2021-08-02 14:43:30 [INFO] Starting.
2021-08-02 14:43:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-02 14:43:30 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-02 14:43:30 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:30 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX8628808. (1/28)
2021-08-02 14:43:30 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-02 14:43:33 [INFO] Processing SRX7107309. (2/28)
2021-08-02 14:43:33 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-02 14:43:36 [INFO] Processing SRX7107308. (3/28)
2021-08-02 14:43:36 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-02 14:43:43 [INFO] Processing SRX8628805. (4/28)
2021-08-02 14:43:43 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-02 14:43:50 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-02 14:43:58 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-02 14:44:11 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-02 14:44:27 [INFO] Processing SRX7939700. (5/28)
2021-08-02 14:44:27 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-02 14:44:34 [INFO] Processing SRX8628807. (6/28)
2021-08-02 14:44:34 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-02 14:44:40 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-02 14:44:44 [INFO] Writing to disk...
2021-08-02 14:44:47 [INFO] Processing SRX7107322. (7/28)
2021-08-02 14:44:47 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-02 14:44:59 [INFO] Processing SRX7107323. (8/28)
2021-08-02 14:44:59 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-02 14:45:06 [INFO] Processing SRX7107310. (9/28)
2021-08-02 14:45:06 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-02 14:45:13 [INFO] Processing SRX7107316. (10/28)
2021-08-02 14:45:13 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-02 14:45:21 [INFO] Processing SRX7107318. (11/28)
2021-08-02 14:45:21 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-02 14:45:31 [INFO] Processing SRX8628809. (12/28)
2021-08-02 14:45:31 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-02 14:45:46 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-02 14:46:04 [INFO] Processing SRX7107315. (13/28)
2021-08-02 14:46:04 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-02 14:46:13 [INFO] Processing SRX7107317. (14/28)
2021-08-02 14:46:13 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-02 14:46:19 [INFO] Processing SRX7107314. (15/28)
2021-08-02 14:46:19 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-02 14:46:25 [INFO] Writing to disk...
2021-08-02 14:46:37 [INFO] Processing SRX7107313. (16/28)
2021-08-02 14:46:37 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-02 14:46:43 [INFO] Processing SRX8628806. (17/28)
2021-08-02 14:46:43 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-02 14:46:54 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-02 14:47:02 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-02 14:47:14 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-02 14:47:31 [INFO] Processing SRX7107312. (18/28)
2021-08-02 14:47:31 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-02 14:47:39 [INFO] Processing SRX8628810. (19/28)
2021-08-02 14:47:39 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-02 14:47:55 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-02 14:48:20 [INFO] Processing SRX7107311. (20/28)
2021-08-02 14:48:20 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-02 14:48:27 [INFO] Processing SRX7939698. (21/28)
2021-08-02 14:48:27 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-02 14:48:39 [INFO] Writing to disk...
2021-08-02 14:48:52 [INFO] Processing SRX7939702. (22/28)
2021-08-02 14:48:52 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-02 14:49:01 [INFO] Processing SRX7107325. (23/28)
2021-08-02 14:49:01 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-02 14:49:16 [INFO] Processing SRX7939699. (24/28)
2021-08-02 14:49:16 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-02 14:49:27 [INFO] Processing SRX7939701. (25/28)
2021-08-02 14:49:27 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-02 14:49:35 [INFO] Processing SRX7107319. (26/28)
2021-08-02 14:49:35 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-02 14:49:45 [INFO] Processing SRX7939697. (27/28)
2021-08-02 14:49:45 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-02 14:49:58 [INFO] Processing SRX7107324. (28/28)
2021-08-02 14:49:58 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-02 14:50:14 [INFO] Writing to disk...
2021-08-02 14:50:30 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:21 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:21 [INFO] Writing every 10 Runs.
2021-08-12 14:31:21 [INFO] Processing SRX8628808. (1/28)
2021-08-12 14:31:21 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-12 14:31:25 [INFO] Processing SRX7107309. (2/28)
2021-08-12 14:31:25 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-12 14:31:28 [INFO] Processing SRX7107308. (3/28)
2021-08-12 14:31:28 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-12 14:31:34 [INFO] Processing SRX8628805. (4/28)
2021-08-12 14:31:34 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-12 14:31:41 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-12 14:31:49 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-12 14:32:03 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-12 14:32:21 [INFO] Processing SRX7939700. (5/28)
2021-08-12 14:32:21 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-12 14:32:29 [INFO] Processing SRX8628807. (6/28)
2021-08-12 14:32:29 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-12 14:32:38 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-12 14:32:41 [INFO] Writing to disk...
