Index of /shares/gillislab/temp/septation/lizard

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[DIR]data/ 2024-12-21 23:25 -  
[DIR]expressolog/ 2024-12-21 23:11 -  
[ ]get_stage_specific_g..>2024-12-21 23:11 403K 
[TXT]lizard_stage_tau.csv 2024-12-21 23:11 1.0M 
[TXT]lizard_stage_markers..>2024-12-21 23:11 710K 
[TXT]lizard_stage16_cellt..>2024-12-21 23:11 4.8M 
[ ]get_markers_celltype..>2024-12-21 23:11 186K 
[TXT]lizard_stage13_cellt..>2024-12-21 23:11 3.0M 
[TXT]lizard_stage9_cellty..>2024-12-21 23:11 5.3M 
[TXT]stage16_sample3_Qiu_..>2024-12-21 23:11 652K 
[TXT]stage16_sample2_Qiu_..>2024-12-21 23:11 1.2M 
[TXT]stage16_sample1_Qiu_..>2024-12-21 23:11 957K 
[TXT]stage13_sample3_Qiu_..>2024-12-21 23:11 603K 
[TXT]stage13_sample2_Qiu_..>2024-12-21 23:11 640K 
[TXT]stage13_sample1_Qiu_..>2024-12-21 23:11 609K 
[TXT]stage9_sample3_Qiu_S..>2024-12-21 23:11 1.0M 
[TXT]stage9_sample2_Qiu_S..>2024-12-21 23:11 1.0M 
[TXT]stage9_sample1_Qiu_S..>2024-12-21 23:11 1.1M 
[TXT]stage9_sample3_Qiu_E..>2024-12-21 23:11 839K 
[TXT]stage9_sample2_Qiu_E..>2024-12-21 23:11 800K 
[TXT]stage9_sample1_Qiu_E..>2024-12-21 23:11 811K 
[TXT]stage13_sample3_Qiu_..>2024-12-21 23:11 515K 
[TXT]stage13_sample2_Qiu_..>2024-12-21 23:11 512K 
[TXT]stage13_sample1_Qiu_..>2024-12-21 23:11 477K 
[TXT]stage16_sample3_Qiu_..>2024-12-21 23:11 513K 
[TXT]stage16_sample2_Qiu_..>2024-12-21 23:11 906K 
[TXT]stage16_sample1_Qiu_..>2024-12-21 23:11 752K 
[ ]calc_coexp_cons_pseu..>2024-12-21 23:11 82K 
[ ]lizard_stage16_coexp..>2024-12-21 23:11 1.7G 
[ ]lizard_stage13_coexp..>2024-12-21 23:11 1.2G 
[ ]lizard_stage9_coexp_..>2024-12-21 23:11 1.2G 
[ ]build_pseudobulk_coe..>2024-12-21 23:11 11K 
[ ]calc_expressolog.ipynb 2024-12-21 23:11 80K 
[ ]stage16_pseudobulk_e..>2024-12-21 23:11 1.9M 
[ ]stage13_pseudobulk_e..>2024-12-21 23:11 1.4M 
[ ]stage9_pseudobulk_ex..>2024-12-21 23:11 1.5M 
[ ]lizard_cross_stage_M..>2024-12-21 23:11 9.7K 
[TXT]lizard_turtle_orthol..>2024-12-21 23:11 2.1M 
[ ]annotate_hierarchica..>2024-12-21 23:11 18K 
[ ]stage16_integrated_c..>2024-12-21 23:10 2.1G 
[TXT]turtle_gene_protein.txt2024-12-21 23:10 48M 
[ ]stage13_integrated_c..>2024-12-21 23:10 1.4G 
[ ]stage9_integrated_cc..>2024-12-21 23:10 2.4G 
[ ]run_MN_cross_sample...>2024-12-21 23:10 338K 
[ ]run_MN_cross_stage_K..>2024-12-21 23:10 146K 
[ ]stage16_sample3_data..>2024-12-21 23:10 943M 
[ ]stage16_sample2_data..>2024-12-21 23:10 1.7G 
[ ]stage16_sample1_data..>2024-12-21 23:10 1.4G 
