2021-08-02 14:43:29 [INFO] Starting.
2021-08-02 14:43:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-02 14:43:29 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-02 14:43:29 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:29 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX8074904. (1/13)
2021-08-02 14:43:30 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-02 14:43:36 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-02 14:43:51 [INFO] Processing SRX8074911. (2/13)
2021-08-02 14:43:51 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-02 14:44:11 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-02 14:44:18 [INFO] Processing SRX8074916. (3/13)
2021-08-02 14:44:18 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-02 14:44:29 [INFO] Processing SRX8074914. (4/13)
2021-08-02 14:44:29 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-02 14:44:38 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-02 14:44:59 [INFO] Processing SRX8074908. (5/13)
2021-08-02 14:44:59 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-02 14:45:17 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-02 14:45:24 [INFO] Processing SRX8074912. (6/13)
2021-08-02 14:45:24 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-02 14:45:47 [INFO] Writing to disk...
2021-08-02 14:45:57 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-02 14:46:03 [INFO] Processing SRX8074909. (7/13)
2021-08-02 14:46:03 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-02 14:46:11 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-02 14:46:33 [INFO] Processing SRX8074907. (8/13)
2021-08-02 14:46:33 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-02 14:46:50 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-02 14:46:59 [INFO] Processing SRX8074915. (9/13)
2021-08-02 14:46:59 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-02 14:47:12 [INFO] Processing SRX8074910. (10/13)
2021-08-02 14:47:12 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-02 14:47:21 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-02 14:47:40 [INFO] Processing SRX8074906. (11/13)
2021-08-02 14:47:40 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-02 14:47:56 [INFO] Processing SRX8074913. (12/13)
2021-08-02 14:47:56 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-02 14:48:06 [INFO] Writing to disk...
2021-08-02 14:48:22 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-02 14:48:44 [INFO] Processing SRX8074905. (13/13)
2021-08-02 14:48:44 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-02 14:49:00 [INFO] Writing to disk...
2021-08-02 14:49:20 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:22 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:22 [INFO] Writing every 10 Runs.
2021-08-12 14:31:22 [INFO] Processing SRX8074904. (1/13)
2021-08-12 14:31:22 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-12 14:31:29 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-12 14:31:49 [INFO] Processing SRX8074911. (2/13)
2021-08-12 14:31:49 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-12 14:32:12 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-12 14:32:20 [INFO] Processing SRX8074916. (3/13)
2021-08-12 14:32:20 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-12 14:32:31 [INFO] Processing SRX8074914. (4/13)
2021-08-12 14:32:31 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-12 14:32:40 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-12 14:33:01 [INFO] Processing SRX8074908. (5/13)
2021-08-12 14:33:01 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-12 14:33:19 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-12 14:33:26 [INFO] Processing SRX8074912. (6/13)
2021-08-12 14:33:26 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-12 14:33:48 [INFO] Writing to disk...
2021-08-12 14:33:58 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-12 14:34:05 [INFO] Processing SRX8074909. (7/13)
2021-08-12 14:34:05 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-12 14:34:13 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-12 14:34:33 [INFO] Processing SRX8074907. (8/13)
2021-08-12 14:34:33 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-12 14:34:51 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-12 14:35:00 [INFO] Processing SRX8074915. (9/13)
2021-08-12 14:35:00 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-12 14:35:13 [INFO] Processing SRX8074910. (10/13)
2021-08-12 14:35:13 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-12 14:35:21 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-12 14:35:44 [INFO] Processing SRX8074906. (11/13)
2021-08-12 14:35:44 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-12 14:36:02 [INFO] Processing SRX8074913. (12/13)
2021-08-12 14:36:02 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-12 14:36:11 [INFO] Writing to disk...
2021-08-12 14:36:29 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-12 14:36:48 [INFO] Processing SRX8074905. (13/13)
2021-08-12 14:36:48 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-12 14:37:02 [INFO] Writing to disk...
2021-08-12 14:37:20 [INFO] Finished.
2021-08-12 16:37:43 [INFO] Starting.
2021-08-12 16:37:43 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-12 16:37:43 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-12 16:37:43 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:37:44 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:37:44 [INFO] Writing every 10 Runs.