2021-08-12 14:32:45 [INFO] Processing SRX7107322. (7/28)
2021-08-12 14:32:45 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-12 14:32:53 [INFO] Processing SRX7107323. (8/28)
2021-08-12 14:32:53 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-12 14:33:01 [INFO] Processing SRX7107310. (9/28)
2021-08-12 14:33:01 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-12 14:33:07 [INFO] Processing SRX7107316. (10/28)
2021-08-12 14:33:07 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-12 14:33:14 [INFO] Processing SRX7107318. (11/28)
2021-08-12 14:33:14 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-12 14:33:23 [INFO] Processing SRX8628809. (12/28)
2021-08-12 14:33:23 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-12 14:33:38 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-12 14:34:00 [INFO] Processing SRX7107315. (13/28)
2021-08-12 14:34:00 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-12 14:34:08 [INFO] Processing SRX7107317. (14/28)
2021-08-12 14:34:08 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-12 14:34:14 [INFO] Processing SRX7107314. (15/28)
2021-08-12 14:34:14 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-12 14:34:20 [INFO] Writing to disk...
2021-08-12 14:34:34 [INFO] Processing SRX7107313. (16/28)
2021-08-12 14:34:34 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-12 14:34:39 [INFO] Processing SRX8628806. (17/28)
2021-08-12 14:34:39 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-12 14:34:47 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-12 14:34:55 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-12 14:35:10 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-12 14:35:32 [INFO] Processing SRX7107312. (18/28)
2021-08-12 14:35:32 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-12 14:35:39 [INFO] Processing SRX8628810. (19/28)
2021-08-12 14:35:39 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-12 14:35:59 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-12 14:36:23 [INFO] Processing SRX7107311. (20/28)
2021-08-12 14:36:23 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-12 14:36:28 [INFO] Processing SRX7939698. (21/28)
2021-08-12 14:36:28 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-12 14:36:39 [INFO] Writing to disk...
2021-08-12 14:36:56 [INFO] Processing SRX7939702. (22/28)
2021-08-12 14:36:56 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-12 14:37:02 [INFO] Processing SRX7107325. (23/28)
2021-08-12 14:37:02 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-12 14:37:16 [INFO] Processing SRX7939699. (24/28)
2021-08-12 14:37:16 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-12 14:37:25 [INFO] Processing SRX7939701. (25/28)
2021-08-12 14:37:25 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-12 14:37:34 [INFO] Processing SRX7107319. (26/28)
2021-08-12 14:37:34 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-12 14:37:44 [INFO] Processing SRX7939697. (27/28)
2021-08-12 14:37:44 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-12 14:37:54 [INFO] Processing SRX7107324. (28/28)
2021-08-12 14:37:54 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-12 14:38:05 [INFO] Writing to disk...
2021-08-12 14:38:24 [INFO] Finished.
2021-08-12 16:34:30 [INFO] Starting.
2021-08-12 16:34:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-12 16:34:30 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-12 16:34:30 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:34:30 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:34:30 [INFO] Writing every 10 Runs.
2021-08-12 16:34:30 [INFO] Processing SRX8628808. (1/28)
2021-08-12 16:34:30 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-12 16:34:33 [INFO] Processing SRX7107309. (2/28)
2021-08-12 16:34:33 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-12 16:34:36 [INFO] Processing SRX7107308. (3/28)
2021-08-12 16:34:36 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-12 16:34:42 [INFO] Processing SRX8628805. (4/28)
2021-08-12 16:34:42 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-12 16:34:49 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-12 16:34:57 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-12 16:35:12 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-12 16:35:33 [INFO] Processing SRX7939700. (5/28)
2021-08-12 16:35:33 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-12 16:35:45 [INFO] Processing SRX8628807. (6/28)
2021-08-12 16:35:45 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-12 16:35:52 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-12 16:35:57 [INFO] Writing to disk...
2021-08-12 16:36:00 [INFO] Processing SRX7107322. (7/28)
2021-08-12 16:36:00 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-12 16:36:10 [INFO] Processing SRX7107323. (8/28)
2021-08-12 16:36:10 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-12 16:36:22 [INFO] Processing SRX7107310. (9/28)
2021-08-12 16:36:22 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-12 16:36:28 [INFO] Processing SRX7107316. (10/28)
2021-08-12 16:36:28 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-12 16:36:38 [INFO] Processing SRX7107318. (11/28)
2021-08-12 16:36:38 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-12 16:36:49 [INFO] Processing SRX8628809. (12/28)
2021-08-12 16:36:49 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-12 16:37:06 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-12 16:37:32 [INFO] Processing SRX7107315. (13/28)
2021-08-12 16:37:32 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-12 16:37:42 [INFO] Processing SRX7107317. (14/28)
2021-08-12 16:37:42 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-12 16:37:51 [INFO] Processing SRX7107314. (15/28)
2021-08-12 16:37:51 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-12 16:37:58 [INFO] Writing to disk...
