##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=17,length=4200>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of raw reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of raw reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Read Position Bias (closer to 0 is better)">
##INFO=<ID=MQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality Bias (closer to 0 is better)">
##INFO=<ID=BQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Base Quality Bias (closer to 0 is better)">
##INFO=<ID=MQSBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality vs Strand Bias (closer to 0 is better)">
##INFO=<ID=SCBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Soft-Clip Length Bias (closer to 0 is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric, http://samtools.github.io/bcftools/rd-SegBias.pdf">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h">
##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMPLE1b	HG00100	SAMPLE1a	SAMPLE2	SAMPLE3
17	100	.	C	<*>	0	.	DP=16;I16=14,1,0,0,593,24461,0,0,838,48482,0,0,310,7132,0,0;QS=5,0;MQ0F=0	PL	0,3,19	0,6,78	0,12,128	0,9,118	0,15,134
17	101	.	C	<*>	0	.	DP=16;I16=14,1,0,0,567,22633,0,0,838,48482,0,0,309,7011,0,0;QS=5,0;MQ0F=0	PL	0,3,22	0,6,79	0,12,123	0,9,108	0,15,132
17	102	.	C	<*>	0	.	DP=16;I16=14,1,0,0,602,25074,0,0,838,48482,0,0,308,6904,0,0;QS=5,0;MQ0F=0	PL	0,3,20	0,6,78	0,12,129	0,9,121	0,15,139
17	103	.	T	C,<*>	0	.	DP=16;I16=13,1,1,0,588,25334,6,36,809,47641,29,841,301,6775,6,36;QS=4,1,0;SGB=-0.587685;RPBZ=-1.15831;MQBZ=-2.54951;MQSBZ=0.392232;BQBZ=-1.64233;SCBZ=3.74166;MQ0F=0	PL	6,3,0,6,3,6	0,6,79,6,79,79	0,12,131,12,131,131	0,9,118,9,118,118	0,15,147,15,147,147
17	104	.	G	C,<*>	0	.	DP=16;I16=13,1,1,0,536,21966,3,9,809,47641,29,841,298,6634,7,49;QS=4,1,0;SGB=-0.587685;RPBZ=-1.15831;MQBZ=-2.54951;MQSBZ=0.392232;BQBZ=-1.63041;SCBZ=3.74166;MQ0F=0	PL	4,3,0,4,3,4	0,6,78,6,78,78	0,12,123,12,123,123	0,9,101,9,101,101	0,15,133,15,133,133
17	105	.	G	<*>	0	.	DP=17;I16=15,1,0,0,541,20301,0,0,898,52082,0,0,303,6571,0,0;QS=5,0;MQ0F=0	PL	0,6,35	0,6,77	0,12,106	0,9,106	0,15,125
17	106	.	G	<*>	0	.	DP=17;I16=15,1,0,0,562,22318,0,0,898,52082,0,0,302,6476,0,0;QS=5,0;MQ0F=0	PL	0,6,44	0,6,75	0,12,130	0,9,92	0,15,124
17	107	.	C	<*>	0	.	DP=17;I16=15,1,0,0,606,24752,0,0,898,52082,0,0,301,6399,0,0;QS=5,0;MQ0F=0	PL	0,6,36	0,6,77	0,12,130	0,9,119	0,15,136
