Species	Tissue	CellType	Marker	Resource
Mouse	Embryo	4-cell stage cell (Blastomere)	Adpgk, Arg2, Arih1, Cdca7l, Clock, Cnot6l, Eif4enif1, Fam46c, Git2, Gng12, Rnf38, Sin3a, Tomm34, Zbtb39	23892778
Mouse	Embryo	8-cell stage cell (Blastomere)	Abcf1, Cdc37, Diablo, Eif1ad, Eif4g1, Fam32a, Kdm5b, Med28, Phax, Snu13, Sssca1, Yrdc	23892778
Mouse	Embryo	Adult endothelial progenitor cell	Peg3	28090691
Mouse	Embryo	Anterior visceral endoderm cell	Amn, Cubn	27383781
Mouse	Embryo	Astrocyte	Gfap	18451536, 17210262, 8568918, 7529590, 7530466, 8361632, 1700431
Mouse	Embryo	Cardiac muscle cell	Tnnt2, Actn2, Bmp4, Emcn, Fbn1, Gata4, Hand1, Hand2, Mef2c, Myh6, Myh7, Myl2, Myl4, Neb, Nid1, Tbx20, Tbx3, Tnnc1, Ttn, Vim	34489600, 26651608, 21139340, 29371425
Mouse	Embryo	Chondroblast	Dlk1	20058200
Mouse	Embryo	Chondrocyte	Sox5	35460187
Mouse	Embryo	Chromaffin cell	Ascl1, Chga, Penk, Phox2b, Dbh, Htr3a, Plp1, Sox10, Th	35277192
Mouse	Embryo	Ectodermal cell	Dlx5, Dlx6, Eif5, Essrb, Hoxb1, Krt18, Krt8, Lhx5, Nes, Neurod1, Otx1, Pax3, Pax6, Sox1, Sox2	31590918, 34779479, 20452321, 27383781
Mouse	Embryo	Embryonic stem cell	Pou5f1, Fut4, Neurod1, Neurod2, Nrn1, Slc17a6, Slc17a7, Alpl, Calb2, Cd38, CLy75, Dpp4, Eng, Esrrb, Icam1, Itgae, Jam2, Kit, Lhx5, Ndnf, Reln, Sox2, Tet2, Trp73	30257965, 31242409, 34599190, 21057976, 17980868, 16433621, 31078527
Mouse	Embryo	Endocardial cell	Cdh5, Fli1, Gata2, Ramp2, Rdx, Sox7, Tal1	29371425
Mouse	Embryo	Endodermal cell	Gata6, Gata4, Gata5, Nepn, Onecut1	34647690, 30257965, 20452321
Mouse	Embryo	Endothelial cell	Pecam1, Cdh5, Kdr, Cd34, Procr, Tek, Egfl7, Eng, Nr2f2, Plvap, Sox18, Tie1, 2810025M15Rik, Abhd17a, Abi3, Acer2, Adam15, Adgra2, Adgre5, Adgrl1, Adgrl4, Afap1l1, Afdn, Agpat4, Akr1a1, Amotl1, Anxa2, Anxa5, Anxa6, Aopep, Aph1a, Aplnr, Aplp2, Apoe, Aqp1, Arap3, Arhgap31, Arhgef12, Arhgef15, Arhgef7, Armcx1, Armcx2, Armcx4, Arpc3, Arrb2, Asb4, Atf3, Atp2b1, B2m, Babam1, Bambi, Bax, BC028528, Bcl6b, Bex2, Bgn, Bmp6, Bri3, Bst2, Btg1, Bvht, C430049B03Rik, Calcrl, Calm1, Calu