2021-08-12 16:38:13 [INFO] Processing SRX7107313. (16/28)
2021-08-12 16:38:13 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-12 16:38:21 [INFO] Processing SRX8628806. (17/28)
2021-08-12 16:38:21 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-12 16:38:30 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-12 16:38:40 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-12 16:38:59 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-12 16:39:21 [INFO] Processing SRX7107312. (18/28)
2021-08-12 16:39:21 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-12 16:39:28 [INFO] Processing SRX8628810. (19/28)
2021-08-12 16:39:28 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-12 16:39:46 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-12 16:40:11 [INFO] Processing SRX7107311. (20/28)
2021-08-12 16:40:11 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-12 16:40:17 [INFO] Processing SRX7939698. (21/28)
2021-08-12 16:40:17 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-12 16:40:29 [INFO] Writing to disk...
2021-08-12 16:40:49 [INFO] Processing SRX7939702. (22/28)
2021-08-12 16:40:49 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-12 16:40:58 [INFO] Processing SRX7107325. (23/28)
2021-08-12 16:40:58 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-12 16:41:16 [INFO] Processing SRX7939699. (24/28)
2021-08-12 16:41:16 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-12 16:41:27 [INFO] Processing SRX7939701. (25/28)
2021-08-12 16:41:27 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-12 16:41:35 [INFO] Processing SRX7107319. (26/28)
2021-08-12 16:41:35 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-12 16:41:46 [INFO] Processing SRX7939697. (27/28)
2021-08-12 16:41:46 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-12 16:41:58 [INFO] Processing SRX7107324. (28/28)
2021-08-12 16:41:58 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-12 16:42:11 [INFO] Writing to disk...
2021-08-12 16:42:31 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:55 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:55 [INFO] Writing every 10 Runs.
2021-08-13 09:44:55 [INFO] Processing SRX8628808. (1/28)
2021-08-13 09:44:55 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-13 09:44:57 [INFO] Processing SRX7107309. (2/28)
2021-08-13 09:44:57 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-13 09:45:00 [INFO] Processing SRX7107308. (3/28)
2021-08-13 09:45:00 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-13 09:45:07 [INFO] Processing SRX8628805. (4/28)
2021-08-13 09:45:07 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-13 09:45:13 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-13 09:45:21 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-13 09:45:31 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-13 09:45:47 [INFO] Processing SRX7939700. (5/28)
2021-08-13 09:45:47 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-13 09:45:55 [INFO] Processing SRX8628807. (6/28)
2021-08-13 09:45:55 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-13 09:46:01 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-13 09:46:06 [INFO] Writing to disk...
2021-08-13 09:46:09 [INFO] Processing SRX7107322. (7/28)
2021-08-13 09:46:09 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-13 09:46:18 [INFO] Processing SRX7107323. (8/28)
2021-08-13 09:46:18 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-13 09:46:27 [INFO] Processing SRX7107310. (9/28)
2021-08-13 09:46:27 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-13 09:46:34 [INFO] Processing SRX7107316. (10/28)
2021-08-13 09:46:34 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-13 09:46:42 [INFO] Processing SRX7107318. (11/28)
2021-08-13 09:46:42 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-13 09:46:51 [INFO] Processing SRX8628809. (12/28)
2021-08-13 09:46:51 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-13 09:47:06 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-13 09:47:23 [INFO] Processing SRX7107315. (13/28)
2021-08-13 09:47:23 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-13 09:47:30 [INFO] Processing SRX7107317. (14/28)
2021-08-13 09:47:30 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-13 09:47:36 [INFO] Processing SRX7107314. (15/28)
2021-08-13 09:47:36 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-13 09:47:41 [INFO] Writing to disk...
2021-08-13 09:47:54 [INFO] Processing SRX7107313. (16/28)
2021-08-13 09:47:54 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-13 09:47:59 [INFO] Processing SRX8628806. (17/28)
2021-08-13 09:47:59 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-13 09:48:06 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-13 09:48:15 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-13 09:48:28 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-13 09:48:49 [INFO] Processing SRX7107312. (18/28)
2021-08-13 09:48:49 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-13 09:48:57 [INFO] Processing SRX8628810. (19/28)
2021-08-13 09:48:57 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-13 09:49:14 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-13 09:49:36 [INFO] Processing SRX7107311. (20/28)
2021-08-13 09:49:36 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-13 09:49:43 [INFO] Processing SRX7939698. (21/28)
2021-08-13 09:49:43 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-13 09:49:53 [INFO] Writing to disk...