17	108	.	C	<*>	0	.	DP=17;I16=15,1,0,0,604,24464,0,0,898,52082,0,0,300,6340,0,0;QS=5,0;MQ0F=0	PL	0,6,37	0,6,78	0,12,128	0,9,119	0,15,135
17	109	.	T	C,<*>	0	.	DP=17;I16=14,1,1,0,639,27679,2,4,869,51241,29,841,287,6155,12,144;QS=4.89189,0.108108,0;SGB=-0.587685;RPBZ=-0.759816;MQBZ=-2.64575;MQSBZ=0.377964;BQBZ=-1.6641;SCBZ=2.82843;MQ0F=0	PL	0,1,28,3,31,30	0,6,77,6,77,77	0,12,133,12,133,133	0,9,120,9,120,120	0,15,150,15,150,150
17	110	.	G	<*>	0	.	DP=17;I16=15,1,0,0,608,24834,0,0,898,52082,0,0,298,6276,0,0;QS=5,0;MQ0F=0	PL	0,6,40	0,6,78	0,12,130	0,9,113	0,15,136
17	111	.	G	<*>	0	.	DP=17;I16=15,1,0,0,503,18985,0,0,898,52082,0,0,296,6222,0,0;QS=5,0;MQ0F=0	PL	0,6,45	0,6,75	0,12,92	0,9,95	0,15,119
17	112	.	C	G,<*>	0	.	DP=17;I16=14,1,1,0,577,23365,2,4,869,51241,29,841,279,5963,15,225;QS=4.88235,0.117647,0;SGB=-0.587685;RPBZ=-0.542725;MQBZ=-2.64575;MQSBZ=0.377964;BQBZ=-1.63663;SCBZ=2.82843;MQ0F=0	PL	0,1,25,3,28,27	0,6,77,6,77,77	0,12,129,12,129,129	0,9,103,9,103,103	0,15,135,15,135,135
17	113	.	A	G,<*>	0	.	DP=17;I16=14,1,1,0,565,22603,4,16,869,51241,29,841,275,5867,16,256;QS=4.88235,0.117647,0;SGB=-0.587685;RPBZ=-0.542725;MQBZ=-2.64575;MQSBZ=0.377964;BQBZ=-1.64646;SCBZ=2.82843;MQ0F=0	PL	0,1,25,3,28,27	0,6,71,6,71,71	0,12,120,12,120,120	0,9,102,9,102,102	0,15,139,15,139,139
17	114	.	C	<*>	0	.	DP=17;I16=15,1,0,0,581,22755,0,0,898,52082,0,0,288,6076,0,0;QS=5,0;MQ0F=0	PL	0,6,38	0,6,75	0,12,118	0,9,113	0,15,133
17	115	.	C	A,<*>	0	.	DP=19;I16=15,2,1,0,615,24761,12,144,958,55682,29,841,261,5423,25,625;QS=4.88785,0.11215,0;SGB=-0.587685;RPBZ=0.28942;MQBZ=-2.23607;MQSBZ=-1.30384;BQBZ=-1.4501;SCBZ=-0.445021;MQ0F=0	PL	0,6,43,6,43,43	0,6,80,6,80,80	0,12,123,12,123,123	3,0,86,9,89,93	0,21,153,21,153,153
17	116	.	A	C,<*>	0	.	DP=19;I16=15,2,1,0,631,25045,2,4,958,55682,29,841,265,5631,19,361;QS=4.90244,0.097561,0;SGB=-0.587685;RPBZ=0.0964735;MQBZ=-2.23607;MQSBZ=-1.30384;BQBZ=-1.65205;SCBZ=2.52179;MQ0F=0	PL	0,1,32,3,35,34	0,6,75,6,75,75	0,12,121,12,121,121	0,9,102,9,102,102	0,21,175,21,175,175
17	117	.	G	<*>	0	.	DP=19;I16=16,2,0,0,635,24843,0,0,987,56523,0,0,282,5960,0,0;QS=5,0;MQ0F=0	PL	0,6,42	0,6,77	0,12,117	0,9,97	0,21,177
17	118	.	G	<*>	0	.	DP=19;I16=16,2,0,0,583,22101,0,0,987,56523,0,0,280,5952,0,0;QS=5,0;MQ0F=0	PL	0,6,43	0,6,77	0,12,116	0,9,65	0,21,162