2021-08-12 16:37:44 [INFO] Processing SRX8074904. (1/13)
2021-08-12 16:37:44 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-12 16:37:53 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-12 16:38:14 [INFO] Processing SRX8074911. (2/13)
2021-08-12 16:38:14 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-12 16:38:45 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-12 16:38:53 [INFO] Processing SRX8074916. (3/13)
2021-08-12 16:38:53 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-12 16:39:07 [INFO] Processing SRX8074914. (4/13)
2021-08-12 16:39:07 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-12 16:39:18 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-12 16:39:44 [INFO] Processing SRX8074908. (5/13)
2021-08-12 16:39:44 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-12 16:40:05 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-12 16:40:15 [INFO] Processing SRX8074912. (6/13)
2021-08-12 16:40:15 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-12 16:40:42 [INFO] Writing to disk...
2021-08-12 16:40:56 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-12 16:41:04 [INFO] Processing SRX8074909. (7/13)
2021-08-12 16:41:04 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-12 16:41:14 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-12 16:41:41 [INFO] Processing SRX8074907. (8/13)
2021-08-12 16:41:41 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-12 16:42:04 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-12 16:42:13 [INFO] Processing SRX8074915. (9/13)
2021-08-12 16:42:13 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-12 16:42:26 [INFO] Processing SRX8074910. (10/13)
2021-08-12 16:42:26 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-12 16:42:36 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-12 16:42:59 [INFO] Processing SRX8074906. (11/13)
2021-08-12 16:42:59 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-12 16:43:22 [INFO] Processing SRX8074913. (12/13)
2021-08-12 16:43:22 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-12 16:43:32 [INFO] Writing to disk...
2021-08-12 16:43:48 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-12 16:44:07 [INFO] Processing SRX8074905. (13/13)
2021-08-12 16:44:07 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-12 16:44:24 [INFO] Writing to disk...
2021-08-12 16:44:43 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:55 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:55 [INFO] Writing every 10 Runs.
2021-08-13 09:44:55 [INFO] Processing SRX8074904. (1/13)
2021-08-13 09:44:55 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-13 09:45:01 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-13 09:45:18 [INFO] Processing SRX8074911. (2/13)
2021-08-13 09:45:18 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-13 09:45:35 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-13 09:45:42 [INFO] Processing SRX8074916. (3/13)
2021-08-13 09:45:42 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-13 09:45:53 [INFO] Processing SRX8074914. (4/13)
2021-08-13 09:45:53 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-13 09:46:02 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-13 09:46:19 [INFO] Processing SRX8074908. (5/13)
2021-08-13 09:46:19 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-13 09:46:37 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-13 09:46:46 [INFO] Processing SRX8074912. (6/13)
2021-08-13 09:46:46 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-13 09:47:06 [INFO] Writing to disk...
2021-08-13 09:47:18 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-13 09:47:25 [INFO] Processing SRX8074909. (7/13)
2021-08-13 09:47:25 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-13 09:47:33 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-13 09:47:53 [INFO] Processing SRX8074907. (8/13)
2021-08-13 09:47:53 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-13 09:48:11 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-13 09:48:20 [INFO] Processing SRX8074915. (9/13)
2021-08-13 09:48:20 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-13 09:48:33 [INFO] Processing SRX8074910. (10/13)
2021-08-13 09:48:33 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-13 09:48:41 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-13 09:49:01 [INFO] Processing SRX8074906. (11/13)
2021-08-13 09:49:01 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-13 09:49:19 [INFO] Processing SRX8074913. (12/13)
2021-08-13 09:49:19 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-13 09:49:28 [INFO] Writing to disk...
2021-08-13 09:49:47 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-13 09:50:05 [INFO] Processing SRX8074905. (13/13)
2021-08-13 09:50:05 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-13 09:50:21 [INFO] Writing to disk...
2021-08-13 09:50:45 [INFO] Finished.
2021-08-13 17:25:14 [INFO] Starting.
2021-08-13 17:25:14 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-13 17:25:14 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-13 17:25:14 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:25:15 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:25:15 [INFO] Writing every 10 Runs.