2021-08-13 09:50:11 [INFO] Processing SRX7939702. (22/28)
2021-08-13 09:50:11 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-13 09:50:20 [INFO] Processing SRX7107325. (23/28)
2021-08-13 09:50:20 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-13 09:50:34 [INFO] Processing SRX7939699. (24/28)
2021-08-13 09:50:34 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-13 09:50:44 [INFO] Processing SRX7939701. (25/28)
2021-08-13 09:50:44 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-13 09:50:53 [INFO] Processing SRX7107319. (26/28)
2021-08-13 09:50:53 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-13 09:51:04 [INFO] Processing SRX7939697. (27/28)
2021-08-13 09:51:04 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-13 09:51:16 [INFO] Processing SRX7107324. (28/28)
2021-08-13 09:51:16 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-13 09:51:27 [INFO] Writing to disk...
2021-08-13 09:51:52 [INFO] Finished.
2021-08-13 17:23:01 [INFO] Starting.
2021-08-13 17:23:01 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-13 17:23:01 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-13 17:23:01 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:23:02 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:23:02 [INFO] Writing every 10 Runs.
2021-08-13 17:23:02 [INFO] Processing SRX8628808. (1/28)
2021-08-13 17:23:02 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-13 17:23:06 [INFO] Processing SRX7107309. (2/28)
2021-08-13 17:23:06 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-13 17:23:11 [INFO] Processing SRX7107308. (3/28)
2021-08-13 17:23:11 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-13 17:23:19 [INFO] Processing SRX8628805. (4/28)
2021-08-13 17:23:19 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-13 17:23:29 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-13 17:23:40 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-13 17:24:02 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-13 17:24:33 [INFO] Processing SRX7939700. (5/28)
2021-08-13 17:24:33 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-13 17:24:46 [INFO] Processing SRX8628807. (6/28)
2021-08-13 17:24:46 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-13 17:24:57 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-13 17:25:05 [INFO] Writing to disk...
2021-08-13 17:25:12 [INFO] Processing SRX7107322. (7/28)
2021-08-13 17:25:12 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-13 17:25:27 [INFO] Processing SRX7107323. (8/28)
2021-08-13 17:25:27 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-13 17:25:41 [INFO] Processing SRX7107310. (9/28)
2021-08-13 17:25:41 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-13 17:25:53 [INFO] Processing SRX7107316. (10/28)
2021-08-13 17:25:53 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-13 17:26:08 [INFO] Processing SRX7107318. (11/28)
2021-08-13 17:26:08 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-13 17:26:25 [INFO] Processing SRX8628809. (12/28)
2021-08-13 17:26:25 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-13 17:26:51 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-13 17:27:25 [INFO] Processing SRX7107315. (13/28)
2021-08-13 17:27:25 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-13 17:27:42 [INFO] Processing SRX7107317. (14/28)
2021-08-13 17:27:42 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-13 17:27:54 [INFO] Processing SRX7107314. (15/28)
2021-08-13 17:27:54 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-13 17:28:06 [INFO] Writing to disk...
2021-08-13 17:28:27 [INFO] Processing SRX7107313. (16/28)
2021-08-13 17:28:27 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-13 17:28:40 [INFO] Processing SRX8628806. (17/28)
2021-08-13 17:28:40 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-13 17:28:57 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-13 17:29:16 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-13 17:29:41 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-13 17:30:15 [INFO] Processing SRX7107312. (18/28)
2021-08-13 17:30:15 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-13 17:30:34 [INFO] Processing SRX8628810. (19/28)
2021-08-13 17:30:34 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-13 17:31:03 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-13 17:31:39 [INFO] Processing SRX7107311. (20/28)
2021-08-13 17:31:39 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-13 17:31:52 [INFO] Processing SRX7939698. (21/28)
2021-08-13 17:31:52 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-13 17:32:12 [INFO] Writing to disk...
2021-08-13 17:32:41 [INFO] Processing SRX7939702. (22/28)
2021-08-13 17:32:41 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-13 17:32:59 [INFO] Processing SRX7107325. (23/28)
2021-08-13 17:32:59 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-13 17:33:24 [INFO] Processing SRX7939699. (24/28)
2021-08-13 17:33:24 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-13 17:33:41 [INFO] Processing SRX7939701. (25/28)
2021-08-13 17:33:41 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-13 17:34:00 [INFO] Processing SRX7107319. (26/28)
2021-08-13 17:34:00 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-13 17:34:20 [INFO] Processing SRX7939697. (27/28)
2021-08-13 17:34:20 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-13 17:34:44 [INFO] Processing SRX7107324. (28/28)
2021-08-13 17:34:44 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-13 17:35:09 [INFO] Writing to disk...
2021-08-13 17:35:48 [INFO] Finished.