[ ]stage13_sample3_data..>2024-12-21 23:09 938M 
[ ]stage13_sample2_data..>2024-12-21 23:09 956M 
[ ]stage13_sample1_data..>2024-12-21 23:09 882M 
[TXT]lizard_chicken_ortho..>2024-12-21 23:09 2.2M 
[ ]stage9_sample3_data.rds2024-12-21 23:09 1.6G 
[TXT]lizard_human_ortholo..>2024-12-21 23:09 2.3M 
[ ]annotate_hierarchica..>2024-12-21 23:09 18K 
[ ]stage9_sample2_data.rds2024-12-21 23:09 1.5G 
[TXT]chicken_gene_protein..>2024-12-21 23:09 1.6M 
[TXT]human_gene_protein_e..>2024-12-21 23:09 8.9M 
[TXT]lizard_gene_protein.txt2024-12-21 23:09 32M 
[ ]stage9_sample1_data.rds2024-12-21 23:09 1.5G 
[ ]turtle_gff.gff 2024-12-21 23:09 496M 
[TXT]lizard_mouse_ortholo..>2024-12-21 23:09 2.5M 
[ ]stage16_sample3_raw_..>2024-12-21 23:09 16M 
[ ]stage16_sample2_raw_..>2024-12-21 23:09 27M 
[ ]stage16_sample1_raw_..>2024-12-21 23:09 27M 
[ ]stage13_sample3_raw_..>2024-12-21 23:09 18M 
[ ]stage13_sample2_raw_..>2024-12-21 23:09 19M 
[ ]stage13_sample1_raw_..>2024-12-21 23:09 15M 
[ ]stage9_sample3_raw_d..>2024-12-21 23:09 35M 
[ ]stage9_sample2_raw_d..>2024-12-21 23:09 36M 
[ ]eggNOG_emapper.ortho..>2024-12-21 23:09 261M 
[ ]lizard_gff.gff 2024-12-21 23:09 278M 
[ ]stage9_sample1_raw_d..>2024-12-21 23:09 23M 
[TXT]mouse_gene_protein_e..>2024-12-21 23:09 5.4M 
[ ]get_gff_orthologs.ipynb2024-12-21 23:09 45K 
[ ]stage16_metacell_MN_..>2024-12-21 23:09 3.9M 
[ ]stage13_metacell_MN_..>2024-12-21 23:09 2.2M 
[ ]stage9_metacell_MN_s..>2024-12-21 23:09 5.7M 
[ ]lizard_full_integrat..>2024-12-21 23:09 4.6M 
[TXT]stage13_merged_batch..>2024-12-21 23:09 1.4M 
[TXT]stage9_merged_batch_..>2024-12-21 23:09 2.5M 
[ ]lizard_integrated_ps..>2024-12-21 23:09 4.8M 
[ ]lizard_integrated_ss..>2024-12-21 23:09 3.1G 
[ ]batch_effects_seurat..>2024-12-21 23:08 567K 
[ ]convert_to_anndata.i..>2024-12-21 23:08 19K 
[ ]batch_correction_ssS..>2024-12-21 23:08 558K 
[ ]get_pseudobulk2.ipynb 2024-12-21 23:08 14K 
[ ]run_MN_cross_stage.i..>2024-12-21 23:08 396K 
[ ]plot_batch_umaps_v2...>2024-12-21 23:08 915K 
[TXT]lizard_scanorama_clu..>2024-12-21 23:08 3.1M 
[TXT]lizard_scanorama_uma..>2024-12-21 23:08 3.9M 
[TXT]lizard_scanorama_pca..>2024-12-21 23:08 197M 
[ ]lizard_scanorama.h5ad 2024-12-21 23:08 2.2G 
[ ]stage16_sample3_hvg...>2024-12-21 23:08 36M 
[ ]stage16_sample3_hvg...>2024-12-21 23:08 41M 
[ ]stage16_sample2_hvg...>2024-12-21 23:08 58M 
[ ]stage16_sample2_hvg...>2024-12-21 23:08 66M 
[ ]stage16_sample1_hvg...>2024-12-21 23:08 54M 
[ ]stage16_sample1_hvg...>2024-12-21 23:08 62M 