, Capg, Capn2, Carhsp1, Cavin1, Ccdc80, Ccdc85b, Ccnd1, Cd38, Cd59a, Cd63, Cd81, Cd93, Cdc42ep1, Cdc42ep5, Cdkn1a, Cdkn1c, Cemip2, Cib1, Ckap4, Cldn5, Clec14a, Clic1, Clta, Cmtm3, Cmtm8, Cnn3, Col18a1, Col4a1, Col4a2, Cotl1, Cox7a2l, Creb3l2, Crip1, Crip2, Ctla2a, Ctla2b, Ctnna1, Ctnnb1, Ctsd, Ctsh, Ctsl, Cttnbp2nl, Cxcr4, Dad1, Dcaf12l1, Ddah1, Ddah2, Degs1, Dlc1, Dok4, Dpagt1, Dpysl2, Dpysl3, Ece1, Ecscr, Edn1, Eif4ebp1, Elk3, Elovl5, Emb, Emcn, Epas1, Ephb4, Epn2, Esam, Ets1, Ets2, Etv2, Eva1b, Evi5, Exoc3l4, F2r, Fam110d, Fam3c, Fam43a, Fblim1, Fbn1, Fbn2, Fdps, Fermt2, Fgd5, Fgfr1, Fkbp10, Fkbp1a, Fli1, Flrt2, Fmo1, Fn1, Fscn1, Fstl1, Fuca1, Furin, Fxyd5, Gabarap, Gad2, Galnt1, Gap43, Garre1, Gas6, Gata4, Gata6, Gchfr, Gdi2, Gdpd5, Gimap1, Gimap4, Gimap6, Gipc1, Git1, Gja4, Glmp, Gm13889, Gm31734, Gmfg, Gnai2, Gnas, Gnb1, Gnb2, Gng11, Gngt2, Gorasp2, Gpm6b, Grap, Grcc10, Grn, Gsta4, H1f0, Hand2, Hapln1, Hdac7, Hecw2, Hexa, Hmga2, Hmgcs1, Hoxb2, Hoxb5, Hsp90b1, Hspa5, Hspg2, Hyal2, Icam2, Id1, Id2, Id3, Idh1, Ifitm3, Igf1, Igf2, Igf2r, Igfbp4, Itm2a, Itm2b, Itm2c, Jun, Junb, Jund, Jup, Kank3, Kctd17, Kdelr2, Klf2, Klf4, Klf6, Klhl6, Krtcap2, Lamp1, Laptm4b, Ldb2, Lgals1, Lgmn, Lifr, Limch1, Limd2, Litaf, Lpar4, Lpar6, Lrp11, Lrrc58, Ltc4s, Luzp1, Lxn, Ly6c1, Lyve1, Macf1, Macroh2a2, Madcam1, Maged2, Malat1, Manf, Map3k11, Map4k4, Map7d1, Mapk12, Mapk3, Mapre2, Marcks, Marcksl1, Med10, Meis2, Mest, Mgat4b, Mid1ip1, Mmd, Mmrn2, Mpzl1, Mrps18a, Mrps6, Msn, Msx1, Mtch1, Mtus1, Myct1, Myl12b, Myo1c, Myzap, N4bp3, Nav1, Nckap1, Ndel1, Ndn, Ndufa8, Nectin2, Net1, Nfatc1, Nfib, Nfkbia, Nid1, Nme2, Nop53, Nos3, Notch1, Npc2, Npdc1, Nr2f6, Nrarp, Nrep, Nrp1, Nrp2, Oaz2, Oit3, Orai1, P4hb, Pald1, Parva, Pcbp4, Pcdh17, Pcgf5, Pdgfb, Pdia3, Pdia6, Pdlim1, Pdlim3, Pea15a, Peg10, Peg3, Phlda3, Piezo1, Pim3, Plac1, Plec, Plekho1, Plk2, Plp2, Plxnd1, Polg, Pon2, Ppib, Ppic, Ppp1r2, Ppp3ca, Prcp, Prdx1, Prdx6, Prelid1, Prkar1a, Prr13, Psap, Ptms, Ptpn18, Ptprb, Pxdn, Rab2a, Rabac1, Ralb, Ramp2, Rasgrp3, Rasip1, Rbfox2, Rbms2, Rbpms, Rcn1, Rcn3, Rftn1, Rgl1, Rgs2, Rgs3, Rhob, Rhoc, Rhoj, Rnasek, Rras, Rrbp1, Rspo3, S100a10, S100a13, S1pr1, Sat1, Selenok, Selenop, Selenow, Serf2, Serpinh1, Sgk1, Sh3bgrl3, Sh3bp5, Sh3gl3, She, Shisa5, Sin3b, Slc25a4, Slc29a1, Slc40a1, Slc6a6, Slc9a3r2, Smad1, Smad6, Smad7, Smim19, Snx3, Soat1, Sorbs1, Sox17, Sox7, Sparc, Spats2, Sptbn1, Sqstm1, Srgap1, Sri, Ssbp4, Ssu72, Stard4, Sypl, Tagln2, Tamalin, Tax1bp3, Tbrg1, Tcf4, Tcim, Tead2, Tfpi, Tgfb1i1, Tgm2, Thsd1, Tiam1, Tjp1, Tlnrd1, Tm6sf1, Tmed9, Tmem204, Tmsb10, Tnfaip1, Tnfaip2, Tpm4, Tprgl, Trim47, Triobp, Tspan12, Tspan13, Tspan18, Tspan6, Tuba1a, Tubb6, Txndc12, Txndc5, Txnip, Ubald2, Ucn, Ushbp1, Vamp5, Vat1, Vim, Wwtr1, Xbp1, Ypel3, Zfp36l1, Znrf1	34779479, 34525376, 34647690, 35460187, 35587592, 31164147, 29564758, 24740971, 16926294, 16571784, 16189264, 16005453, 12630947, 11807029, 11744703, 8555485, 8223275, 27383781
Mouse	Embryo	Endothelial cell of artery	Dll4, Efnb2, Gja5, Acvrl1, Cd44, Cxcr4, Gja4, Hes1, Hey1, Jag2, Msx1, Notch4, Sox17, Tox2, Unc5b, Vegfc	34525376, 29973725
Mouse	Embryo	Epiblast cell	Dnmt3b, Eomes, Fgf5, Foxa2, Gsc, Lin28b, Nanog, Pou5f1, T	31590918, 30257965, 34599190, 27383781
Mouse	Embryo	Epidermal cell	Sfn	34647690
Mouse	Embryo	Epithelial cell	Bst2, Btg2, Cd36, Cox4i2, Crip1, Cygb, Dusp1, Ebf1, Egfl7, Eng, Epas1, Esam, Fabp4, Fos, Gadd45g, Gja4, Gm13889, Gng11, H2-D1, Hes1, Higd1b, Id1, Id3, Ier2, Ier3, Ifitm3, Igfbp5, Jun, Junb, Krt5, Ly6a, Ly6c1, Ly6e, Mgst3, Ndufa4l2, Nfkbia, Notch3, Nrp1, Pcp4l1, Pln, Ppp1r15a, Ptp4a3, Rasgrp2, Rasl11a, Rgs5, Septin4, Slc9a3r2, Sncg, Sparcl1, Tinagl1, Zfp36	35460187, 31164147
Mouse	Embryo	Epithelial fate stem cell	Lgr5	19806668
Mouse	Embryo	Erythro-myeloid progenitor cell	Gypa, Snca, Spta1	33570494
