2021-08-02 14:43:29 [INFO] Starting.
2021-08-02 14:43:29 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-02 14:43:29 [INFO] Creating new aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-02 14:43:29 [INFO] Using chromosome sizes at /grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes
2021-08-02 14:43:29 [INFO] Using only main chromosomes: chr1, chr2, chrX, chr3, chr4, chr5, chr6, chr7, chr10, chr8, chr14, chr9, chr11, chr13, chr12, chr15, chr16, chr17, chrY, chr18, chr19, chrM
2021-08-02 14:43:30 [INFO] Building aggregate.
2021-08-02 14:43:30 [INFO] Writing every 10 Runs.
2021-08-02 14:43:30 [INFO] Processing SRX8590529. (1/19)
2021-08-02 14:43:30 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-02 14:43:44 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-02 14:44:02 [INFO] Processing SRX8590527. (2/19)
2021-08-02 14:44:02 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-02 14:44:05 [INFO] Processing SRX8590521. (3/19)
2021-08-02 14:44:05 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-02 14:44:20 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-02 14:44:33 [INFO] Processing SRX8590520. (4/19)
2021-08-02 14:44:33 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-02 14:44:40 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-02 14:44:46 [INFO] Processing SRX8590519. (5/19)
2021-08-02 14:44:46 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-02 14:44:56 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-02 14:45:02 [INFO] Processing SRX8590517. (6/19)
2021-08-02 14:45:02 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-02 14:45:11 [INFO] Writing to disk...
2021-08-02 14:45:15 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-02 14:45:22 [INFO] Processing SRX8590522. (7/19)
2021-08-02 14:45:22 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-02 14:45:34 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-02 14:45:47 [INFO] Processing SRX8590524. (8/19)
2021-08-02 14:45:47 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-02 14:46:01 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-02 14:46:16 [INFO] Processing SRX8590523. (9/19)
2021-08-02 14:46:16 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-02 14:46:31 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-02 14:46:46 [INFO] Processing SRX8590525. (10/19)
2021-08-02 14:46:46 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-02 14:47:03 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-02 14:47:22 [INFO] Processing SRX8590526. (11/19)
2021-08-02 14:47:22 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-02 14:47:34 [INFO] Writing to disk...
2021-08-02 14:47:45 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-02 14:47:57 [INFO] Processing SRX8590511. (12/19)
2021-08-02 14:47:57 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-02 14:48:08 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-02 14:48:20 [INFO] Processing SRX8590512. (13/19)
2021-08-02 14:48:20 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-02 14:48:28 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-02 14:48:37 [INFO] Processing SRX8590514. (14/19)
2021-08-02 14:48:37 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-02 14:48:50 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-02 14:49:03 [INFO] Processing SRX8590528. (15/19)
2021-08-02 14:49:03 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-02 14:49:21 [INFO] Processing SRX8590513. (16/19)
2021-08-02 14:49:21 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-02 14:49:35 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-02 14:49:48 [INFO] Writing to disk...
2021-08-02 14:50:03 [INFO] Processing SRX8590515. (17/19)
2021-08-02 14:50:03 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-02 14:50:17 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-02 14:50:30 [INFO] Processing SRX8590516. (18/19)
2021-08-02 14:50:30 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-02 14:50:44 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-02 14:50:58 [INFO] Processing SRX8590518. (19/19)
2021-08-02 14:50:58 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-02 14:51:08 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-02 14:51:18 [INFO] Writing to disk...
2021-08-02 14:51:34 [INFO] Finished.
2021-08-12 14:31:21 [INFO] Starting.
2021-08-12 14:31:21 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-12 14:31:21 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-12 14:31:21 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 14:31:21 [INFO] Building aggregate for 40kbp_raw network.
2021-08-12 14:31:21 [INFO] Writing every 10 Runs.
2021-08-12 14:31:21 [INFO] Processing SRX8590529. (1/19)
2021-08-12 14:31:21 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-12 14:31:39 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-12 14:31:57 [INFO] Processing SRX8590527. (2/19)
2021-08-12 14:31:57 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-12 14:32:01 [INFO] Processing SRX8590521. (3/19)
2021-08-12 14:32:01 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-12 14:32:14 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-12 14:32:29 [INFO] Processing SRX8590520. (4/19)
2021-08-12 14:32:29 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-12 14:32:38 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-12 14:32:44 [INFO] Processing SRX8590519. (5/19)
2021-08-12 14:32:44 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-12 14:32:51 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-12 14:32:58 [INFO] Processing SRX8590517. (6/19)
2021-08-12 14:32:58 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-12 14:33:06 [INFO] Writing to disk...