2021-08-16 11:36:45 [INFO] Starting.
2021-08-16 11:36:46 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-16 11:36:46 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-16 11:36:46 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:46 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:46 [INFO] Writing every 10 Runs.
2021-08-16 11:36:46 [INFO] Processing SRX8628808. (1/28)
2021-08-16 11:36:46 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-16 11:41:20 [INFO] Processing SRX7107309. (2/28)
2021-08-16 11:41:20 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-16 23:30:03 [INFO] Starting.
2021-08-16 23:30:03 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-16 23:30:03 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-16 23:30:03 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 23:30:04 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 23:30:04 [INFO] Writing every 10 Runs.
2021-08-16 23:30:04 [INFO] Processing SRX8628808. (1/28)
2021-08-16 23:30:04 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-16 23:33:06 [INFO] Processing SRX7107309. (2/28)
2021-08-16 23:33:06 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-16 23:39:40 [INFO] Processing SRX7107308. (3/28)
2021-08-16 23:39:40 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-16 23:46:21 [INFO] Processing SRX8628805. (4/28)
2021-08-16 23:46:21 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-16 23:53:00 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-16 23:59:52 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-17 00:06:52 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-17 00:14:00 [INFO] Processing SRX7939700. (5/28)
2021-08-17 00:14:00 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-17 00:20:45 [INFO] Processing SRX8628807. (6/28)
2021-08-17 00:20:45 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-17 00:27:21 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-17 00:33:58 [INFO] Writing to disk...
2021-08-17 00:34:44 [INFO] Processing SRX7107322. (7/28)
2021-08-17 00:34:44 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-17 00:40:39 [INFO] Processing SRX7107323. (8/28)
2021-08-17 00:40:39 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-17 00:46:27 [INFO] Processing SRX7107310. (9/28)
2021-08-17 00:46:27 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-17 00:52:02 [INFO] Processing SRX7107316. (10/28)
2021-08-17 00:52:02 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-17 00:57:30 [INFO] Processing SRX7107318. (11/28)
2021-08-17 00:57:30 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-17 01:02:59 [INFO] Processing SRX8628809. (12/28)
2021-08-17 01:02:59 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-17 01:08:32 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-17 01:14:13 [INFO] Processing SRX7107315. (13/28)
2021-08-17 01:14:13 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-17 01:19:46 [INFO] Processing SRX7107317. (14/28)
2021-08-17 01:19:46 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-17 01:25:15 [INFO] Processing SRX7107314. (15/28)
2021-08-17 01:25:15 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-17 01:30:44 [INFO] Writing to disk...
2021-08-17 01:31:34 [INFO] Processing SRX7107313. (16/28)
2021-08-17 01:31:34 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-17 01:37:04 [INFO] Processing SRX8628806. (17/28)
2021-08-17 01:37:04 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-17 01:42:34 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-17 01:48:04 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-17 01:53:43 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-17 01:59:26 [INFO] Processing SRX7107312. (18/28)
2021-08-17 01:59:26 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-17 02:05:04 [INFO] Processing SRX8628810. (19/28)
2021-08-17 02:05:04 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-17 02:10:42 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-17 02:16:33 [INFO] Processing SRX7107311. (20/28)
2021-08-17 02:16:33 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-17 02:22:11 [INFO] Processing SRX7939698. (21/28)
2021-08-17 02:22:11 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-17 02:27:51 [INFO] Writing to disk...
2021-08-17 02:28:53 [INFO] Processing SRX7939702. (22/28)
2021-08-17 02:28:53 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-17 02:34:31 [INFO] Processing SRX7107325. (23/28)
2021-08-17 02:34:31 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-17 02:40:15 [INFO] Processing SRX7939699. (24/28)
2021-08-17 02:40:15 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-17 02:45:55 [INFO] Processing SRX7939701. (25/28)
2021-08-17 02:45:55 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-17 02:51:35 [INFO] Processing SRX7107319. (26/28)
2021-08-17 02:51:35 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-17 02:57:16 [INFO] Processing SRX7939697. (27/28)
2021-08-17 02:57:16 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-17 03:02:56 [INFO] Processing SRX7107324. (28/28)
2021-08-17 03:02:56 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-17 03:08:35 [INFO] Writing to disk...
2021-08-17 03:09:45 [INFO] Finished.
2021-08-23 13:34:04 [INFO] Starting.
2021-08-23 13:34:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-23 13:34:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-23 13:34:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:04 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:04 [INFO] Writing every 10 Runs.
