-17 03:39:04 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-17 03:44:42 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-17 03:50:26 [INFO] Processing SRX3591096. (6/9)
2021-08-17 03:50:26 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-17 03:56:01 [INFO] Writing to disk...
2021-08-17 03:56:52 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-17 04:02:23 [INFO] Processing SRX3591097. (7/9)
2021-08-17 04:02:23 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-17 04:08:06 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-17 04:13:52 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-17 04:19:38 [INFO] Processing SRX4218887. (8/9)
2021-08-17 04:19:38 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-17 04:25:29 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-17 04:31:20 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-17 04:37:15 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-17 04:43:08 [INFO] Processing SRX3591099. (9/9)
2021-08-17 04:43:08 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-17 04:49:05 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-17 04:54:54 [INFO] Writing to disk...
2021-08-17 04:56:08 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-17 05:02:07 [INFO] Writing to disk...
2021-08-17 05:03:26 [INFO] Finished.
2021-08-23 13:34:04 [INFO] Starting.
2021-08-23 13:34:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-23 13:34:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-23 13:34:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:04 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:04 [INFO] Writing every 10 Runs.
2021-08-23 13:34:04 [INFO] Processing SRX3591098. (1/9)
2021-08-23 13:34:04 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-23 13:34:15 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-23 13:34:32 [INFO] Processing SRX3591095. (2/9)
2021-08-23 13:34:32 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-23 13:34:41 [INFO] Processing SRX4218889. (3/9)
2021-08-23 13:34:41 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-23 13:34:59 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-23 13:35:18 [INFO] Processing SRX4218890. (4/9)
2021-08-23 13:35:18 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-23 13:35:36 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-23 13:35:56 [INFO] Processing SRX4218888. (5/9)
2021-08-23 13:35:56 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-23 13:36:09 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-23 13:36:21 [INFO] Processing SRX3591096. (6/9)
2021-08-23 13:36:21 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-23 13:36:28 [INFO] Writing to disk...
2021-08-23 13:36:42 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-23 13:36:49 [INFO] Processing SRX3591097. (7/9)
2021-08-23 13:36:49 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-23 13:37:02 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-23 13:37:15 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-23 13:37:26 [INFO] Processing SRX4218887. (8/9)
2021-08-23 13:37:26 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-23 13:37:43 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-23 13:37:55 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-23 13:38:10 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-23 13:38:19 [INFO] Processing SRX3591099. (9/9)
2021-08-23 13:38:19 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-23 13:38:33 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-23 13:38:44 [INFO] Writing to disk...
2021-08-23 13:38:58 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-23 13:39:09 [INFO] Writing to disk...
2021-08-23 13:39:20 [INFO] Finished.
2021-08-30 12:45:58 [INFO] Starting.
2021-08-30 12:45:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-30 12:45:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-30 12:45:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:58 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:58 [INFO] Writing every 10 Runs.
2021-08-30 12:45:58 [INFO] Processing SRX3591098. (1/9)
2021-08-30 12:45:58 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-30 12:46:07 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-30 12:46:20 [INFO] Processing SRX3591095. (2/9)
2021-08-30 12:46:20 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-30 12:46:26 [INFO] Processing SRX4218889. (3/9)
2021-08-30 12:46:26 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-30 12:46:36 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-30 12:46:48 [INFO] Processing SRX4218890. (4/9)
2021-08-30 12:46:48 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-30 12:47:02 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-30 12:47:13 [INFO] Processing SRX4218888. (5/9)
2021-08-30 12:47:13 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-30 12:47:21 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-30 12:47:31 [INFO] Processing SRX3591096. (6/9)
2021-08-30 12:47:31 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-30 12:47:37 [INFO] Writing to disk...