17	119	.	G	<*>	0	.	DP=18;I16=15,2,0,0,581,22015,0,0,927,52923,0,0,277,5917,0,0;QS=5,0;MQ0F=0	PL	0,6,47	0,6,78	0,12,114	0,6,76	0,21,160
17	120	.	A	G,<*>	0	.	DP=18;I16=14,2,1,0,608,23948,4,16,898,52082,29,841,252,5374,23,529;QS=4.91111,0.0888889,0;SGB=-0.587685;RPBZ=0.204375;MQBZ=-2.16025;MQSBZ=-1.23956;BQBZ=-1.64411;SCBZ=2.91548;MQ0F=0	PL	0,1,36,3,39,38	0,6,75,6,75,75	0,12,116,12,116,116	0,6,88,6,88,88	0,21,171,21,171,171
17	121	.	G	<*>	0	.	DP=18;I16=15,2,0,0,619,24187,0,0,927,52923,0,0,273,5909,0,0;QS=5,0;MQ0F=0	PL	0,6,48	0,6,80	0,12,121	0,6,84	0,21,168
17	122	.	C	<*>	0	.	DP=19;I16=16,2,0,0,655,26103,0,0,987,56523,0,0,271,5935,0,0;QS=5,0;MQ0F=0	PL	0,6,42	0,6,78	0,12,119	0,9,107	0,21,178
17	123	.	T	<*>	0	.	DP=17;I16=14,2,0,0,610,24776,0,0,867,49323,0,0,271,5929,0,0;QS=5,0;MQ0F=0	PL	0,6,48	0,6,75	0,9,99	0,9,123	0,18,166
17	124	.	T	<*>	0	.	DP=17;I16=14,2,0,0,547,20261,0,0,867,49323,0,0,271,5939,0,0;QS=5,0;MQ0F=0	PL	0,6,33	0,6,70	0,9,89	0,9,114	0,18,154
17	125	.	A	T,<*>	0	.	DP=16;I16=12,2,1,0,522,20316,4,16,778,44882,29,841,246,5290,25,625;QS=4.90476,0.0952381,0;SGB=-0.587685;RPBZ=0.926648;MQBZ=-2;MQSBZ=-1.1007;BQBZ=-1.62747;SCBZ=2.73861;MQ0F=0	PL	0,1,33,3,36,35	0,6,72,6,72,72	0,6,63,6,63,63	0,9,114,9,114,114	0,18,162,18,162,162
17	126	.	A	<*>	0	.	DP=16;I16=13,2,0,0,558,22192,0,0,807,45723,0,0,271,5907,0,0;QS=5,0;MQ0F=0	PL	0,6,50	0,6,72	0,6,67	0,9,117	0,18,174
17	127	.	C	<*>	0	.	DP=16;I16=13,2,0,0,554,21662,0,0,807,45723,0,0,271,5915,0,0;QS=5,0;MQ0F=0	PL	0,6,46	0,6,69	0,6,75	0,9,119	0,18,160
17	128	.	A	<*>	0	.	DP=16;I16=13,2,0,0,588,23772,0,0,807,45723,0,0,271,5939,0,0;QS=5,0;MQ0F=0	PL	0,6,59	0,6,74	0,6,72	0,9,121	0,18,168
17	129	.	A	<*>	0	.	DP=15;I16=12,2,0,0,558,23026,0,0,747,42123,0,0,272,5978,0,0;QS=5,0;MQ0F=0	PL	0,6,59	0,6,72	0,6,73	0,9,124	0,15,159
17	130	.	A	<*>	0	.	DP=15;I16=12,2,0,0,556,22898,0,0,747,42123,0,0,273,6031,0,0;QS=5,0;MQ0F=0	PL	0,6,60	0,6,76	0,6,68	0,9,124	0,15,152
17	131	.	C	<*>	0	.	DP=14;I16=11,2,0,0,517,21115,0,0,718,41282,0,0,248,5422,0,0;QS=5,0;MQ0F=0	PL	0,3,38	0,6,77	0,6,71	0,9,120	0,15,147
17	132	.	A	<*>	0	.	DP=14;I16=11,2,0,0,535,22437,0,0,718,41282,0,0,248,5450,0,0;QS=5,0;MQ0F=0	PL	0,3,42	0,6,73	0,6,75	0,9,120	0,15,151
17	133	.	T	<*>	0	.	DP=13;I16=11,2,0,0,512,20224,0,0,718,41282,0,0,248,5490,0,0;QS=5,0;MQ0F=0	PL	0,3,38	0,6,74	0,6,71	0,9,105	0,15,150