[ ]manual_anno1.ipynb 2024-12-21 23:08 219K 
[ ]batch_correction_cca..>2024-12-21 23:08 252K 
[ ]get_pseudobulk.ipynb 2024-12-21 23:08 9.5K 
[ ]annotate_Feng.ipynb 2024-12-21 23:08 8.5K 
[ ]annotate_Hill.ipynb 2024-12-21 23:08 12K 
[ ]annotate_Asp.ipynb 2024-12-21 23:08 9.9K 
[ ]label_transfer_Seura..>2024-12-21 23:08 12K 
[ ]stage13_sample3_hvg...>2024-12-21 23:08 40M 
[ ]stage13_sample3_hvg...>2024-12-21 23:08 46M 
[ ]stage13_sample2_hvg...>2024-12-21 23:08 39M 
[ ]stage13_sample2_hvg...>2024-12-21 23:08 45M 
[ ]stage13_sample1_hvg...>2024-12-21 23:08 35M 
[ ]stage13_sample1_hvg...>2024-12-21 23:08 40M 
[ ]stage9_sample3_hvg.h5ad2024-12-21 23:08 67M 
[ ]stage9_sample3_hvg.h..>2024-12-21 23:08 78M 
[ ]stage9_sample2_hvg.h5ad2024-12-21 23:08 67M 
[ ]stage9_sample2_hvg.h..>2024-12-21 23:08 78M 
[TXT]lizard_ssSTACAS_cell..>2024-12-21 23:08 1.4K 
[ ]stage9_sample1_hvg.h5ad2024-12-21 23:08 49M 
[ ]stage9_sample1_hvg.h..>2024-12-21 23:08 55M 
[ ]harmonize_labels1.ipynb2024-12-21 23:08 1.0M 
[TXT]lizard_celltype_mark..>2024-12-21 23:08 5.5M 
[DIR]annotations/ 2024-12-21 23:08 -  
[ ]get_metacells2.ipynb 2024-12-21 23:08 24K 
[TXT]stage16_metacell.csv 2024-12-21 23:08 951K 
[ ]scib_scanorama_v2.ipynb2024-12-21 23:08 1.0M 
[TXT]lizard_celltype_anno..>2024-12-21 23:08 9.3M 
[ ]get_consensus_cellty..>2024-12-21 23:08 18K 
[ ]scib_scGEN_v2.ipynb 2024-12-21 23:08 744K 
[TXT]stage16_batch_correc..>2024-12-21 23:08 13M 
[TXT]stage13_batch_correc..>2024-12-21 23:08 9.1M 
[TXT]stage9_batch_correct..>2024-12-21 23:08 15M 
[ ]batch_corrected_data..>2024-12-21 23:08 398K 
[ ]plot_batch_umaps.ipynb 2024-12-21 23:08 308K 
[TXT]stage9_scGEN_cluster..>2024-12-21 23:08 1.2M 
[TXT]stage9_scGEN_umap_hv..>2024-12-21 23:08 1.6M 
[TXT]stage9_scGEN_pca_hvg..>2024-12-21 23:08 80M 
[TXT]stage9_scGEN_hvg_mat..>2024-12-21 23:08 317  
[TXT]stage9_scGEN_hvg_mat..>2024-12-21 23:08 315  
[TXT]stage13_scGEN_cluste..>2024-12-21 23:08 708K 
[TXT]stage13_scGEN_umap_h..>2024-12-21 23:08 1.0M 
[TXT]stage13_scGEN_pca_hv..>2024-12-21 23:08 48M 
[TXT]stage13_scGEN_hvg_ma..>2024-12-21 23:08 314  
[TXT]stage13_scGEN_hvg_ma..>2024-12-21 23:08 316  
[TXT]stage16_scGEN_cluste..>2024-12-21 23:08 1.0M 
[TXT]stage16_scGEN_umap_h..>2024-12-21 23:08 1.4M 
[TXT]stage16_scGEN_pca_hv..>2024-12-21 23:08 70M 
[TXT]stage16_scGEN_hvg_ma..>2024-12-21 23:08 316  
[TXT]stage16_scGEN_hvg_ma..>2024-12-21 23:08 317  
[TXT]stage9_scanorama_clu..>2024-12-21 23:08 1.2M 
[TXT]stage9_scanorama_uma..>2024-12-21 23:08 1.6M 
