Index of /shares/gillislab/temp/septation/turtle

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory   -  
[DIR]QC/ 2024-12-21 23:34 -  
[DIR]annotations/ 2024-12-21 23:34 -  
[DIR]data/ 2024-12-21 23:37 -  
[DIR]expressolog/ 2024-12-21 23:34 -  
[TXT]turtle_ssSTACAS_cell..>2024-12-21 23:34 1.4K 
[ ]Untitled1.ipynb 2024-12-21 23:36 1.5K 
[TXT]stage21_monocle_matc..>2024-12-21 23:36 1.6K 
[TXT]stage14_monocle_matc..>2024-12-21 23:36 2.0K 
[TXT]stage17_monocle_matc..>2024-12-21 23:36 2.4K 
[ ]stage21_monocle_clus..>2024-12-21 23:36 4.8K 
[ ]stage14_monocle_clus..>2024-12-21 23:36 7.3K 
[ ]stage17_monocle_clus..>2024-12-21 23:36 8.1K 
[ ]annotate_Farah.ipynb 2024-12-21 23:37 8.1K 
[ ]annotate_Cui.ipynb 2024-12-21 23:37 8.1K 
[ ]annotate_Feng.ipynb 2024-12-21 23:35 8.1K 
[ ]annotate_Xu.ipynb 2024-12-21 23:37 8.2K 
[ ]annotate_Asp.ipynb 2024-12-21 23:35 9.5K 
[ ]get_pseudobulk.ipynb 2024-12-21 23:36 10K 
[ ]build_pseudobulk_coe..>2024-12-21 23:37 10K 
[ ]annotate_Hill.ipynb 2024-12-21 23:35 11K 
[ ]label_transfer_Seura..>2024-12-21 23:35 12K 
[ ]label_transfer_Symph..>2024-12-21 23:37 12K 
[ ]annotate_Mantri.ipynb 2024-12-21 23:35 13K 
[ ]label_transfer_Seura..>2024-12-21 23:37 13K 
[ ]get_pseudobulk2.ipynb 2024-12-21 23:37 14K 
[ ]annotate_hierarchica..>2024-12-21 23:37 15K 
[ ]turtle_cross_stage_M..>2024-12-21 23:37 16K 
[ ]build_coexp_network1..>2024-12-21 23:36 16K 
[ ]annotate_CM_devCellP..>2024-12-21 23:36 17K 
[ ]annotate_hierarchica..>2024-12-21 23:37 17K 
[ ]annotate_hierarchica..>2024-12-21 23:37 19K 
[ ]get_consensus_cellty..>2024-12-21 23:35 19K 
[ ]convert_to_anndata.i..>2024-12-21 23:35 21K 
[TXT]turtle_stage_upregul..>2024-12-21 23:35 21K 
[ ]get_metacells2.ipynb 2024-12-21 23:35 24K 
[ ]stage21_sample1B_clu..>2024-12-21 23:36 56K 
[ ]stage21_sample1A_clu..>2024-12-21 23:36 62K 
[ ]stage21_sample2_clus..>2024-12-21 23:36 70K 
[ ]stage17_sample5B_clu..>2024-12-21 23:36 73K 
[ ]calc_expressolog.ipynb 2024-12-21 23:36 76K 
[ ]stage17_sample5Y_clu..>2024-12-21 23:36 81K 
[ ]stage14_sample8A_clu..>2024-12-21 23:36 81K 
[ ]calc_coexp_cons_pseu..>2024-12-21 23:37 81K 
[ ]stage14_sample7_clus..>2024-12-21 23:36 82K 
[ ]stage17_sample3_Tria..>2024-12-21 23:36 87K 
[ ]stage14_sample4_clus..>2024-12-21 23:36 105K 
[ ]get_clusters_monocle..>2024-12-21 23:36 116K 
[ ]plot_celltype_dist.i..>2024-12-21 23:36 121K 
[ ]get_markers_celltype..>2024-12-21 23:37 182K 
[ ]manual_anno1.ipynb 2024-12-21 23:37 199K 
[ ]batch_correction_cca..>2024-12-21 23:35 258K 
[ ]run_MN_cross_sample...>2024-12-21 23:35 272K 
[ ]run_MN_cross_stage_K..>2024-12-21 23:35 306K 
[TXT]stages3333_cluster_s..>2024-12-21 23:37 357K 
[ ]plot_sankey_cross_st..>2024-12-21 23:37 369K 
[ ]plot_celltype_dist_b..>2024-12-21 23:37 400K 
[ ]get_stage_specific_g..>2024-12-21 23:35 403K 
[ ]cross_sample_mapping..>2024-12-21 23:36 429K 
[ ]compare_clusters1.ipynb2024-12-21 23:36 430K 
