./genome/Dasypus_novemcinctus.Dasnov3.0.95_mod.spike.gtf ./genome/Genome ./genome/Log.out ./genome/SA ./genome/SAindex ./genome/chrLength.txt ./genome/chrName.txt ./genome/chrNameLength.txt ./genome/chrStart.txt ./genome/dasNov3_spike.fa ./genome/exonGeTrInfo.tab ./genome/exonInfo.tab ./genome/geneInfo.tab ./genome/gene_annotations_v0.95_spikeins.Rdata ./genome/genomeParameters.txt ./genome/mito.Rdata ./genome/sjdbInfo.txt ./genome/sjdbList.fromGTF.out.tab ./genome/sjdbList.out.tab ./genome/transcriptInfo.tab ./matlab_files/GO.arm.genes ./matlab_files/GO.arm.mat ./matlab_files/GO.arm.terms ./matlab_files/attr.mat ./matlab_files/counts.mat ./matlab_files/homologs.mat ./matlab_files/pData.mat ./matlab_files/personal_counts.mat ./quad16-90/16-90.merged.gtf ./quad16-90/16-90.trans.fa ./quad16-90/Genome ./quad16-90/Log.out ./quad16-90/SA ./quad16-90/SAindex ./quad16-90/chrLength.txt ./quad16-90/chrName.txt ./quad16-90/chrNameLength.txt ./quad16-90/chrStart.txt ./quad16-90/exonGeTrInfo.tab ./quad16-90/exonInfo.tab ./quad16-90/geneInfo.tab ./quad16-90/gene_annotations_v0.95.quad16-90.Rdata ./quad16-90/genomeParameters.txt ./quad16-90/sjdbInfo.txt ./quad16-90/sjdbList.fromGTF.out.tab ./quad16-90/sjdbList.out.tab ./quad16-90/transcriptInfo.tab ./r_files/GO.arm.Rdata ./r_files/counts.Rdata ./r_files/homologs.Rdata ./r_files/personal_counts.Rdata ./scrnaseq/305264/Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq/305264/Solo.out/Gene/filtered/genes.tsv ./scrnaseq/305264/Solo.out/Gene/filtered/matrix.mtx ./scrnaseq/305264/Solo.out/Gene/raw/barcodes.tsv ./scrnaseq/305264/Solo.out/Gene/raw/features.tsv ./scrnaseq/305264/Solo.out/Gene/raw/matrix.mtx ./scrnaseq/305264/Solo.out/Gene/Features.stats ./scrnaseq/305264/Solo.out/Gene/Summary.csv ./scrnaseq/305264/Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq/305264/Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq/305264/Solo.out/Velocyto/raw/features.tsv ./scrnaseq/305264/Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq/305264/Solo.out/Velocyto/Features.stats ./scrnaseq/305264/Solo.out/Velocyto/Summary.csv ./scrnaseq/305264/Solo.out/305264.bend.png ./scrnaseq/305264/Solo.out/305264.counts.png ./scrnaseq/305264/Solo.out/305264.elbow.png ./scrnaseq/305264/Solo.out/305264.feature.png ./scrnaseq/305264/Solo.out/305264.hvgs.png ./scrnaseq/305264/Solo.out/305264.jack.png ./scrnaseq/305264/Solo.out/305264.pca.png ./scrnaseq/305264/Solo.out/305264.png ./scrnaseq/305264/Solo.out/305264.rna.png ./scrnaseq/305264/Solo.out/305264.tsne.png ./scrnaseq/305264/Solo.out/305264.umap.png ./scrnaseq/305264/Solo.out/Barcodes.stats ./scrnaseq/305264/Solo.out/meta.setup.Rdata ./scrnaseq/305264/Solo.out/pbmc.Rdata ./scrnaseq/305264/Solo.out/sce.Rdata ./scrnaseq/305264/Aligned.out.bam ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L001_I1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L001_R1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L001_R2_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L002_I1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L002_R1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L002_R2_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L003_I1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L003_R1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L003_R2_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L004_I1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L004_R1_001.fastq.gz ./scrnaseq/305264/Ballouz_01_10XGEX_16901_S1_L004_R2_001.fastq.gz ./scrnaseq/305264/Log.final.out ./scrnaseq/305264/Log.out ./scrnaseq/305264/Log.progress.out ./scrnaseq/305264/ReadsPerGene.out.tab ./scrnaseq/305264/SJ.out.tab ./scrnaseq/305265/Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq/305265/Solo.out/Gene/filtered/genes.tsv ./scrnaseq/305265/Solo.out/Gene/filtered/matrix.mtx ./scrnaseq/305265/Solo.out/Gene/raw/barcodes.tsv ./scrnaseq/305265/Solo.out/Gene/raw/features.tsv ./scrnaseq/305265/Solo.out/Gene/raw/matrix.mtx ./scrnaseq/305265/Solo.out/Gene/Features.stats ./scrnaseq/305265/Solo.out/Gene/Summary.csv ./scrnaseq/305265/Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq/305265/Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq/305265/Solo.out/Velocyto/raw/features.tsv ./scrnaseq/305265/Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq/305265/Solo.out/Velocyto/Features.stats ./scrnaseq/305265/Solo.out/Velocyto/Summary.csv ./scrnaseq/305265/Solo.out/305265.bend.png ./scrnaseq/305265/Solo.out/305265.counts.png ./scrnaseq/305265/Solo.out/305265.elbow.png ./scrnaseq/305265/Solo.out/305265.feature.png ./scrnaseq/305265/Solo.out/305265.hvgs.png ./scrnaseq/305265/Solo.out/305265.jack.png ./scrnaseq/305265/Solo.out/305265.pca.png ./scrnaseq/305265/Solo.out/305265.png ./scrnaseq/305265/Solo.out/305265.rna.png ./scrnaseq/305265/Solo.out/305265.tsne.png ./scrnaseq/305265/Solo.out/305265.umap.png ./scrnaseq/305265/Solo.out/Barcodes.stats ./scrnaseq/305265/Solo.out/meta.setup.Rdata ./scrnaseq/305265/Solo.out/pbmc.Rdata ./scrnaseq/305265/Solo.out/sce.Rdata ./scrnaseq/305265/Aligned.out.bam ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L001_I1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L001_R1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L001_R2_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L002_I1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L002_R1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L002_R2_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L003_I1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L003_R1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L003_R2_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L004_I1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L004_R1_001.fastq.gz ./scrnaseq/305265/Ballouz_01_10XGEX_16902_S2_L004_R2_001.fastq.gz ./scrnaseq/305265/Log.final.out ./scrnaseq/305265/Log.out ./scrnaseq/305265/Log.progress.out ./scrnaseq/305265/ReadsPerGene.out.tab ./scrnaseq/305265/SJ.out.tab ./scrnaseq/305266/Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq/305266/Solo.out/Gene/filtered/genes.tsv ./scrnaseq/305266/Solo.out/Gene/filtered/matrix.mtx ./scrnaseq/305266/Solo.out/Gene/raw/barcodes.tsv ./scrnaseq/305266/Solo.out/Gene/raw/features.tsv ./scrnaseq/305266/Solo.out/Gene/raw/matrix.mtx ./scrnaseq/305266/Solo.out/Gene/Features.stats ./scrnaseq/305266/Solo.out/Gene/Summary.csv ./scrnaseq/305266/Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq/305266/Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq/305266/Solo.out/Velocyto/raw/features.tsv ./scrnaseq/305266/Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq/305266/Solo.out/Velocyto/Features.stats ./scrnaseq/305266/Solo.out/Velocyto/Summary.csv ./scrnaseq/305266/Solo.out/305266.bend.png ./scrnaseq/305266/Solo.out/305266.counts.png ./scrnaseq/305266/Solo.out/305266.elbow.png ./scrnaseq/305266/Solo.out/305266.feature.png ./scrnaseq/305266/Solo.out/305266.hvgs.png ./scrnaseq/305266/Solo.out/305266.jack.png ./scrnaseq/305266/Solo.out/305266.pca.png ./scrnaseq/305266/Solo.out/305266.png ./scrnaseq/305266/Solo.out/305266.rna.png ./scrnaseq/305266/Solo.out/305266.tsne.png ./scrnaseq/305266/Solo.out/305266.umap.png ./scrnaseq/305266/Solo.out/Barcodes.stats ./scrnaseq/305266/Solo.out/meta.setup.Rdata ./scrnaseq/305266/Solo.out/pbmc.Rdata ./scrnaseq/305266/Solo.out/sce.Rdata ./scrnaseq/305266/Aligned.out.bam ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L001_I1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L001_R1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L001_R2_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L002_I1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L002_R1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L002_R2_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L003_I1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L003_R1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L003_R2_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L004_I1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L004_R1_001.fastq.gz ./scrnaseq/305266/Ballouz_01_10XGEX_16903_S3_L004_R2_001.fastq.gz ./scrnaseq/305266/Log.final.out ./scrnaseq/305266/Log.out ./scrnaseq/305266/Log.progress.out ./scrnaseq/305266/ReadsPerGene.out.tab ./scrnaseq/305266/SJ.out.tab ./scrnaseq/305267/Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq/305267/Solo.out/Gene/filtered/genes.tsv ./scrnaseq/305267/Solo.out/Gene/filtered/matrix.mtx ./scrnaseq/305267/Solo.out/Gene/raw/barcodes.tsv ./scrnaseq/305267/Solo.out/Gene/raw/features.tsv ./scrnaseq/305267/Solo.out/Gene/raw/matrix.mtx ./scrnaseq/305267/Solo.out/Gene/Features.stats ./scrnaseq/305267/Solo.out/Gene/Summary.csv ./scrnaseq/305267/Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq/305267/Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq/305267/Solo.out/Velocyto/raw/features.tsv ./scrnaseq/305267/Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq/305267/Solo.out/Velocyto/Features.stats ./scrnaseq/305267/Solo.out/Velocyto/Summary.csv ./scrnaseq/305267/Solo.out/305267.bend.png ./scrnaseq/305267/Solo.out/305267.counts.png ./scrnaseq/305267/Solo.out/305267.elbow.png ./scrnaseq/305267/Solo.out/305267.feature.png ./scrnaseq/305267/Solo.out/305267.hvgs.png ./scrnaseq/305267/Solo.out/305267.jack.png ./scrnaseq/305267/Solo.out/305267.pca.png ./scrnaseq/305267/Solo.out/305267.png ./scrnaseq/305267/Solo.out/305267.rna.png ./scrnaseq/305267/Solo.out/305267.tsne.png ./scrnaseq/305267/Solo.out/305267.umap.png ./scrnaseq/305267/Solo.out/Barcodes.stats ./scrnaseq/305267/Solo.out/meta.setup.Rdata ./scrnaseq/305267/Solo.out/pbmc.Rdata ./scrnaseq/305267/Solo.out/sce.Rdata ./scrnaseq/305267/Aligned.out.bam ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L001_I1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L001_R1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L001_R2_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L002_I1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L002_R1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L002_R2_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L003_I1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L003_R1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L003_R2_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L004_I1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L004_R1_001.fastq.gz ./scrnaseq/305267/Ballouz_01_10XGEX_16904_S4_L004_R2_001.fastq.gz ./scrnaseq/305267/Log.final.out ./scrnaseq/305267/Log.out ./scrnaseq/305267/Log.progress.out ./scrnaseq/305267/ReadsPerGene.out.tab ./scrnaseq/305267/SJ.out.tab ./scrnaseq/combined.features.png ./scrnaseq/combined.integ.Rdata ./scrnaseq/combined.integ.png ./scrnaseq/combined2.integ.png ./scrnaseq/combined3.integ.png ./scrnaseq/combined4.integ.png ./scrnaseq/meta.Rdata ./scrnaseq/meta.results.png ./scrnaseq/nohup.out ./scrnaseq/pbmc.combined.Rdata ./scrnaseq/sc.r ./scrnaseq/sce.combined.Rdata ./scrnaseq/seo.combined.Rdata ./scrnaseq/test ./scrnaseq_ase/305264Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq_ase/305264Solo.out/Gene/filtered/features.tsv ./scrnaseq_ase/305264Solo.out/Gene/filtered/matrix.mtx ./scrnaseq_ase/305264Solo.out/Gene/raw/barcodes.tsv ./scrnaseq_ase/305264Solo.out/Gene/raw/features.tsv ./scrnaseq_ase/305264Solo.out/Gene/raw/matrix.mtx ./scrnaseq_ase/305264Solo.out/Gene/Features.stats ./scrnaseq_ase/305264Solo.out/Gene/Summary.csv ./scrnaseq_ase/305264Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq_ase/305264Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq_ase/305264Solo.out/Velocyto/raw/features.tsv ./scrnaseq_ase/305264Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq_ase/305264Solo.out/Velocyto/Features.stats ./scrnaseq_ase/305264Solo.out/Velocyto/Summary.csv ./scrnaseq_ase/305264Solo.out/Barcodes.stats ./scrnaseq_ase/305265Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq_ase/305265Solo.out/Gene/filtered/features.tsv ./scrnaseq_ase/305265Solo.out/Gene/filtered/matrix.mtx ./scrnaseq_ase/305265Solo.out/Gene/raw/barcodes.tsv ./scrnaseq_ase/305265Solo.out/Gene/raw/features.tsv ./scrnaseq_ase/305265Solo.out/Gene/raw/matrix.mtx ./scrnaseq_ase/305265Solo.out/Gene/Features.stats ./scrnaseq_ase/305265Solo.out/Gene/Summary.csv ./scrnaseq_ase/305265Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq_ase/305265Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq_ase/305265Solo.out/Velocyto/raw/features.tsv ./scrnaseq_ase/305265Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq_ase/305265Solo.out/Velocyto/Features.stats ./scrnaseq_ase/305265Solo.out/Velocyto/Summary.csv ./scrnaseq_ase/305265Solo.out/Barcodes.stats ./scrnaseq_ase/305266Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq_ase/305266Solo.out/Gene/filtered/features.tsv ./scrnaseq_ase/305266Solo.out/Gene/filtered/matrix.mtx ./scrnaseq_ase/305266Solo.out/Gene/raw/barcodes.tsv ./scrnaseq_ase/305266Solo.out/Gene/raw/features.tsv ./scrnaseq_ase/305266Solo.out/Gene/raw/matrix.mtx ./scrnaseq_ase/305266Solo.out/Gene/Features.stats ./scrnaseq_ase/305266Solo.out/Gene/Summary.csv ./scrnaseq_ase/305266Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq_ase/305266Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq_ase/305266Solo.out/Velocyto/raw/features.tsv ./scrnaseq_ase/305266Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq_ase/305266Solo.out/Velocyto/Features.stats ./scrnaseq_ase/305266Solo.out/Velocyto/Summary.csv ./scrnaseq_ase/305266Solo.out/Barcodes.stats ./scrnaseq_ase/305267Solo.out/Gene/filtered/barcodes.tsv ./scrnaseq_ase/305267Solo.out/Gene/filtered/features.tsv ./scrnaseq_ase/305267Solo.out/Gene/filtered/matrix.mtx ./scrnaseq_ase/305267Solo.out/Gene/raw/barcodes.tsv ./scrnaseq_ase/305267Solo.out/Gene/raw/features.tsv ./scrnaseq_ase/305267Solo.out/Gene/raw/matrix.mtx ./scrnaseq_ase/305267Solo.out/Gene/Features.stats ./scrnaseq_ase/305267Solo.out/Gene/Summary.csv ./scrnaseq_ase/305267Solo.out/Gene/UMIperCellSorted.txt ./scrnaseq_ase/305267Solo.out/Velocyto/raw/barcodes.tsv ./scrnaseq_ase/305267Solo.out/Velocyto/raw/features.tsv ./scrnaseq_ase/305267Solo.out/Velocyto/raw/matrix.mtx ./scrnaseq_ase/305267Solo.out/Velocyto/Features.stats ./scrnaseq_ase/305267Solo.out/Velocyto/Summary.csv ./scrnaseq_ase/305267Solo.out/Barcodes.stats ./scrnaseq_ase/305264Aligned.out.bam ./scrnaseq_ase/305264Log.final.out ./scrnaseq_ase/305264Log.out ./scrnaseq_ase/305264Log.progress.out ./scrnaseq_ase/305264ReadsPerGene.out.tab ./scrnaseq_ase/305264SJ.out.tab ./scrnaseq_ase/305265Aligned.out.bam ./scrnaseq_ase/305265Log.final.out ./scrnaseq_ase/305265Log.out ./scrnaseq_ase/305265Log.progress.out ./scrnaseq_ase/305265ReadsPerGene.out.tab ./scrnaseq_ase/305265SJ.out.tab ./scrnaseq_ase/305266Aligned.out.bam ./scrnaseq_ase/305266Log.final.out ./scrnaseq_ase/305266Log.out ./scrnaseq_ase/305266Log.progress.out ./scrnaseq_ase/305266ReadsPerGene.out.tab ./scrnaseq_ase/305266SJ.out.tab ./scrnaseq_ase/305267Aligned.out.bam ./scrnaseq_ase/305267Log.final.out ./scrnaseq_ase/305267Log.out ./scrnaseq_ase/305267Log.progress.out ./scrnaseq_ase/305267ReadsPerGene.out.tab ./scrnaseq_ase/305267SJ.out.tab ./readme.txt ./md5sums.txt ./download_list.txt