[TXT]stage9_scanorama_pca..>2024-12-21 23:08 80M 
[TXT]stage9_scanorama_hvg..>2024-12-21 23:08 316  
[ ]scib_scGEN.ipynb 2024-12-21 23:08 768K 
[TXT]stage13_scanorama_cl..>2024-12-21 23:08 708K 
[TXT]stage13_scanorama_um..>2024-12-21 23:08 960K 
[TXT]stage13_scanorama_pc..>2024-12-21 23:08 48M 
[TXT]stage13_scanorama_hv..>2024-12-21 23:08 316  
[TXT]stage13_scanorama_hv..>2024-12-21 23:08 314  
[TXT]stage9_scanorama_hvg..>2024-12-21 23:08 317  
[TXT]stage16_scanorama_cl..>2024-12-21 23:08 1.0M 
[TXT]stage16_scanorama_um..>2024-12-21 23:08 1.4M 
[TXT]stage16_scanorama_pc..>2024-12-21 23:08 70M 
[TXT]stage16_scanorama_hv..>2024-12-21 23:08 315  
[TXT]stage16_scanorama_hv..>2024-12-21 23:08 316  
[ ]stage16_fastMNN.Rdata 2024-12-21 23:08 157M 
[ ]batch_correction_sca..>2024-12-21 23:08 882K 
[ ]stage13_fastMNN.Rdata 2024-12-21 23:08 121M 
[ ]stage9_fastMNN.Rdata 2024-12-21 23:08 203M 
[ ]batch_correction_fas..>2024-12-21 23:08 470K 
[TXT]stage16_scanorama_cl..>2024-12-21 23:08 1.1M 
[TXT]stage16_scanorama_um..>2024-12-21 23:08 1.4M 
[TXT]stage16_scanorama_pc..>2024-12-21 23:08 70M 
[TXT]stage13_scanorama_cl..>2024-12-21 23:08 749K 
[TXT]stage13_scanorama_um..>2024-12-21 23:08 966K 
[TXT]stage13_scanorama_pc..>2024-12-21 23:08 48M 
[TXT]stage9_scanorama_clu..>2024-12-21 23:08 1.3M 
[TXT]stage9_scanorama_uma..>2024-12-21 23:08 1.6M 
[TXT]stage9_scanorama_pca..>2024-12-21 23:08 80M 
[ ]stage16_integrated_r..>2024-12-21 23:08 2.1G 
[ ]stage13_integrated_r..>2024-12-21 23:08 1.4G 
[ ]scib_scanorama.ipynb 2024-12-21 23:08 1.0M 
[ ]stage9_integrated_rp..>2024-12-21 23:07 2.4G 
[ ]batch_correction_rpc..>2024-12-21 23:07 703K 
[TXT]stage16_merged_batch..>2024-12-21 23:07 2.1M 
[ ]label_transfer_Symph..>2024-12-21 23:07 13K 
[ ]label_transfer_Seura..>2024-12-21 23:07 14K 
[TXT]stage13_metacell.csv 2024-12-21 23:07 695K 
[ ]pairwise_MN_metacell..>2024-12-21 23:07 811K 
[TXT]stage9_metacell.csv 2024-12-21 23:07 1.1M 
[ ]annotate_hierarchica..>2024-12-21 23:07 17K 
[ ]annotate_Farah.ipynb 2024-12-21 23:07 8.5K 
[ ]annotate_Mantri.ipynb 2024-12-21 23:07 13K 
[DIR]QC/ 2024-12-21 23:07 -  
[TXT]stage16_sample3_Qiu_..>2024-12-21 23:07 514K 
[TXT]stage16_sample2_Qiu_..>2024-12-21 23:07 909K 
[TXT]stage16_sample1_Qiu_..>2024-12-21 23:07 756K 
[ ]stage16_integrated_p..>2024-12-21 23:07 1.6M 
[ ]stage13_integrated_p..>2024-12-21 23:07 1.5M 
[ ]stage9_integrated_ps..>2024-12-21 23:07 1.7M 
[ ]annotate_Cui.ipynb 2024-12-21 23:07 8.5K 
[ ]annotate_Xu.ipynb 2024-12-21 23:07 8.6K