2021-08-13 17:25:15 [INFO] Processing SRX8074904. (1/13)
2021-08-13 17:25:15 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-13 17:25:24 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-13 17:25:50 [INFO] Processing SRX8074911. (2/13)
2021-08-13 17:25:50 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-13 17:26:20 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-13 17:26:31 [INFO] Processing SRX8074916. (3/13)
2021-08-13 17:26:31 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-13 17:26:50 [INFO] Processing SRX8074914. (4/13)
2021-08-13 17:26:50 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-13 17:27:04 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-13 17:27:36 [INFO] Processing SRX8074908. (5/13)
2021-08-13 17:27:36 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-13 17:28:06 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-13 17:28:18 [INFO] Processing SRX8074912. (6/13)
2021-08-13 17:28:18 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-13 17:28:51 [INFO] Writing to disk...
2021-08-13 17:29:16 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-13 17:29:28 [INFO] Processing SRX8074909. (7/13)
2021-08-13 17:29:28 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-13 17:29:41 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-13 17:30:16 [INFO] Processing SRX8074907. (8/13)
2021-08-13 17:30:16 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-13 17:30:49 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-13 17:31:04 [INFO] Processing SRX8074915. (9/13)
2021-08-13 17:31:04 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-13 17:31:28 [INFO] Processing SRX8074910. (10/13)
2021-08-13 17:31:28 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-13 17:31:43 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-13 17:32:14 [INFO] Processing SRX8074906. (11/13)
2021-08-13 17:32:14 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-13 17:32:48 [INFO] Processing SRX8074913. (12/13)
2021-08-13 17:32:48 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-13 17:33:06 [INFO] Writing to disk...
2021-08-13 17:33:34 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-13 17:34:05 [INFO] Processing SRX8074905. (13/13)
2021-08-13 17:34:05 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-13 17:34:30 [INFO] Writing to disk...
2021-08-13 17:35:15 [INFO] Finished.
2021-08-16 11:36:46 [INFO] Starting.
2021-08-16 11:36:46 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-16 11:36:46 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-16 11:36:46 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:46 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:46 [INFO] Writing every 10 Runs.
2021-08-16 11:36:46 [INFO] Processing SRX8074904. (1/13)
2021-08-16 11:36:46 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-16 11:43:54 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-17 01:56:30 [INFO] Starting.
2021-08-17 01:56:30 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-17 01:56:30 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-17 01:56:30 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-17 01:56:31 [INFO] Building aggregate for 1bp_raw network.
2021-08-17 01:56:31 [INFO] Writing every 10 Runs.
2021-08-17 01:56:31 [INFO] Processing SRX8074904. (1/13)
2021-08-17 01:56:31 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-17 02:00:14 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-17 02:07:10 [INFO] Processing SRX8074911. (2/13)
2021-08-17 02:07:10 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-17 02:14:22 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-17 02:21:20 [INFO] Processing SRX8074916. (3/13)
2021-08-17 02:21:20 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-17 02:28:19 [INFO] Processing SRX8074914. (4/13)
2021-08-17 02:28:19 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-17 02:35:16 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-17 02:42:28 [INFO] Processing SRX8074908. (5/13)
2021-08-17 02:42:28 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-17 02:49:46 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-17 02:56:38 [INFO] Processing SRX8074912. (6/13)
2021-08-17 02:56:38 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-17 03:03:53 [INFO] Writing to disk...
2021-08-17 03:05:03 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-17 03:12:08 [INFO] Processing SRX8074909. (7/13)
2021-08-17 03:12:08 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-17 03:19:04 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-17 03:26:19 [INFO] Processing SRX8074907. (8/13)
2021-08-17 03:26:19 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-17 03:33:31 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-17 03:40:34 [INFO] Processing SRX8074915. (9/13)
2021-08-17 03:40:34 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-17 03:47:37 [INFO] Processing SRX8074910. (10/13)
2021-08-17 03:47:37 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-17 03:54:39 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-17 04:01:59 [INFO] Processing SRX8074906. (11/13)
2021-08-17 04:01:59 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-17 04:09:21 [INFO] Processing SRX8074913. (12/13)
2021-08-17 04:09:21 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-17 04:16:41 [INFO] Writing to disk...