17	134	.	C	<*>	0	.	DP=13;I16=11,2,0,0,526,21368,0,0,718,41282,0,0,248,5542,0,0;QS=5,0;MQ0F=0	PL	0,3,41	0,6,79	0,6,77	0,9,105	0,15,152
17	135	.	T	<*>	0	.	DP=13;I16=11,2,0,0,528,21588,0,0,718,41282,0,0,248,5606,0,0;QS=5,0;MQ0F=0	PL	0,3,40	0,6,78	0,6,77	0,9,106	0,15,159
17	136	.	G	<*>	0	.	DP=13;I16=11,2,0,0,495,19137,0,0,718,41282,0,0,249,5681,0,0;QS=5,0;MQ0F=0	PL	0,3,39	0,6,79	0,6,71	0,9,105	0,15,134
17	137	.	T	<*>	0	.	DP=13;I16=11,2,0,0,494,18984,0,0,718,41282,0,0,251,5767,0,0;QS=5,0;MQ0F=0	PL	0,3,39	0,6,73	0,6,69	0,9,104	0,15,139
17	138	.	C	<*>	0	.	DP=13;I16=11,2,0,0,504,19886,0,0,718,41282,0,0,252,5816,0,0;QS=5,0;MQ0F=0	PL	0,3,40	0,6,79	0,6,71	0,9,108	0,15,142
17	139	.	C	<*>	0	.	DP=13;I16=11,2,0,0,479,17977,0,0,718,41282,0,0,252,5830,0,0;QS=5,0;MQ0F=0	PL	0,3,37	0,6,76	0,6,62	0,9,106	0,15,143
17	140	.	A	<*>	0	.	DP=13;I16=11,2,0,0,509,20051,0,0,718,41282,0,0,251,5809,0,0;QS=5,0;MQ0F=0	PL	0,3,39	0,6,73	0,6,70	0,9,107	0,15,153
17	141	.	G	<*>	0	.	DP=12;I16=10,2,0,0,452,17388,0,0,658,37682,0,0,250,5750,0,0;QS=5,0;MQ0F=0	PL	0,3,36	0,6,79	0,3,34	0,9,108	0,15,142
17	142	.	C	<*>	0	.	DP=12;I16=10,2,0,0,426,15624,0,0,658,37682,0,0,249,5701,0,0;QS=5,0;MQ0F=0	PL	0,3,39	0,6,78	0,3,37	0,9,97	0,15,129
17	143	.	G	<*>	0	.	DP=12;I16=10,2,0,0,364,11856,0,0,658,37682,0,0,248,5662,0,0;QS=5,0;MQ0F=0	PL	0,3,33	0,6,60	0,3,36	0,9,95	0,15,102
17	144	.	A	<*>	0	.	DP=12;I16=10,2,0,0,443,16837,0,0,658,37682,0,0,246,5584,0,0;QS=5,0;MQ0F=0	PL	0,3,33	0,6,75	0,3,41	0,9,105	0,15,129
17	145	.	A	<*>	0	.	DP=12;I16=10,2,0,0,451,17401,0,0,658,37682,0,0,244,5518,0,0;QS=5,0;MQ0F=0	PL	0,3,42	0,6,74	0,3,34	0,9,106	0,15,138
17	146	.	T	<*>	0	.	DP=12;I16=10,2,0,0,439,16671,0,0,658,37682,0,0,242,5464,0,0;QS=5,0;MQ0F=0	PL	0,3,37	0,6,73	0,3,41	0,9,103	0,15,128
17	147	.	A	<*>	0	.	DP=12;I16=10,2,0,0,444,16692,0,0,658,37682,0,0,240,5422,0,0;QS=5,0;MQ0F=0	PL	0,3,40	0,6,70	0,3,41	0,9,99	0,15,140
17	148	.	C	<*>	0	.	DP=12;I16=10,2,0,0,465,18131,0,0,658,37682,0,0,237,5341,0,0;QS=5,0;MQ0F=0	PL	0,3,39	0,6,77	0,3,41	0,9,106	0,15,146
17	149	.	C	<*>	0	.	DP=12;I16=10,2,0,0,433,16205,0,0,658,37682,0,0,233,5221,0,0;QS=5,0;MQ0F=0	PL	0,3,38	0,6,77	0,3,18	0,9,109	0,15,140
17	150	.	T	<*>	0	.	DP=11;I16=9,2,0,0,436,17434,0,0,629,36841,0,0,230,5112,0,0;QS=5,0;MQ0F=0	PL	0,3,36	0,6,76	0,3,40	0,6,84	0,15,152