2021-08-12 14:33:09 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-12 14:33:19 [INFO] Processing SRX8590522. (7/19)
2021-08-12 14:33:19 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-12 14:33:32 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-12 14:33:46 [INFO] Processing SRX8590524. (8/19)
2021-08-12 14:33:46 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-12 14:34:02 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-12 14:34:17 [INFO] Processing SRX8590523. (9/19)
2021-08-12 14:34:17 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-12 14:34:35 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-12 14:34:50 [INFO] Processing SRX8590525. (10/19)
2021-08-12 14:34:50 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-12 14:35:10 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-12 14:35:30 [INFO] Processing SRX8590526. (11/19)
2021-08-12 14:35:30 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-12 14:35:43 [INFO] Writing to disk...
2021-08-12 14:35:57 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-12 14:36:11 [INFO] Processing SRX8590511. (12/19)
2021-08-12 14:36:11 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-12 14:36:22 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-12 14:36:32 [INFO] Processing SRX8590512. (13/19)
2021-08-12 14:36:32 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-12 14:36:39 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-12 14:36:46 [INFO] Processing SRX8590514. (14/19)
2021-08-12 14:36:46 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-12 14:36:57 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-12 14:37:10 [INFO] Processing SRX8590528. (15/19)
2021-08-12 14:37:10 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-12 14:37:27 [INFO] Processing SRX8590513. (16/19)
2021-08-12 14:37:27 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-12 14:37:40 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-12 14:37:54 [INFO] Writing to disk...
2021-08-12 14:38:09 [INFO] Processing SRX8590515. (17/19)
2021-08-12 14:38:09 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-12 14:38:23 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-12 14:38:37 [INFO] Processing SRX8590516. (18/19)
2021-08-12 14:38:37 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-12 14:38:49 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-12 14:39:01 [INFO] Processing SRX8590518. (19/19)
2021-08-12 14:39:01 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-12 14:39:09 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-12 14:39:17 [INFO] Writing to disk...
2021-08-12 14:39:33 [INFO] Finished.
2021-08-12 16:35:44 [INFO] Starting.
2021-08-12 16:35:44 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-12 16:35:44 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-12 16:35:44 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-12 16:35:46 [INFO] Building aggregate for 25kbp_raw network.
2021-08-12 16:35:46 [INFO] Writing every 10 Runs.
2021-08-12 16:35:46 [INFO] Processing SRX8590529. (1/19)
2021-08-12 16:35:46 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-12 16:36:06 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-12 16:36:30 [INFO] Processing SRX8590527. (2/19)
2021-08-12 16:36:30 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-12 16:36:34 [INFO] Processing SRX8590521. (3/19)
2021-08-12 16:36:34 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-12 16:36:51 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-12 16:37:08 [INFO] Processing SRX8590520. (4/19)
2021-08-12 16:37:08 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-12 16:37:16 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-12 16:37:25 [INFO] Processing SRX8590519. (5/19)
2021-08-12 16:37:25 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-12 16:37:34 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-12 16:37:43 [INFO] Processing SRX8590517. (6/19)
2021-08-12 16:37:43 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-12 16:37:54 [INFO] Writing to disk...
2021-08-12 16:37:58 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-12 16:38:10 [INFO] Processing SRX8590522. (7/19)
2021-08-12 16:38:10 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-12 16:38:25 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-12 16:38:41 [INFO] Processing SRX8590524. (8/19)
2021-08-12 16:38:41 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-12 16:38:58 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-12 16:39:15 [INFO] Processing SRX8590523. (9/19)
2021-08-12 16:39:15 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-12 16:39:32 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-12 16:39:49 [INFO] Processing SRX8590525. (10/19)
2021-08-12 16:39:49 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-12 16:40:10 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-12 16:40:31 [INFO] Processing SRX8590526. (11/19)
2021-08-12 16:40:31 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-12 16:40:47 [INFO] Writing to disk...