2021-08-30 12:47:39 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-30 12:47:44 [INFO] Processing SRX3591097. (7/9)
2021-08-30 12:47:44 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-30 12:47:51 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-30 12:48:00 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-30 12:48:07 [INFO] Processing SRX4218887. (8/9)
2021-08-30 12:48:07 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-30 12:48:17 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-30 12:48:26 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-30 12:48:33 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-30 12:48:42 [INFO] Processing SRX3591099. (9/9)
2021-08-30 12:48:42 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-30 12:48:50 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-30 12:48:59 [INFO] Writing to disk...
2021-08-30 12:49:08 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-30 12:49:18 [INFO] Writing to disk...
2021-08-30 12:49:20 [INFO] Finished.
2021-08-30 21:29:30 [INFO] Starting.
2021-08-30 21:29:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/
2021-08-30 21:29:30 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP131117/aggregate.hdf5
2021-08-30 21:29:30 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:29:31 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:29:31 [INFO] Writing every 10 Runs.
2021-08-30 21:29:31 [INFO] Processing SRX3591098. (1/9)
2021-08-30 21:29:31 [INFO] Processing SRX3591098-SRR6502379. (1/21)
2021-08-30 21:29:38 [INFO] Processing SRX3591098-SRR7349197. (2/21)
2021-08-30 21:29:46 [INFO] Processing SRX3591095. (2/9)
2021-08-30 21:29:46 [INFO] Processing SRX3591095-SRR6502373. (3/21)
2021-08-30 21:29:52 [INFO] Processing SRX4218889. (3/9)
2021-08-30 21:29:52 [INFO] Processing SRX4218889-SRR7345474. (4/21)
2021-08-30 21:29:58 [INFO] Processing SRX4218889-SRR7345475. (5/21)
2021-08-30 21:30:04 [INFO] Processing SRX4218890. (4/9)
2021-08-30 21:30:04 [INFO] Processing SRX4218890-SRR7345476. (6/21)
2021-08-30 21:30:14 [INFO] Processing SRX4218890-SRR7345477. (7/21)
2021-08-30 21:30:21 [INFO] Processing SRX4218888. (5/9)
2021-08-30 21:30:21 [INFO] Processing SRX4218888-SRR8824476. (8/21)
2021-08-30 21:30:27 [INFO] Processing SRX4218888-SRR8824475. (9/21)
2021-08-30 21:30:35 [INFO] Processing SRX3591096. (6/9)
2021-08-30 21:30:35 [INFO] Processing SRX3591096-SRR6502375. (10/21)
2021-08-30 21:30:38 [INFO] Writing to disk...
2021-08-30 21:30:39 [INFO] Processing SRX3591096-SRR6502374. (11/21)
2021-08-30 21:30:43 [INFO] Processing SRX3591097. (7/9)
2021-08-30 21:30:43 [INFO] Processing SRX3591097-SRR6502378. (12/21)
2021-08-30 21:30:49 [INFO] Processing SRX3591097-SRR6502376. (13/21)
2021-08-30 21:30:55 [INFO] Processing SRX3591097-SRR6502377. (14/21)
2021-08-30 21:31:02 [INFO] Processing SRX4218887. (8/9)
2021-08-30 21:31:02 [INFO] Processing SRX4218887-SRR7345469. (15/21)
2021-08-30 21:31:08 [INFO] Processing SRX4218887-SRR7345468. (16/21)
2021-08-30 21:31:15 [INFO] Processing SRX4218887-SRR7345470. (17/21)
2021-08-30 21:31:21 [INFO] Processing SRX4218887-SRR7345471. (18/21)
2021-08-30 21:31:27 [INFO] Processing SRX3591099. (9/9)
2021-08-30 21:31:27 [INFO] Processing SRX3591099-SRR6502381. (19/21)
2021-08-30 21:31:33 [INFO] Processing SRX3591099-SRR7349198. (20/21)
2021-08-30 21:31:39 [INFO] Writing to disk...
2021-08-30 21:31:40 [INFO] Processing SRX3591099-SRR6502380. (21/21)
2021-08-30 21:31:46 [INFO] Writing to disk...
2021-08-30 21:31:47 [INFO] Finished.