2021-08-23 13:34:04 [INFO] Processing SRX8628808. (1/28)
2021-08-23 13:34:04 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-23 13:34:07 [INFO] Processing SRX7107309. (2/28)
2021-08-23 13:34:07 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-23 13:34:09 [INFO] Processing SRX7107308. (3/28)
2021-08-23 13:34:09 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-23 13:34:14 [INFO] Processing SRX8628805. (4/28)
2021-08-23 13:34:14 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-23 13:34:18 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-23 13:34:23 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-23 13:34:32 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-23 13:34:43 [INFO] Processing SRX7939700. (5/28)
2021-08-23 13:34:43 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-23 13:34:48 [INFO] Processing SRX8628807. (6/28)
2021-08-23 13:34:48 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-23 13:34:52 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-23 13:34:55 [INFO] Writing to disk...
2021-08-23 13:34:57 [INFO] Processing SRX7107322. (7/28)
2021-08-23 13:34:57 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-23 13:35:04 [INFO] Processing SRX7107323. (8/28)
2021-08-23 13:35:04 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-23 13:35:11 [INFO] Processing SRX7107310. (9/28)
2021-08-23 13:35:11 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-23 13:35:15 [INFO] Processing SRX7107316. (10/28)
2021-08-23 13:35:15 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-23 13:35:20 [INFO] Processing SRX7107318. (11/28)
2021-08-23 13:35:20 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-23 13:35:26 [INFO] Processing SRX8628809. (12/28)
2021-08-23 13:35:26 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-23 13:35:39 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-23 13:35:50 [INFO] Processing SRX7107315. (13/28)
2021-08-23 13:35:50 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-23 13:35:56 [INFO] Processing SRX7107317. (14/28)
2021-08-23 13:35:56 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-23 13:36:00 [INFO] Processing SRX7107314. (15/28)
2021-08-23 13:36:00 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-23 13:36:03 [INFO] Writing to disk...
2021-08-23 13:36:14 [INFO] Processing SRX7107313. (16/28)
2021-08-23 13:36:14 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-23 13:36:16 [INFO] Processing SRX8628806. (17/28)
2021-08-23 13:36:16 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-23 13:36:23 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-23 13:36:29 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-23 13:36:40 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-23 13:36:53 [INFO] Processing SRX7107312. (18/28)
2021-08-23 13:36:53 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-23 13:36:58 [INFO] Processing SRX8628810. (19/28)
2021-08-23 13:36:58 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-23 13:37:11 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-23 13:37:26 [INFO] Processing SRX7107311. (20/28)
2021-08-23 13:37:26 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-23 13:37:29 [INFO] Processing SRX7939698. (21/28)
2021-08-23 13:37:29 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-23 13:37:36 [INFO] Writing to disk...
2021-08-23 13:37:51 [INFO] Processing SRX7939702. (22/28)
2021-08-23 13:37:51 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-23 13:37:56 [INFO] Processing SRX7107325. (23/28)
2021-08-23 13:37:56 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-23 13:38:07 [INFO] Processing SRX7939699. (24/28)
2021-08-23 13:38:07 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-23 13:38:13 [INFO] Processing SRX7939701. (25/28)
2021-08-23 13:38:13 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-23 13:38:19 [INFO] Processing SRX7107319. (26/28)
2021-08-23 13:38:19 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-23 13:38:26 [INFO] Processing SRX7939697. (27/28)
2021-08-23 13:38:26 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-23 13:38:34 [INFO] Processing SRX7107324. (28/28)
2021-08-23 13:38:34 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-23 13:38:42 [INFO] Writing to disk...
2021-08-23 13:38:58 [INFO] Finished.
2021-08-30 12:45:57 [INFO] Starting.
2021-08-30 12:45:57 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-30 12:45:57 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-30 12:45:57 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:58 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:58 [INFO] Writing every 10 Runs.
2021-08-30 12:45:58 [INFO] Processing SRX8628808. (1/28)
2021-08-30 12:45:58 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-30 12:46:00 [INFO] Processing SRX7107309. (2/28)
2021-08-30 12:46:00 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-30 12:46:01 [INFO] Processing SRX7107308. (3/28)
2021-08-30 12:46:01 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-30 12:46:04 [INFO] Processing SRX8628805. (4/28)
2021-08-30 12:46:04 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-30 12:46:08 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-30 12:46:12 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-30 12:46:19 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-30 12:46:25 [INFO] Processing SRX7939700. (5/28)
2021-08-30 12:46:25 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-30 12:46:28 [INFO] Processing SRX8628807. (6/28)
2021-08-30 12:46:28 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-30 12:46:31 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-30 12:46:33 [INFO] Writing to disk...