2021-08-12 16:41:03 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-12 16:41:18 [INFO] Processing SRX8590511. (12/19)
2021-08-12 16:41:18 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-12 16:41:30 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-12 16:41:42 [INFO] Processing SRX8590512. (13/19)
2021-08-12 16:41:42 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-12 16:41:51 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-12 16:41:59 [INFO] Processing SRX8590514. (14/19)
2021-08-12 16:41:59 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-12 16:42:13 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-12 16:42:28 [INFO] Processing SRX8590528. (15/19)
2021-08-12 16:42:28 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-12 16:42:52 [INFO] Processing SRX8590513. (16/19)
2021-08-12 16:42:52 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-12 16:43:06 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-12 16:43:20 [INFO] Writing to disk...
2021-08-12 16:43:37 [INFO] Processing SRX8590515. (17/19)
2021-08-12 16:43:37 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-12 16:43:51 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-12 16:44:06 [INFO] Processing SRX8590516. (18/19)
2021-08-12 16:44:06 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-12 16:44:18 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-12 16:44:30 [INFO] Processing SRX8590518. (19/19)
2021-08-12 16:44:30 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-12 16:44:40 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-12 16:44:50 [INFO] Writing to disk...
2021-08-12 16:45:10 [INFO] Finished.
2021-08-13 09:44:54 [INFO] Starting.
2021-08-13 09:44:54 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-13 09:44:54 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-13 09:44:54 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 09:44:54 [INFO] Building aggregate for 5kbp_raw network.
2021-08-13 09:44:54 [INFO] Writing every 10 Runs.
2021-08-13 09:44:54 [INFO] Processing SRX8590529. (1/19)
2021-08-13 09:44:54 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-13 09:45:05 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-13 09:45:22 [INFO] Processing SRX8590527. (2/19)
2021-08-13 09:45:22 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-13 09:45:27 [INFO] Processing SRX8590521. (3/19)
2021-08-13 09:45:27 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-13 09:45:38 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-13 09:45:51 [INFO] Processing SRX8590520. (4/19)
2021-08-13 09:45:51 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-13 09:45:57 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-13 09:46:04 [INFO] Processing SRX8590519. (5/19)
2021-08-13 09:46:04 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-13 09:46:11 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-13 09:46:19 [INFO] Processing SRX8590517. (6/19)
2021-08-13 09:46:19 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-13 09:46:27 [INFO] Writing to disk...
2021-08-13 09:46:32 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-13 09:46:42 [INFO] Processing SRX8590522. (7/19)
2021-08-13 09:46:42 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-13 09:46:56 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-13 09:47:09 [INFO] Processing SRX8590524. (8/19)
2021-08-13 09:47:09 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-13 09:47:23 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-13 09:47:36 [INFO] Processing SRX8590523. (9/19)
2021-08-13 09:47:36 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-13 09:47:52 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-13 09:48:07 [INFO] Processing SRX8590525. (10/19)
2021-08-13 09:48:07 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-13 09:48:26 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-13 09:48:45 [INFO] Processing SRX8590526. (11/19)
2021-08-13 09:48:45 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-13 09:48:59 [INFO] Writing to disk...
2021-08-13 09:49:16 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-13 09:49:28 [INFO] Processing SRX8590511. (12/19)
2021-08-13 09:49:28 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-13 09:49:40 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-13 09:49:51 [INFO] Processing SRX8590512. (13/19)
2021-08-13 09:49:51 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-13 09:50:00 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-13 09:50:09 [INFO] Processing SRX8590514. (14/19)
2021-08-13 09:50:09 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-13 09:50:24 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-13 09:50:37 [INFO] Processing SRX8590528. (15/19)
2021-08-13 09:50:37 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-13 09:50:56 [INFO] Processing SRX8590513. (16/19)
2021-08-13 09:50:56 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-13 09:51:12 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-13 09:51:27 [INFO] Writing to disk...
2021-08-13 09:51:50 [INFO] Processing SRX8590515. (17/19)
2021-08-13 09:51:50 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-13 09:52:05 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-13 09:52:20 [INFO] Processing SRX8590516. (18/19)
2021-08-13 09:52:20 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-13 09:52:34 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-13 09:52:49 [INFO] Processing SRX8590518. (19/19)
2021-08-13 09:52:49 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-13 09:52:59 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-13 09:53:11 [INFO] Writing to disk...
2021-08-13 09:53:33 [INFO] Finished.
2021-08-13 17:24:15 [INFO] Starting.
2021-08-13 17:24:15 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-13 17:24:15 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-13 17:24:15 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-13 17:24:15 [INFO] Building aggregate for 1kbp_raw network.