[ ]run_MN_cross_stage.i..>2024-12-21 23:35 480K 
[TXT]stage14_GBA.csv 2024-12-21 23:36 491K 
[ ]run_GBA.ipynb 2024-12-21 23:36 491K 
[TXT]stage21_GBA.csv 2024-12-21 23:36 493K 
[TXT]stage17_GBA.csv 2024-12-21 23:36 493K 
[ ]batch_corrected_data..>2024-12-21 23:36 503K 
[TXT]stage21_sample1A_Kni..>2024-12-21 23:37 506K 
[TXT]stage21_sample1A_Kni..>2024-12-21 23:37 506K 
[TXT]stage21_sample2_Knig..>2024-12-21 23:37 511K 
[TXT]stage21_sample2_Knig..>2024-12-21 23:37 511K 
[ ]batch_correction_fas..>2024-12-21 23:36 548K 
[ ]batch_effects_seurat..>2024-12-21 23:35 586K 
[TXT]stage17_sample5B_Kni..>2024-12-21 23:37 586K 
[TXT]stage17_sample5B_Kni..>2024-12-21 23:37 586K 
[TXT]stage14_sample7_Knig..>2024-12-21 23:37 587K 
[TXT]stage14_sample7_Knig..>2024-12-21 23:37 587K 
[TXT]stage17_sample5Y_Kni..>2024-12-21 23:37 596K 
[TXT]stage17_sample5Y_Kni..>2024-12-21 23:37 596K 
[ ]get_clusters_scSHC.i..>2024-12-21 23:36 597K 
[TXT]stage21_sample1A_Qiu..>2024-12-21 23:37 597K 
[TXT]stage21_sample1A_Qiu..>2024-12-21 23:35 598K 
[TXT]stage14_sample8A_Kni..>2024-12-21 23:37 603K 
[TXT]stage14_sample8A_Kni..>2024-12-21 23:37 603K 
[TXT]stage17_sample5B_Qiu..>2024-12-21 23:37 610K 
[TXT]stage17_sample5Y_Qiu..>2024-12-21 23:37 615K 
[TXT]stage21_sample2_Qiu_..>2024-12-21 23:37 617K 
[TXT]stage21_sample1B_Kni..>2024-12-21 23:37 618K 
[TXT]stage21_sample1B_Kni..>2024-12-21 23:37 618K 
[TXT]stage21_sample2_Qiu_..>2024-12-21 23:37 626K 
[TXT]stage14_sample7_Qiu_..>2024-12-21 23:37 640K 
[TXT]stage17_sample3_Tria..>2024-12-21 23:37 669K 
[TXT]stage17_sample3_Tria..>2024-12-21 23:37 669K 
[ ]batch_correction_rpc..>2024-12-21 23:36 676K 
[TXT]stage14_sample8A_Qiu..>2024-12-21 23:37 682K 
[TXT]stage21_sample1B_Qiu..>2024-12-21 23:35 693K 
[TXT]stage17_sample3_Tria..>2024-12-21 23:37 694K 
[TXT]stage21_sample1B_Qiu..>2024-12-21 23:37 696K 
[TXT]stage14_sample4_Knig..>2024-12-21 23:37 709K 
[TXT]stage14_sample4_Knig..>2024-12-21 23:37 709K 
[TXT]stage14_sample7_Qiu_..>2024-12-21 23:37 715K 
[TXT]stage21_sample2_Qiu_..>2024-12-21 23:37 722K 
[TXT]stage14_sample8A_Qiu..>2024-12-21 23:37 727K 
[TXT]stage21_sample1A_Qiu..>2024-12-21 23:37 736K 
[TXT]stage17_sample5B_Qiu..>2024-12-21 23:37 753K 
[ ]Untitled.ipynb 2024-12-21 23:35 782K 
[ ]pairwise_MN_metacell..>2024-12-21 23:37 795K 
[TXT]stage17_sample5Y_Qiu..>2024-12-21 23:37 802K 
[TXT]stage14_sample4_Qiu_..>2024-12-21 23:37 828K 
[TXT]stage17_sample3_Tria..>2024-12-21 23:37 845K 
[TXT]stage21_metacell.csv 2024-12-21 23:37 848K 
[TXT]turtle_gene_symbol_E..>2024-12-21 23:35 849K 
[ ]batch_correction_ssS..>2024-12-21 23:35 876K 
[TXT]stage14_metacell.csv 2024-12-21 23:37 896K 
[TXT]stage21_sample1B_Qiu..>2024-12-21 23:37 905K 
[TXT]stage17_metacell.csv 2024-12-21 23:37 921K 
[TXT]stage17_sample5Y_Qiu..>2024-12-21 23:36 924K 
[TXT]stage14_sample4_Qiu_..>2024-12-21 23:37 927K 
[TXT]stage17_sample5B_Qiu..>2024-12-21 23:36 928K 
[TXT]stage14_sample7_Qiu_..>2024-12-21 23:36 953K 