2021-08-17 04:18:15 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-17 04:25:37 [INFO] Processing SRX8074905. (13/13)
2021-08-17 04:25:37 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-17 04:32:44 [INFO] Writing to disk...
2021-08-17 04:34:20 [INFO] Finished.
2021-08-23 13:34:04 [INFO] Starting.
2021-08-23 13:34:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-23 13:34:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-23 13:34:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:05 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:05 [INFO] Writing every 10 Runs.
2021-08-23 13:34:05 [INFO] Processing SRX8074904. (1/13)
2021-08-23 13:34:05 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-23 13:34:09 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-23 13:34:19 [INFO] Processing SRX8074911. (2/13)
2021-08-23 13:34:19 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-23 13:34:37 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-23 13:34:42 [INFO] Processing SRX8074916. (3/13)
2021-08-23 13:34:42 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-23 13:34:51 [INFO] Processing SRX8074914. (4/13)
2021-08-23 13:34:51 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-23 13:34:57 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-23 13:35:16 [INFO] Processing SRX8074908. (5/13)
2021-08-23 13:35:16 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-23 13:35:29 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-23 13:35:34 [INFO] Processing SRX8074912. (6/13)
2021-08-23 13:35:34 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-23 13:35:51 [INFO] Writing to disk...
2021-08-23 13:36:00 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-23 13:36:05 [INFO] Processing SRX8074909. (7/13)
2021-08-23 13:36:05 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-23 13:36:10 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-23 13:36:25 [INFO] Processing SRX8074907. (8/13)
2021-08-23 13:36:25 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-23 13:36:38 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-23 13:36:43 [INFO] Processing SRX8074915. (9/13)
2021-08-23 13:36:43 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-23 13:36:52 [INFO] Processing SRX8074910. (10/13)
2021-08-23 13:36:52 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-23 13:36:57 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-23 13:37:11 [INFO] Processing SRX8074906. (11/13)
2021-08-23 13:37:11 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-23 13:37:26 [INFO] Processing SRX8074913. (12/13)
2021-08-23 13:37:26 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-23 13:37:32 [INFO] Writing to disk...
2021-08-23 13:37:46 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-23 13:37:59 [INFO] Processing SRX8074905. (13/13)
2021-08-23 13:37:59 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-23 13:38:10 [INFO] Writing to disk...
2021-08-23 13:38:26 [INFO] Finished.
2021-08-30 12:45:58 [INFO] Starting.
2021-08-30 12:45:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-30 12:45:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-30 12:45:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:58 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:58 [INFO] Writing every 10 Runs.
2021-08-30 12:45:58 [INFO] Processing SRX8074904. (1/13)
2021-08-30 12:45:58 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-30 12:46:02 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-30 12:46:09 [INFO] Processing SRX8074911. (2/13)
2021-08-30 12:46:09 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-30 12:46:19 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-30 12:46:24 [INFO] Processing SRX8074916. (3/13)
2021-08-30 12:46:24 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-30 12:46:30 [INFO] Processing SRX8074914. (4/13)
2021-08-30 12:46:30 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-30 12:46:36 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-30 12:46:44 [INFO] Processing SRX8074908. (5/13)
2021-08-30 12:46:44 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-30 12:46:51 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-30 12:46:54 [INFO] Processing SRX8074912. (6/13)
2021-08-30 12:46:54 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-30 12:47:04 [INFO] Writing to disk...
2021-08-30 12:47:06 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-30 12:47:11 [INFO] Processing SRX8074909. (7/13)
2021-08-30 12:47:11 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-30 12:47:16 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-30 12:47:24 [INFO] Processing SRX8074907. (8/13)
2021-08-30 12:47:24 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-30 12:47:33 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-30 12:47:37 [INFO] Processing SRX8074915. (9/13)
2021-08-30 12:47:37 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-30 12:47:43 [INFO] Processing SRX8074910. (10/13)
2021-08-30 12:47:43 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-30 12:47:47 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-30 12:47:56 [INFO] Processing SRX8074906. (11/13)
2021-08-30 12:47:56 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-30 12:48:04 [INFO] Processing SRX8074913. (12/13)
2021-08-30 12:48:04 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-30 12:48:09 [INFO] Writing to disk...