2021-08-13 17:24:15 [INFO] Writing every 10 Runs.
2021-08-13 17:24:15 [INFO] Processing SRX8590529. (1/19)
2021-08-13 17:24:15 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-13 17:24:37 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-13 17:25:01 [INFO] Processing SRX8590527. (2/19)
2021-08-13 17:25:01 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-13 17:25:08 [INFO] Processing SRX8590521. (3/19)
2021-08-13 17:25:08 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-13 17:25:30 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-13 17:25:51 [INFO] Processing SRX8590520. (4/19)
2021-08-13 17:25:51 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-13 17:26:04 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-13 17:26:15 [INFO] Processing SRX8590519. (5/19)
2021-08-13 17:26:15 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-13 17:26:28 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-13 17:26:42 [INFO] Processing SRX8590517. (6/19)
2021-08-13 17:26:42 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-13 17:26:56 [INFO] Writing to disk...
2021-08-13 17:27:03 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-13 17:27:17 [INFO] Processing SRX8590522. (7/19)
2021-08-13 17:27:17 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-13 17:27:40 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-13 17:28:02 [INFO] Processing SRX8590524. (8/19)
2021-08-13 17:28:02 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-13 17:28:29 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-13 17:28:55 [INFO] Processing SRX8590523. (9/19)
2021-08-13 17:28:55 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-13 17:29:22 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-13 17:29:48 [INFO] Processing SRX8590525. (10/19)
2021-08-13 17:29:48 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-13 17:30:18 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-13 17:30:49 [INFO] Processing SRX8590526. (11/19)
2021-08-13 17:30:49 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-13 17:31:12 [INFO] Writing to disk...
2021-08-13 17:31:36 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-13 17:31:56 [INFO] Processing SRX8590511. (12/19)
2021-08-13 17:31:56 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-13 17:32:17 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-13 17:32:40 [INFO] Processing SRX8590512. (13/19)
2021-08-13 17:32:40 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-13 17:32:55 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-13 17:33:13 [INFO] Processing SRX8590514. (14/19)
2021-08-13 17:33:13 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-13 17:33:35 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-13 17:34:00 [INFO] Processing SRX8590528. (15/19)
2021-08-13 17:34:00 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-13 17:34:33 [INFO] Processing SRX8590513. (16/19)
2021-08-13 17:34:33 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-13 17:35:01 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-13 17:35:33 [INFO] Writing to disk...
2021-08-13 17:36:05 [INFO] Processing SRX8590515. (17/19)
2021-08-13 17:36:05 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-13 17:36:33 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-13 17:36:58 [INFO] Processing SRX8590516. (18/19)
2021-08-13 17:36:58 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-13 17:37:22 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-13 17:37:50 [INFO] Processing SRX8590518. (19/19)
2021-08-13 17:37:50 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-13 17:38:12 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-13 17:38:34 [INFO] Writing to disk...
2021-08-13 17:39:10 [INFO] Finished.
2021-08-16 11:36:46 [INFO] Starting.
2021-08-16 11:36:46 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-16 11:36:46 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-16 11:36:46 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 11:36:47 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 11:36:47 [INFO] Writing every 10 Runs.
2021-08-16 11:36:47 [INFO] Processing SRX8590529. (1/19)
2021-08-16 11:36:47 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-16 11:45:55 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-16 11:55:06 [INFO] Processing SRX8590527. (2/19)
2021-08-16 11:55:06 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-16 12:01:16 [INFO] Processing SRX8590521. (3/19)
2021-08-16 12:01:16 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-16 12:13:16 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-16 12:23:57 [INFO] Processing SRX8590520. (4/19)
2021-08-16 12:23:57 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-16 12:34:28 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-16 12:43:48 [INFO] Processing SRX8590519. (5/19)
2021-08-16 12:43:48 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-16 12:53:47 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-16 13:00:01 [INFO] Processing SRX8590517. (6/19)
2021-08-16 13:00:01 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-16 13:07:50 [INFO] Writing to disk...