[TXT]stage14_sample8A_Qiu..>2024-12-21 23:36 1.0M 
[TXT]stage21_sample1A_Qiu..>2024-12-21 23:36 1.0M 
[TXT]stage21_scanorama_cl..>2024-12-21 23:36 1.0M 
[TXT]stage17_sample3_Tria..>2024-12-21 23:36 1.0M 
[TXT]stage14_scanorama_cl..>2024-12-21 23:36 1.0M 
[TXT]stage17_scanorama_cl..>2024-12-21 23:36 1.0M 
[TXT]stage21_sample1B_Qiu..>2024-12-21 23:36 1.0M 
[TXT]stage21_sample2_Qiu_..>2024-12-21 23:36 1.0M 
[ ]batch_correction_sca..>2024-12-21 23:36 1.1M 
[TXT]turtle_chicken_ortho..>2024-12-21 23:35 1.1M 
[TXT]turtle_stage_tau.csv 2024-12-21 23:37 1.2M 
[TXT]human_turtle_ortholo..>2024-12-21 23:35 1.2M 
[TXT]turtle_stage_markers..>2024-12-21 23:37 1.2M 
[TXT]stage17_scanorama_um..>2024-12-21 23:36 1.2M 
[TXT]stage14_sample4_Qiu_..>2024-12-21 23:36 1.2M 
[TXT]stage21_scanorama_um..>2024-12-21 23:36 1.2M 
[TXT]stage14_scanorama_um..>2024-12-21 23:36 1.3M 
[TXT]mouse_turtle_ortholo..>2024-12-21 23:36 1.3M 
[ ]harmonize_labels1.ipynb2024-12-21 23:34 1.4M 
[TXT]turtle_stage_gradien..>2024-12-21 23:35 1.4M 
[ ]stage21_integrated_p..>2024-12-21 23:37 1.6M 
[ ]get_clusters_monocle..>2024-12-21 23:36 1.7M 
[TXT]turtle_info.csv 2024-12-21 23:35 1.7M 
[ ]stage14_integrated_p..>2024-12-21 23:37 1.8M 
[ ]stage17_integrated_p..>2024-12-21 23:37 1.8M 
[TXT]stage21_Knight-Schri..>2024-12-21 23:37 1.9M 
[TXT]stage21_merged_batch..>2024-12-21 23:36 1.9M 
[TXT]stage17_Knight-Schri..>2024-12-21 23:37 2.0M 
[TXT]stage14_merged_batch..>2024-12-21 23:35 2.0M 
[TXT]stage17_merged_batch..>2024-12-21 23:35 2.0M 
[TXT]stage14_Knight-Schri..>2024-12-21 23:37 2.0M 
[ ]stage17_pseudobulk_e..>2024-12-21 23:36 2.3M 
[ ]stage21_pseudobulk_e..>2024-12-21 23:36 2.3M 
[ ]stage14_pseudobulk_e..>2024-12-21 23:36 2.4M 
[ ]stage21_metacell_MN_..>2024-12-21 23:37 2.9M 
[TXT]turtle_scanorama_clu..>2024-12-21 23:35 3.0M 
[ ]stage17_metacell_MN_..>2024-12-21 23:37 3.2M 
[TXT]stage17_Qiu_SHC_Mono..>2024-12-21 23:36 3.3M 
[TXT]turtle_stage17_cellt..>2024-12-21 23:37 3.4M 
[TXT]stage21_Qiu_SHC_Mono..>2024-12-21 23:36 3.5M 
[TXT]turtle_stage14_cellt..>2024-12-21 23:37 3.5M 
[TXT]stage14_Qiu_SHC_Mono..>2024-12-21 23:36 3.5M 
[TXT]turtle_stage21_cellt..>2024-12-21 23:37 3.6M 
[TXT]turtle_scanorama_uma..>2024-12-21 23:35 3.7M 
[ ]stage14_metacell_MN_..>2024-12-21 23:37 3.8M 
[ ]get_clusters_monocle..>2024-12-21 23:36 4.1M 
[TXT]turtle_celltype_mark..>2024-12-21 23:37 4.6M 
[ ]turtle_full_integrat..>2024-12-21 23:37 4.9M 
[ ]turtle_integrated_ps..>2024-12-21 23:37 5.1M 
[TXT]turtle_celltype_anno..>2024-12-21 23:35 9.3M 
[ ]stage21_sample1A_hvg..>2024-12-21 23:35 43M 
[ ]stage21_sample1A_raw..>2024-12-21 23:35 45M 
[ ]stage21_sample1A_hvg..>2024-12-21 23:35 49M 
[ ]stage21_sample1B_hvg..>2024-12-21 23:35 51M 
[ ]stage17_sample3_Tria..>2024-12-21 23:35 56M 
[ ]stage17_sample5Y_hvg..>2024-12-21 23:35 57M 
[ ]stage21_sample2_hvg...>2024-12-21 23:35 57M 
[ ]stage17_sample5B_hvg..>2024-12-21 23:35 57M 