2021-08-30 12:48:18 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-30 12:48:27 [INFO] Processing SRX8074905. (13/13)
2021-08-30 12:48:27 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-30 12:48:36 [INFO] Writing to disk...
2021-08-30 12:48:38 [INFO] Finished.
2021-08-30 21:28:31 [INFO] Starting.
2021-08-30 21:28:31 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/
2021-08-30 21:28:31 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP255620/aggregate.hdf5
2021-08-30 21:28:31 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:28:32 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:28:32 [INFO] Writing every 10 Runs.
2021-08-30 21:28:32 [INFO] Processing SRX8074904. (1/13)
2021-08-30 21:28:32 [INFO] Processing SRX8074904-SRR11499078. (1/22)
2021-08-30 21:28:35 [INFO] Processing SRX8074904-SRR11499077. (2/22)
2021-08-30 21:28:41 [INFO] Processing SRX8074911. (2/13)
2021-08-30 21:28:41 [INFO] Processing SRX8074911-SRR11499089. (3/22)
2021-08-30 21:28:49 [INFO] Processing SRX8074911-SRR11499090. (4/22)
2021-08-30 21:28:52 [INFO] Processing SRX8074916. (3/13)
2021-08-30 21:28:52 [INFO] Processing SRX8074916-SRR11499098. (5/22)
2021-08-30 21:28:56 [INFO] Processing SRX8074914. (4/13)
2021-08-30 21:28:56 [INFO] Processing SRX8074914-SRR11499096. (6/22)
2021-08-30 21:29:00 [INFO] Processing SRX8074914-SRR11499095. (7/22)
2021-08-30 21:29:06 [INFO] Processing SRX8074908. (5/13)
2021-08-30 21:29:06 [INFO] Processing SRX8074908-SRR11499083. (8/22)
2021-08-30 21:29:13 [INFO] Processing SRX8074908-SRR11499084. (9/22)
2021-08-30 21:29:16 [INFO] Processing SRX8074912. (6/13)
2021-08-30 21:29:16 [INFO] Processing SRX8074912-SRR11499091. (10/22)
2021-08-30 21:29:22 [INFO] Writing to disk...
2021-08-30 21:29:23 [INFO] Processing SRX8074912-SRR11499092. (11/22)
2021-08-30 21:29:26 [INFO] Processing SRX8074909. (7/13)
2021-08-30 21:29:26 [INFO] Processing SRX8074909-SRR11499086. (12/22)
2021-08-30 21:29:29 [INFO] Processing SRX8074909-SRR11499085. (13/22)
2021-08-30 21:29:35 [INFO] Processing SRX8074907. (8/13)
2021-08-30 21:29:35 [INFO] Processing SRX8074907-SRR11499081. (14/22)
2021-08-30 21:29:40 [INFO] Processing SRX8074907-SRR11499082. (15/22)
2021-08-30 21:29:44 [INFO] Processing SRX8074915. (9/13)
2021-08-30 21:29:44 [INFO] Processing SRX8074915-SRR11499097. (16/22)
2021-08-30 21:29:48 [INFO] Processing SRX8074910. (10/13)
2021-08-30 21:29:48 [INFO] Processing SRX8074910-SRR11499088. (17/22)
2021-08-30 21:29:52 [INFO] Processing SRX8074910-SRR11499087. (18/22)
2021-08-30 21:29:59 [INFO] Processing SRX8074906. (11/13)
2021-08-30 21:29:59 [INFO] Processing SRX8074906-SRR11499080. (19/22)
2021-08-30 21:30:05 [INFO] Processing SRX8074913. (12/13)
2021-08-30 21:30:05 [INFO] Processing SRX8074913-SRR11499094. (20/22)
2021-08-30 21:30:09 [INFO] Writing to disk...
2021-08-30 21:30:12 [INFO] Processing SRX8074913-SRR11499093. (21/22)
2021-08-30 21:30:18 [INFO] Processing SRX8074905. (13/13)
2021-08-30 21:30:18 [INFO] Processing SRX8074905-SRR11499079. (22/22)
2021-08-30 21:30:24 [INFO] Writing to disk...
2021-08-30 21:30:25 [INFO] Finished.