2021-08-16 13:09:04 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-16 13:17:48 [INFO] Processing SRX8590522. (7/19)
2021-08-16 13:17:48 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-16 13:27:36 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-16 13:37:10 [INFO] Processing SRX8590524. (8/19)
2021-08-16 13:37:10 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-16 13:48:14 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-16 13:57:50 [INFO] Processing SRX8590523. (9/19)
2021-08-16 13:57:50 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-16 14:04:21 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-16 14:10:49 [INFO] Processing SRX8590525. (10/19)
2021-08-16 14:10:49 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-16 14:17:00 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-16 14:24:02 [INFO] Processing SRX8590526. (11/19)
2021-08-16 14:24:02 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-16 14:30:29 [INFO] Writing to disk...
2021-08-16 14:31:44 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-16 14:37:42 [INFO] Processing SRX8590511. (12/19)
2021-08-16 14:37:42 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-16 14:44:20 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-16 14:51:15 [INFO] Processing SRX8590512. (13/19)
2021-08-16 14:51:15 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-16 14:58:01 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-16 15:04:08 [INFO] Processing SRX8590514. (14/19)
2021-08-16 15:04:08 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-16 15:10:06 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-16 15:16:13 [INFO] Processing SRX8590528. (15/19)
2021-08-16 15:16:13 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-16 15:22:18 [INFO] Processing SRX8590513. (16/19)
2021-08-16 15:22:18 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-16 15:28:35 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-16 15:34:59 [INFO] Writing to disk...
2021-08-16 15:36:19 [INFO] Processing SRX8590515. (17/19)
2021-08-16 15:36:19 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-16 15:42:10 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-16 15:48:19 [INFO] Processing SRX8590516. (18/19)
2021-08-16 15:48:19 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-16 15:54:48 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-16 16:01:10 [INFO] Processing SRX8590518. (19/19)
2021-08-16 16:01:10 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-16 16:07:18 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-16 16:13:26 [INFO] Writing to disk...
2021-08-16 16:15:01 [INFO] Finished.
2021-08-16 23:50:38 [INFO] Starting.
2021-08-16 23:50:38 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-16 23:50:38 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-16 23:50:38 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-16 23:50:39 [INFO] Building aggregate for 1bp_raw network.
2021-08-16 23:50:39 [INFO] Writing every 10 Runs.
2021-08-16 23:50:39 [INFO] Processing SRX8590529. (1/19)
2021-08-16 23:50:39 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-16 23:54:23 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-17 00:01:31 [INFO] Processing SRX8590527. (2/19)
2021-08-17 00:01:31 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-17 00:08:29 [INFO] Processing SRX8590521. (3/19)
2021-08-17 00:08:29 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-17 00:15:46 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-17 00:23:01 [INFO] Processing SRX8590520. (4/19)
2021-08-17 00:23:01 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-17 00:30:12 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-17 00:37:18 [INFO] Processing SRX8590519. (5/19)
2021-08-17 00:37:18 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-17 00:44:28 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-17 00:51:37 [INFO] Processing SRX8590517. (6/19)
2021-08-17 00:51:37 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-17 00:58:40 [INFO] Writing to disk...
2021-08-17 00:59:36 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-17 01:06:38 [INFO] Processing SRX8590522. (7/19)
2021-08-17 01:06:38 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-17 01:13:49 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-17 01:21:02 [INFO] Processing SRX8590524. (8/19)
2021-08-17 01:21:02 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-17 01:28:16 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-17 01:35:29 [INFO] Processing SRX8590523. (9/19)
2021-08-17 01:35:29 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-17 01:42:48 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-17 01:50:07 [INFO] Processing SRX8590525. (10/19)
2021-08-17 01:50:07 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-17 01:57:30 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-17 02:04:53 [INFO] Processing SRX8590526. (11/19)
2021-08-17 02:04:53 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-17 02:12:17 [INFO] Writing to disk...
2021-08-17 02:13:31 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-17 02:20:48 [INFO] Processing SRX8590511. (12/19)
2021-08-17 02:20:48 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-17 02:28:04 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-17 02:35:21 [INFO] Processing SRX8590512. (13/19)
2021-08-17 02:35:21 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-17 02:42:36 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-17 02:49:50 [INFO] Processing SRX8590514. (14/19)
2021-08-17 02:49:50 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-17 02:57:08 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-17 03:04:28 [INFO] Processing SRX8590528. (15/19)
2021-08-17 03:04:28 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-17 03:11:54 [INFO] Processing SRX8590513. (16/19)
2021-08-17 03:11:54 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-17 03:19:15 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-17 03:26:37 [INFO] Writing to disk...