2021-08-30 12:46:34 [INFO] Processing SRX7107322. (7/28)
2021-08-30 12:46:34 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-30 12:46:40 [INFO] Processing SRX7107323. (8/28)
2021-08-30 12:46:40 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-30 12:46:44 [INFO] Processing SRX7107310. (9/28)
2021-08-30 12:46:44 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-30 12:46:47 [INFO] Processing SRX7107316. (10/28)
2021-08-30 12:46:47 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-30 12:46:51 [INFO] Processing SRX7107318. (11/28)
2021-08-30 12:46:51 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-30 12:46:54 [INFO] Processing SRX8628809. (12/28)
2021-08-30 12:46:54 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-30 12:47:01 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-30 12:47:10 [INFO] Processing SRX7107315. (13/28)
2021-08-30 12:47:10 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-30 12:47:14 [INFO] Processing SRX7107317. (14/28)
2021-08-30 12:47:14 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-30 12:47:17 [INFO] Processing SRX7107314. (15/28)
2021-08-30 12:47:17 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-30 12:47:20 [INFO] Writing to disk...
2021-08-30 12:47:22 [INFO] Processing SRX7107313. (16/28)
2021-08-30 12:47:22 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-30 12:47:25 [INFO] Processing SRX8628806. (17/28)
2021-08-30 12:47:25 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-30 12:47:29 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-30 12:47:33 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-30 12:47:39 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-30 12:47:46 [INFO] Processing SRX7107312. (18/28)
2021-08-30 12:47:46 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-30 12:47:50 [INFO] Processing SRX8628810. (19/28)
2021-08-30 12:47:50 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-30 12:47:56 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-30 12:48:03 [INFO] Processing SRX7107311. (20/28)
2021-08-30 12:48:03 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-30 12:48:06 [INFO] Processing SRX7939698. (21/28)
2021-08-30 12:48:06 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-30 12:48:11 [INFO] Writing to disk...
2021-08-30 12:48:16 [INFO] Processing SRX7939702. (22/28)
2021-08-30 12:48:16 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-30 12:48:20 [INFO] Processing SRX7107325. (23/28)
2021-08-30 12:48:20 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-30 12:48:25 [INFO] Processing SRX7939699. (24/28)
2021-08-30 12:48:25 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-30 12:48:29 [INFO] Processing SRX7939701. (25/28)
2021-08-30 12:48:29 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-30 12:48:34 [INFO] Processing SRX7107319. (26/28)
2021-08-30 12:48:34 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-30 12:48:38 [INFO] Processing SRX7939697. (27/28)
2021-08-30 12:48:38 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-30 12:48:43 [INFO] Processing SRX7107324. (28/28)
2021-08-30 12:48:43 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-30 12:48:49 [INFO] Writing to disk...
2021-08-30 12:48:52 [INFO] Finished.
2021-08-30 21:27:29 [INFO] Starting.
2021-08-30 21:27:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/
2021-08-30 21:27:29 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP227097/aggregate.hdf5
2021-08-30 21:27:29 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:27:30 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:27:30 [INFO] Writing every 10 Runs.
2021-08-30 21:27:30 [INFO] Processing SRX8628808. (1/28)
2021-08-30 21:27:30 [INFO] Processing SRX8628808-SRR12104644. (1/37)
2021-08-30 21:27:31 [INFO] Processing SRX7107309. (2/28)
2021-08-30 21:27:31 [INFO] Processing SRX7107309-SRR10409091. (2/37)
2021-08-30 21:27:33 [INFO] Processing SRX7107308. (3/28)
2021-08-30 21:27:33 [INFO] Processing SRX7107308-SRR10409090. (3/37)
2021-08-30 21:27:35 [INFO] Processing SRX8628805. (4/28)
2021-08-30 21:27:35 [INFO] Processing SRX8628805-SRR12104637. (4/37)
2021-08-30 21:27:39 [INFO] Processing SRX8628805-SRR12104636. (5/37)
2021-08-30 21:27:42 [INFO] Processing SRX8628805-SRR12104635. (6/37)
2021-08-30 21:27:46 [INFO] Processing SRX8628805-SRR12104634. (7/37)
2021-08-30 21:27:53 [INFO] Processing SRX7939700. (5/28)
2021-08-30 21:27:53 [INFO] Processing SRX7939700-SRR11336152. (8/37)
2021-08-30 21:27:56 [INFO] Processing SRX8628807. (6/28)
2021-08-30 21:27:56 [INFO] Processing SRX8628807-SRR12104642. (9/37)
2021-08-30 21:27:58 [INFO] Processing SRX8628807-SRR12104643. (10/37)
2021-08-30 21:27:59 [INFO] Writing to disk...