Mouse	Embryo	Erythrocyte	Alas2, Gypa, Hba-a2, Hbb-bs, 1500009L16Rik, 1700037H04Rik, 1810058I24Rik, 6030468B19Rik, Abcb10, Abcg2, Acp1, Acp5, Add2, Adk, Alad, Aldh9a1, Aldoa, Anp32b, Aqp8, Asf1a, Asns, Atf4, Atp5b, Atp5g1, Atpif1, BC021767, Bcas2, Bccip, Bid, Blvrb, Bnip3, Bnip3l, Bola3, Btg2, C1qbp, Cacybp, Car2, Carnmt1, Ccnb1, Ccnb2, Ccne1, Cct7, Cdc25b, Cdca3, Cenph, Chchd10, Cit, Cited2, Cited4, Cks2, Cmas, Cmc2, Cox17, Cox6b2, Cpne7, Cpox, Creg1, Cycs, Dctpp1, Ddit3, Ddx21, Ddx39a, Dek, Dhrs11, Dkc1, Dut, Dynll2, Eif3d, Eif5a, Eipr1, Ell2, Epb42, Epor, Eprs, F10, Fam162a, Fam210b, Fech, Fermt3, Foxh1, Fth1, Fxn, Gadd45a, Galk1, Gata1, Gclm, Gcsh, Gfi1b, Glrx5, Gm42166, Gm8203, Gmnn, Gp1bb, Gpx1, Grap2, Grhpr, Gtf2a2, Gypc, H2ac23, H2az1, Hat1, Hba-a1, Hba-x, Hbb-bh1, Hbb-bt, Hbb-y, Hbq1b, Hdgf, Hebp1, Hemgn, Hipk2, Hmbs, Hmgb2, Hmgb3, Homer2, Hsp90aa1, Hspa9, Hspd1, Hspe1, Hypk, Icam4, Ifrd2, Igsf3, Josd2, Kalrn, Klf1, Klhdc2, Ldha, Lmo2, Lyar, Mcm6, Mgst3, Mif, Mki67, Mllt3, Mpst, Mrpl12, Mrpl23, Mrps36, Mrto4, Mthfd2, Nadk2, Nasp, Ncf4, Ncl, Ncoa4, Ndufa5, Nfe2, Nhp2, Nme3, Nolc1, Nop10, Nop56, Nop58, Nrip3, Nsun2, Nt5c3, Nt5dc2, Odc1, Pa2g4, Pabpc4, Paics, Park7, Pbk, Pbx1, Pcna, Pgp, Pim1, Pnpo, Ppid, Ppm1g, Ppox, Prdx2, Prdx3, Prkar2b, Psmb10, Ptdss2, Pycr2, Rab3il1, Rab5if, Rap1b, Rbm38, Rcl1, Reep6, Rfc4, Rfesd, Rgs10, Rmdn3, Rnaseh2a, Rpia, Rpl14, Rrm2, Samd14, Samm50, Sec61g, Serbp1, Slbp, Slc25a37, Slc38a5, Slc39a8, Slc3a2, Smc2, Smim1, Smox, Snca, Snhg5, Snrnp25, Snrnp40, Snu13, Spaca9, Spc24, Spef1, Spns2, Spta1, Srm, Ssbp3, Ssx2ip, Taldo1, Tfdp2, Tfrc, Timm8a1, Tipin, Tk1, Tlcd1, Tmem14c, Tmod1, Tomm5, Top1, Tpi1, Trim10, Tspan32, Tspan33, Tuba4a, Tubb4b, Txn2, Ubash3b, Ube2l6, Ucp2, Umps, Uqcc2, Uqcrc1, Urod, Uros, Wdr12, Ybx3, Zfpm1, Znrd2	34779479, 34647690, 31164147
Mouse	Embryo	Fibroblast	Col5a2, Thy1	22980981
Mouse	Embryo	GABAergic interneuron	Gad1, Gad2, Htr3a, Lhx6, Prox1, Satb1, Slc6a1, Sox6	31242409
Mouse	Embryo	Germ cell	Ddx4, Fut4, Hexb, Mcf2, Morc1, Pou5f1, Sycp3, Zp3	27834666, 26740066, 16218822, 15236325, 11226261
Mouse	Embryo	Hematopoietic stem cell	Runx1, Cd34, Kdr, Kit, Pecam1, Ptprc, Tal1	34525376, 20980401, 25664528, 27383781
Mouse	Embryo	Hemogenic endothelial cell	Runx1	34525376