2021-08-17 03:28:02 [INFO] Processing SRX8590515. (17/19)
2021-08-17 03:28:02 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-17 03:35:22 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-17 03:42:44 [INFO] Processing SRX8590516. (18/19)
2021-08-17 03:42:44 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-17 03:50:07 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-17 03:57:33 [INFO] Processing SRX8590518. (19/19)
2021-08-17 03:57:33 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-17 04:04:54 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-17 04:12:23 [INFO] Writing to disk...
2021-08-17 04:13:56 [INFO] Finished.
2021-08-23 13:34:04 [INFO] Starting.
2021-08-23 13:34:04 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-23 13:34:04 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-23 13:34:04 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-23 13:34:05 [INFO] Building aggregate for 100kbp_raw network.
2021-08-23 13:34:05 [INFO] Writing every 10 Runs.
2021-08-23 13:34:05 [INFO] Processing SRX8590529. (1/19)
2021-08-23 13:34:05 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-23 13:34:15 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-23 13:34:26 [INFO] Processing SRX8590527. (2/19)
2021-08-23 13:34:26 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-23 13:34:29 [INFO] Processing SRX8590521. (3/19)
2021-08-23 13:34:29 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-23 13:34:38 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-23 13:34:46 [INFO] Processing SRX8590520. (4/19)
2021-08-23 13:34:46 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-23 13:34:51 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-23 13:34:54 [INFO] Processing SRX8590519. (5/19)
2021-08-23 13:34:54 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-23 13:35:00 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-23 13:35:05 [INFO] Processing SRX8590517. (6/19)
2021-08-23 13:35:05 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-23 13:35:10 [INFO] Writing to disk...
2021-08-23 13:35:12 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-23 13:35:18 [INFO] Processing SRX8590522. (7/19)
2021-08-23 13:35:18 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-23 13:35:27 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-23 13:35:37 [INFO] Processing SRX8590524. (8/19)
2021-08-23 13:35:37 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-23 13:35:45 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-23 13:35:55 [INFO] Processing SRX8590523. (9/19)
2021-08-23 13:35:55 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-23 13:36:03 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-23 13:36:11 [INFO] Processing SRX8590525. (10/19)
2021-08-23 13:36:11 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-23 13:36:22 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-23 13:36:36 [INFO] Processing SRX8590526. (11/19)
2021-08-23 13:36:36 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-23 13:36:44 [INFO] Writing to disk...
2021-08-23 13:36:54 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-23 13:37:03 [INFO] Processing SRX8590511. (12/19)
2021-08-23 13:37:03 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-23 13:37:10 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-23 13:37:16 [INFO] Processing SRX8590512. (13/19)
2021-08-23 13:37:16 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-23 13:37:20 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-23 13:37:25 [INFO] Processing SRX8590514. (14/19)
2021-08-23 13:37:25 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-23 13:37:34 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-23 13:37:43 [INFO] Processing SRX8590528. (15/19)
2021-08-23 13:37:43 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-23 13:37:56 [INFO] Processing SRX8590513. (16/19)
2021-08-23 13:37:56 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-23 13:38:04 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-23 13:38:11 [INFO] Writing to disk...
2021-08-23 13:38:22 [INFO] Processing SRX8590515. (17/19)
2021-08-23 13:38:22 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-23 13:38:32 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-23 13:38:41 [INFO] Processing SRX8590516. (18/19)
2021-08-23 13:38:41 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-23 13:38:51 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-23 13:39:00 [INFO] Processing SRX8590518. (19/19)
2021-08-23 13:39:00 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-23 13:39:05 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-23 13:39:11 [INFO] Writing to disk...
2021-08-23 13:39:21 [INFO] Finished.
2021-08-30 12:45:58 [INFO] Starting.
2021-08-30 12:45:58 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-30 12:45:58 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-30 12:45:58 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 12:45:58 [INFO] Building aggregate for 250kbp_raw network.
2021-08-30 12:45:58 [INFO] Writing every 10 Runs.
2021-08-30 12:45:58 [INFO] Processing SRX8590529. (1/19)
2021-08-30 12:45:58 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-30 12:46:06 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-30 12:46:15 [INFO] Processing SRX8590527. (2/19)
2021-08-30 12:46:15 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-30 12:46:18 [INFO] Processing SRX8590521. (3/19)
2021-08-30 12:46:18 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-30 12:46:22 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-30 12:46:28 [INFO] Processing SRX8590520. (4/19)
2021-08-30 12:46:28 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-30 12:46:32 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-30 12:46:36 [INFO] Processing SRX8590519. (5/19)
2021-08-30 12:46:36 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-30 12:46:40 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-30 12:46:43 [INFO] Processing SRX8590517. (6/19)
2021-08-30 12:46:43 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-30 12:46:47 [INFO] Writing to disk...