[ ]stage21_sample1B_hvg..>2024-12-21 23:35 60M 
[ ]stage21_sample2_raw_..>2024-12-21 23:35 60M 
[TXT]stage17_scanorama_pc..>2024-12-21 23:36 61M 
[ ]stage21_sample1B_raw..>2024-12-21 23:35 62M 
[TXT]stage21_scanorama_pc..>2024-12-21 23:36 62M 
[ ]stage14_sample7_hvg...>2024-12-21 23:36 63M 
[TXT]stage14_scanorama_pc..>2024-12-21 23:36 64M 
[ ]stage17_sample3_Tria..>2024-12-21 23:35 65M 
[ ]stage21_sample2_hvg...>2024-12-21 23:35 66M 
[ ]stage17_sample5Y_hvg..>2024-12-21 23:35 66M 
[ ]stage17_sample5B_hvg..>2024-12-21 23:35 67M 
[ ]stage14_sample8A_hvg..>2024-12-21 23:35 68M 
[ ]stage17_sample3_Tria..>2024-12-21 23:35 70M 
[ ]stage17_sample5B_raw..>2024-12-21 23:35 72M 
[ ]stage17_sample5Y_raw..>2024-12-21 23:35 73M 
[ ]stage14_sample7_hvg...>2024-12-21 23:36 74M 
[ ]stage14_sample4_hvg...>2024-12-21 23:36 76M 
[ ]stage14_sample8A_hvg..>2024-12-21 23:35 80M 
[ ]stage14_sample7_raw_..>2024-12-21 23:35 88M 
[ ]stage14_sample4_hvg...>2024-12-21 23:34 89M 
[ ]stage14_sample8A_raw..>2024-12-21 23:35 95M 
[ ]stage14_sample4_raw_..>2024-12-21 23:36 97M 
[ ]stage21_fastMNN.Rdata 2024-12-21 23:36 177M 
[TXT]turtle_scanorama_pca..>2024-12-21 23:35 187M 
[ ]stage17_fastMNN.Rdata 2024-12-21 23:36 214M 
[ ]stage14_1_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage14_3_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage21_2_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage14_2_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage17_3_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage17_1_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage21_1_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage17_2_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage21_sample_aggre..>2024-12-21 23:36 258M 
[ ]stage21_3_top6000.Rdata2024-12-21 23:36 258M 
[ ]stage14_sample_aggre..>2024-12-21 23:36 259M 
[ ]stage17_sample_aggre..>2024-12-21 23:36 259M 
[ ]stage14_fastMNN.Rdata 2024-12-21 23:36 261M 
[ ]stage21_sample1A_dat..>2024-12-21 23:37 1.0G 
[ ]stage21_sample2_data..>2024-12-21 23:37 1.1G 
[ ]stage14_sample7_data..>2024-12-21 23:36 1.2G 
[ ]stage17_sample5B_dat..>2024-12-21 23:37 1.3G 
[ ]stage14_sample8A_dat..>2024-12-21 23:36 1.3G 
[ ]stage17_sample5Y_dat..>2024-12-21 23:37 1.3G 
[ ]stage21_sample1B_dat..>2024-12-21 23:37 1.3G 
[ ]stage17_sample3_Tria..>2024-12-21 23:37 1.3G 
[ ]stage14_sample4_data..>2024-12-21 23:35 1.6G 
[ ]stage21_integrated_r..>2024-12-21 23:36 1.9G 
[ ]stage21_integrated_c..>2024-12-21 23:35 1.9G 
[ ]turtle_scanorama.h5ad 2024-12-21 23:35 1.9G 
[ ]stage17_integrated_r..>2024-12-21 23:36 1.9G 
[ ]stage17_integrated_c..>2024-12-21 23:35 1.9G 
[ ]stage14_integrated_r..>2024-12-21 23:36 2.1G 
[ ]stage14_integrated_c..>2024-12-21 23:35 2.1G 
[ ]turtle_stage17_coexp..>2024-12-21 23:37 2.1G 
[ ]turtle_stage14_coexp..>2024-12-21 23:37 2.2G 
[ ]turtle_stage21_coexp..>2024-12-21 23:37 2.2G 
[ ]turtle_integrated_ss..>2024-12-21 23:35 3.1G