Mouse	Embryo	Immature chromaffin cell	Chga, Chgb, Dbh, Penk, Th	35277192
Mouse	Embryo	Leydig cell	Cdon, Crhr1, Cyp26b1, Gsg1l, Nppc, Pcsk6, Ppp2r5b, Ren1, Vsnl1	34262907
Mouse	Embryo	Macrophage	Adgre1, Csf1r, Il4ra, Adra2b, Cd163, Cd68, Dnase2a, Itgam, Itgax, Lgals3, Ly6c2, Vcam1	33570494
Mouse	Embryo	Megakaryocyte	1810058I24Rik, Abcb10, Abhd16a, Acyp1, Adgrg1, Ank3, Aqp8, Atpif1, Bbln, Bcas2, Bex4, Blvrb, Btg2, Capn3, Car2, Cbfa2t3, Ccdc12, Cd9, Cdkn2d, Cenpp, Cenpw, Ciao2a, Cit, Cited2, Cited4, Cks2, Clec1b, Clint1, Clu, Cmas, Colec11, Cox17, Cpne7, Creg1, Csf2rb, Csf2rb2, Dap, Dapp1, Diaph1, Dmac1, Dut, Ell2, Epb41, Epor, Etfb, F10, F2rl2, Fech, Fermt3, Fmc1, G6bos, Galk1, Gata1, Gclm, Gfi1b, Glrx5, Gm13846, Gm28857, Gm8203, Gnaz, Gp1bb, Gp5, Gp9, Gpx4, Gtf2a2, Gtf2h2, Gucy1a1, Gucy1b1, Gypc, H1f0, H2ac23, H2az1, H3f3b, Hba-a1, Hba-a2, Hbb-bh1, Hbb-bs, Hbq1b, Hdgf, Hemgn, Hexim2, Hipk2, Hk1, Hmbs, Hmgb3, Hypk, Ilk, Itga2b, Itgb3, Jpt1, Kalrn, Khk, Klf1, Lims1, Lmo2, Lrrfip2, Mdm1, Mef2c, Mff, Mfsd2b, Mllt3, Mpc1, Mpig6b, Mpl, Mrps11, Ncoa4, Ncor1, Ndrg3, Nfe2, Nt5c3, Nucks1, P2rx1, Pbx1, Pdcd4, Pf4, Phlda1, Plek, Plgrkt, Ppm1g, Prdx2, Prkab1, Prkar2b, Prkca, Prkcq, Psmb10, Ptp4a3, Ptpn11, R3hdm4, Rab11a, Rab27b, Rabgap1l, Rap1b, Rasgrp2, Rbm38, Rbpms2, Rfc2, Rgs10, Rida, Rpl14, Rps4l, Rsu1, Samd14, Sla, Sla2, Slain2, Smim1, Smox, Snca, Snrnp25, Spsb2, Syngr1, Tal1, Taldo1, Tgfb1, Thbs1, Tmem123, Tmem14c, Tmem158, Tmod1, Tnfaip8, Tnni1, Tspan32, Tuba1c, Tuba4a, Tubb4b, Uba7, Ubash3b, Zfpm1, Zyx	31164147
Mouse	Embryo	Mesenchymal cell	Col3a1, Acta2, Col1a1, Col1a2, Dcn, Pdgfra, Prrx2, Tagln	31590918, 34779479, 35460187
Mouse	Embryo	Mesenchymal stem cell	Tbx6	33976190
Mouse	Embryo	Mesodermal cell	Eomes, T, Col1a2, CXADR, Hand1, Isl1, Kdr, Mesd, Myf5, Myod1, Nkx2-5, Pou5f1, Sox2, Tbx2, Tlnrd1	31590918, 33976190, 25762001, 20452321
Mouse	Embryo	Mesonephric nephron tubule epithelial cell	Wnt4, Wt1	33976190
Mouse	Embryo	Nasopharyngeal epithelial cell of ectoderm	Tbx1	33976190