2021-08-30 12:46:48 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-30 12:46:52 [INFO] Processing SRX8590522. (7/19)
2021-08-30 12:46:52 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-30 12:46:57 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-30 12:47:05 [INFO] Processing SRX8590524. (8/19)
2021-08-30 12:47:05 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-30 12:47:10 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-30 12:47:16 [INFO] Processing SRX8590523. (9/19)
2021-08-30 12:47:16 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-30 12:47:24 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-30 12:47:32 [INFO] Processing SRX8590525. (10/19)
2021-08-30 12:47:32 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-30 12:47:40 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-30 12:47:46 [INFO] Processing SRX8590526. (11/19)
2021-08-30 12:47:46 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-30 12:47:52 [INFO] Writing to disk...
2021-08-30 12:48:00 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-30 12:48:06 [INFO] Processing SRX8590511. (12/19)
2021-08-30 12:48:06 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-30 12:48:11 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-30 12:48:16 [INFO] Processing SRX8590512. (13/19)
2021-08-30 12:48:16 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-30 12:48:19 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-30 12:48:23 [INFO] Processing SRX8590514. (14/19)
2021-08-30 12:48:23 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-30 12:48:30 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-30 12:48:37 [INFO] Processing SRX8590528. (15/19)
2021-08-30 12:48:37 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-30 12:48:46 [INFO] Processing SRX8590513. (16/19)
2021-08-30 12:48:46 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-30 12:48:52 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-30 12:48:57 [INFO] Writing to disk...
2021-08-30 12:49:04 [INFO] Processing SRX8590515. (17/19)
2021-08-30 12:49:04 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-30 12:49:11 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-30 12:49:19 [INFO] Processing SRX8590516. (18/19)
2021-08-30 12:49:19 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-30 12:49:24 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-30 12:49:30 [INFO] Processing SRX8590518. (19/19)
2021-08-30 12:49:30 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-30 12:49:35 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-30 12:49:40 [INFO] Writing to disk...
2021-08-30 12:49:41 [INFO] Finished.
2021-08-30 21:27:44 [INFO] Starting.
2021-08-30 21:27:44 [INFO] Processing /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/
2021-08-30 21:27:44 [INFO] Appending to existing aggregate : /grid/gillis/data/nfox/hi_c_data_processing/data_mouse/SRP268173/aggregate.hdf5
2021-08-30 21:27:44 [WARNING] chroms=/grid/gillis/data/nfox/genomes/mus_musculus_10/mm10.chrom.sizes is ignored due to existing aggregate.
2021-08-30 21:27:45 [INFO] Building aggregate for 500kbp_raw network.
2021-08-30 21:27:45 [INFO] Writing every 10 Runs.
2021-08-30 21:27:45 [INFO] Processing SRX8590529. (1/19)
2021-08-30 21:27:45 [INFO] Processing SRX8590529-SRR12062680. (1/36)
2021-08-30 21:27:50 [INFO] Processing SRX8590529-SRR12062681. (2/36)
2021-08-30 21:27:55 [INFO] Processing SRX8590527. (2/19)
2021-08-30 21:27:55 [INFO] Processing SRX8590527-SRR12062678. (3/36)
2021-08-30 21:27:58 [INFO] Processing SRX8590521. (3/19)
2021-08-30 21:27:58 [INFO] Processing SRX8590521-SRR12062667. (4/36)
2021-08-30 21:28:03 [INFO] Processing SRX8590521-SRR12062666. (5/36)
2021-08-30 21:28:08 [INFO] Processing SRX8590520. (4/19)
2021-08-30 21:28:08 [INFO] Processing SRX8590520-SRR12062665. (6/36)
2021-08-30 21:28:11 [INFO] Processing SRX8590520-SRR12062664. (7/36)
2021-08-30 21:28:14 [INFO] Processing SRX8590519. (5/19)
2021-08-30 21:28:14 [INFO] Processing SRX8590519-SRR12062663. (8/36)
2021-08-30 21:28:17 [INFO] Processing SRX8590519-SRR12062662. (9/36)
2021-08-30 21:28:19 [INFO] Processing SRX8590517. (6/19)
2021-08-30 21:28:19 [INFO] Processing SRX8590517-SRR12062658. (10/36)
2021-08-30 21:28:23 [INFO] Writing to disk...