2021-08-30 21:28:01 [INFO] Processing SRX7107322. (7/28)
2021-08-30 21:28:01 [INFO] Processing SRX7107322-SRR10409104. (11/37)
2021-08-30 21:28:05 [INFO] Processing SRX7107323. (8/28)
2021-08-30 21:28:05 [INFO] Processing SRX7107323-SRR10409105. (12/37)
2021-08-30 21:28:08 [INFO] Processing SRX7107310. (9/28)
2021-08-30 21:28:08 [INFO] Processing SRX7107310-SRR10409092. (13/37)
2021-08-30 21:28:11 [INFO] Processing SRX7107316. (10/28)
2021-08-30 21:28:11 [INFO] Processing SRX7107316-SRR10409098. (14/37)
2021-08-30 21:28:14 [INFO] Processing SRX7107318. (11/28)
2021-08-30 21:28:14 [INFO] Processing SRX7107318-SRR10409100. (15/37)
2021-08-30 21:28:18 [INFO] Processing SRX8628809. (12/28)
2021-08-30 21:28:18 [INFO] Processing SRX8628809-SRR12104646. (16/37)
2021-08-30 21:28:24 [INFO] Processing SRX8628809-SRR12104645. (17/37)
2021-08-30 21:28:30 [INFO] Processing SRX7107315. (13/28)
2021-08-30 21:28:30 [INFO] Processing SRX7107315-SRR10409097. (18/37)
2021-08-30 21:28:33 [INFO] Processing SRX7107317. (14/28)
2021-08-30 21:28:33 [INFO] Processing SRX7107317-SRR10409099. (19/37)
2021-08-30 21:28:36 [INFO] Processing SRX7107314. (15/28)
2021-08-30 21:28:36 [INFO] Processing SRX7107314-SRR10409096. (20/37)
2021-08-30 21:28:38 [INFO] Writing to disk...
2021-08-30 21:28:39 [INFO] Processing SRX7107313. (16/28)
2021-08-30 21:28:39 [INFO] Processing SRX7107313-SRR10409095. (21/37)
2021-08-30 21:28:41 [INFO] Processing SRX8628806. (17/28)
2021-08-30 21:28:41 [INFO] Processing SRX8628806-SRR12104640. (22/37)
2021-08-30 21:28:45 [INFO] Processing SRX8628806-SRR12104641. (23/37)
2021-08-30 21:28:48 [INFO] Processing SRX8628806-SRR12104639. (24/37)
2021-08-30 21:28:53 [INFO] Processing SRX8628806-SRR12104638. (25/37)
2021-08-30 21:28:59 [INFO] Processing SRX7107312. (18/28)
2021-08-30 21:28:59 [INFO] Processing SRX7107312-SRR10409094. (26/37)
2021-08-30 21:29:02 [INFO] Processing SRX8628810. (19/28)
2021-08-30 21:29:02 [INFO] Processing SRX8628810-SRR12104648. (27/37)
2021-08-30 21:29:07 [INFO] Processing SRX8628810-SRR12104647. (28/37)
2021-08-30 21:29:13 [INFO] Processing SRX7107311. (20/28)
2021-08-30 21:29:13 [INFO] Processing SRX7107311-SRR10409093. (29/37)
2021-08-30 21:29:15 [INFO] Processing SRX7939698. (21/28)
2021-08-30 21:29:15 [INFO] Processing SRX7939698-SRR11336150. (30/37)
2021-08-30 21:29:19 [INFO] Writing to disk...
2021-08-30 21:29:28 [INFO] Processing SRX7939702. (22/28)
2021-08-30 21:29:28 [INFO] Processing SRX7939702-SRR11336154. (31/37)
2021-08-30 21:29:31 [INFO] Processing SRX7107325. (23/28)
2021-08-30 21:29:31 [INFO] Processing SRX7107325-SRR10409107. (32/37)
2021-08-30 21:29:36 [INFO] Processing SRX7939699. (24/28)
2021-08-30 21:29:36 [INFO] Processing SRX7939699-SRR11336151. (33/37)
2021-08-30 21:29:39 [INFO] Processing SRX7939701. (25/28)
2021-08-30 21:29:39 [INFO] Processing SRX7939701-SRR11336153. (34/37)
2021-08-30 21:29:42 [INFO] Processing SRX7107319. (26/28)
2021-08-30 21:29:42 [INFO] Processing SRX7107319-SRR10409101. (35/37)
2021-08-30 21:29:46 [INFO] Processing SRX7939697. (27/28)
2021-08-30 21:29:46 [INFO] Processing SRX7939697-SRR11336149. (36/37)
2021-08-30 21:29:50 [INFO] Processing SRX7107324. (28/28)
2021-08-30 21:29:50 [INFO] Processing SRX7107324-SRR10409106. (37/37)
2021-08-30 21:29:54 [INFO] Writing to disk...
2021-08-30 21:29:57 [INFO] Finished.