Mouse	Embryo	Nasopharyngeal epithelial cell of mesoderm	Prdm1, Tbx1	27383781
Mouse	Embryo	Nephric duct progenitor cell	H2ac23, H2ac24, Tfap2b, Top2a	33976190
Mouse	Embryo	Neural crest cell	Sox10, Ednrb, Nkx2-9, Pax3, Tfap2a, Wnt1, Wnt3a, Zeb2	34779479, 34647690, 10946068, 9053326
Mouse	Embryo	Neuron	Atoh1, Bcl11b, Slc17a7	28507510, 10448218
Mouse	Embryo	Osteoblast	Sp7	35460187
Mouse	Embryo	Pluripotent stem cell	Pou5f1, Alpl, Fut4, Nanog, Zfp42	31590918, 16761728
Mouse	Embryo	Primitive red blood cell	Gata1, Hbb-bh1, Klf1	27383781
Mouse	Embryo	Progenitor cell	Mesp1, Mixl1, Wnt3	27383781
Mouse	Embryo	Schwann cell	Cdh19	35460187
Mouse	Embryo	Sensory neuron	Hmx1, Nhlh2	34647690
Mouse	Embryo	Skeletal muscle satellite cell	Myf5, Myh3, Myod1, Myog, Pax7	35460187
Mouse	Embryo	Skeletal muscle satellite myogenic cell	Acta2, Myod1, Myog, Tagln, Tnni1	31590918
Mouse	Embryo	Skin stem cell	Egfr, Nes	27105606
Mouse	Embryo	Stem cell	Adgrg1, Adgrg3, Alox5ap, Apex1, Arhgdib, Arpc1b, B9d2, Ccdc12, Cd34, Cd52, Cebpb, Cela1, Celf2, Coro1a, Cst3, Ctla2a, Ctsc, Cxxc5, Dctpp1, Dnmt3b, Dok2, Dusp2, Erh, Fcer1g, Fcgr3, Fgf3, Fut8, Gmfg, Gpsm3, Grcc10, Gsta4, H2ac23, H2az2, H3f3a, Hhex, Hmga2, Hmgb1, Hmgn2, Homer3, Ier2, Ifitm1, Ifitm2, Igf1, Ikzf1, Il11ra1, Inka1, Itgb3, Itm2a, Kctd12, Lamtor4, Laptm5, Lsm2, Ly6e, Lyl1, Macroh2a1, Mef2c, Mpl, Mpo, Mtdh, Myb, Ncl, Ninj1, Nop10, Npm1, Nrgn, Nrros, P2rx1, Perp, Phgdh, Pim2, Plcg2, Plcl2, Plek, Plscr1, Pnp, Ppp1r18, Psme1, Ptgs1, Ptma, Ptpn18, Ptpn6, Ptpre, Rab27b, Rasgrp2, Rcc2, Rgs18, Rgs2, Rnf130, Rnf149, Rps6ka1, Runx1, Sall3, Samsn1, Set, Slc25a5, Smagp, Spacdr, Spi1, Ssbp4, Sub1, Tecr, Tmem176b, Tnfrsf1a, Tyms, Tyrobp, Zfand5, Zfp36l2	31164147
Mouse	Embryo	Sympathetic neuron	Ascl1, Cartpt, Phox2b, Ret, Th	35277192
Mouse	Embryo	Sympathoblast	Alk, Cartpt, Hmx1, Phox2b, Prph, Ret, Th	35277192
Mouse	Embryo	Trophectodermal cell	Cdx2, Elf5, Eomes, Gata3, Tfap2a	33378329
Mouse	Embryo	Two-cell-like cell	Gm4340	34624246
Mouse	Embryo	Vein endothelial cell	Aplnr, Dab2, Ephb4, Nr2f2, Nrp2, Tek	29973725