2021-08-30 21:28:23 [INFO] Processing SRX8590517-SRR12062659. (11/36)
2021-08-30 21:28:27 [INFO] Processing SRX8590522. (7/19)
2021-08-30 21:28:27 [INFO] Processing SRX8590522-SRR12062669. (12/36)
2021-08-30 21:28:32 [INFO] Processing SRX8590522-SRR12062668. (13/36)
2021-08-30 21:28:37 [INFO] Processing SRX8590524. (8/19)
2021-08-30 21:28:37 [INFO] Processing SRX8590524-SRR12062672. (14/36)
2021-08-30 21:28:41 [INFO] Processing SRX8590524-SRR12062673. (15/36)
2021-08-30 21:28:46 [INFO] Processing SRX8590523. (9/19)
2021-08-30 21:28:46 [INFO] Processing SRX8590523-SRR12062670. (16/36)
2021-08-30 21:28:52 [INFO] Processing SRX8590523-SRR12062671. (17/36)
2021-08-30 21:28:56 [INFO] Processing SRX8590525. (10/19)
2021-08-30 21:28:56 [INFO] Processing SRX8590525-SRR12062675. (18/36)
2021-08-30 21:29:04 [INFO] Processing SRX8590525-SRR12062674. (19/36)
2021-08-30 21:29:10 [INFO] Processing SRX8590526. (11/19)
2021-08-30 21:29:10 [INFO] Processing SRX8590526-SRR12062676. (20/36)
2021-08-30 21:29:15 [INFO] Writing to disk...
2021-08-30 21:29:16 [INFO] Processing SRX8590526-SRR12062677. (21/36)
2021-08-30 21:29:21 [INFO] Processing SRX8590511. (12/19)
2021-08-30 21:29:21 [INFO] Processing SRX8590511-SRR12062647. (22/36)
2021-08-30 21:29:25 [INFO] Processing SRX8590511-SRR12062646. (23/36)
2021-08-30 21:29:28 [INFO] Processing SRX8590512. (13/19)
2021-08-30 21:29:28 [INFO] Processing SRX8590512-SRR12062649. (24/36)
2021-08-30 21:29:32 [INFO] Processing SRX8590512-SRR12062648. (25/36)
2021-08-30 21:29:34 [INFO] Processing SRX8590514. (14/19)
2021-08-30 21:29:34 [INFO] Processing SRX8590514-SRR12062652. (26/36)
2021-08-30 21:29:38 [INFO] Processing SRX8590514-SRR12062653. (27/36)
2021-08-30 21:29:43 [INFO] Processing SRX8590528. (15/19)
2021-08-30 21:29:43 [INFO] Processing SRX8590528-SRR12062679. (28/36)
2021-08-30 21:29:49 [INFO] Processing SRX8590513. (16/19)
2021-08-30 21:29:49 [INFO] Processing SRX8590513-SRR12062650. (29/36)
2021-08-30 21:29:54 [INFO] Processing SRX8590513-SRR12062651. (30/36)
2021-08-30 21:29:58 [INFO] Writing to disk...
2021-08-30 21:30:10 [INFO] Processing SRX8590515. (17/19)
2021-08-30 21:30:10 [INFO] Processing SRX8590515-SRR12062655. (31/36)
2021-08-30 21:30:16 [INFO] Processing SRX8590515-SRR12062654. (32/36)
2021-08-30 21:30:21 [INFO] Processing SRX8590516. (18/19)
2021-08-30 21:30:21 [INFO] Processing SRX8590516-SRR12062657. (33/36)
2021-08-30 21:30:25 [INFO] Processing SRX8590516-SRR12062656. (34/36)
2021-08-30 21:30:30 [INFO] Processing SRX8590518. (19/19)
2021-08-30 21:30:30 [INFO] Processing SRX8590518-SRR12062660. (35/36)
2021-08-30 21:30:33 [INFO] Processing SRX8590518-SRR12062661. (36/36)
2021-08-30 21:30:37 [INFO] Writing to disk...
2021-08-30 21:30:38 [INFO] Finished.