##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=17,length=4200>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of raw reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of raw reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Read Position Bias (closer to 0 is better)">
##INFO=<ID=MQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality Bias (closer to 0 is better)">
##INFO=<ID=BQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Base Quality Bias (closer to 0 is better)">
##INFO=<ID=MQSBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality vs Strand Bias (closer to 0 is better)">
##INFO=<ID=SCBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Soft-Clip Length Bias (closer to 0 is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric, http://samtools.github.io/bcftools/rd-SegBias.pdf">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h">
##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMPLE1	SAMPLE2
17	100	.	C	<*>	0	.	DP=9;I16=7,1,0,0,322,13492,0,0,449,26041,0,0,173,4019,0,0;QS=2,0;MQ0F=0	PL	0,9,118	0,15,134
17	101	.	C	<*>	0	.	DP=9;I16=7,1,0,0,299,12029,0,0,449,26041,0,0,172,3954,0,0;QS=2,0;MQ0F=0	PL	0,9,108	0,15,132
17	102	.	C	<*>	0	.	DP=9;I16=7,1,0,0,327,13835,0,0,449,26041,0,0,171,3895,0,0;QS=2,0;MQ0F=0	PL	0,9,121	0,15,139
17	103	.	T	<*>	0	.	DP=9;I16=7,1,0,0,330,14238,0,0,449,26041,0,0,170,3842,0,0;QS=2,0;MQ0F=0	PL	0,9,118	0,15,147
17	104	.	G	<*>	0	.	DP=9;I16=7,1,0,0,291,11939,0,0,449,26041,0,0,168,3746,0,0;QS=2,0;MQ0F=0	PL	0,9,101	0,15,133
17	105	.	G	<*>	0	.	DP=9;I16=7,1,0,0,285,11215,0,0,449,26041,0,0,166,3658,0,0;QS=2,0;MQ0F=0	PL	0,9,106	0,15,125
17	106	.	G	<*>	0	.	DP=9;I16=7,1,0,0,264,10620,0,0,449,26041,0,0,164,3578,0,0;QS=2,0;MQ0F=0	PL	0,9,92	0,15,124
17	107	.	C	<*>	0	.	DP=9;I16=7,1,0,0,314,13030,0,0,449,26041,0,0,162,3506,0,0;QS=2,0;MQ0F=0	PL	0,9,119	0,15,136
17	108	.	C	<*>	0	.	DP=9;I16=7,1,0,0,314,12964,0,0,449,26041,0,0,160,3442,0,0;QS=2,0;MQ0F=0	PL	0,9,119	0,15,135
17	109	.	T	<*>	0	.	DP=9;I16=7,1,0,0,349,15565,0,0,449,26041,0,0,158,3386,0,0;QS=2,0;MQ0F=0	PL	0,9,120	0,15,150
17	110	.	G	<*>	0	.	DP=9;I16=7,1,0,0,312,12794,0,0,449,26041,0,0,156,3338,0,0;QS=2,0;MQ0F=0	PL	0,9,113	0,15,136
17	111	.	G	<*>	0	.	DP=9;I16=7,1,0,0,257,10693,0,0,449,26041,0,0,153,3249,0,0;QS=2,0;MQ0F=0	PL	0,9,95	0,15,119
17	112	.	C	<*>	0	.	DP=9;I16=7,1,0,0,295,11875,0,0,449,26041,0,0,150,3170,0,0;QS=2,0;MQ0F=0	PL	0,9,103	0,15,135
17	113	.	A	<*>	0	.	DP=9;I16=7,1,0,0,301,12565,0,0,449,26041,0,0,147,3101,0,0;QS=2,0;MQ0F=0	PL	0,9,102	0,15,139
17	114	.	C	<*>	0	.	DP=9;I16=7,1,0,0,306,12386,0,0,449,26041,0,0,144,3042,0,0;QS=2,0;MQ0F=0	PL	0,9,113	0,15,133
17	115	.	C	A,<*>	0	.	DP=11;I16=7,2,1,0,321,13261,12,144,509,29641,29,841,117,2369,25,625;QS=1.88785,0.11215,0;SGB=-0.516033;RPBZ=0.174608;MQBZ=-2;MQSBZ=-1.125;BQBZ=-1.23359;SCBZ=-0.496904;MQ0F=0	PL	3,0,86,9,89,93	0,21,153,21,153,153
17	116	.	A	<*>	0	.	DP=11;I16=8,2,0,0,354,14068,0,0,538,30482,0,0,141,2959,0,0;QS=2,0;MQ0F=0	PL	0,9,102	0,21,175
17	117	.	G	<*>	0	.	DP=11;I16=8,2,0,0,356,14150,0,0,538,30482,0,0,140,2938,0,0;QS=2,0;MQ0F=0	PL	0,9,97	0,21,177
17	118	.	G	<*>	0	.	DP=11;I16=8,2,0,0,303,11685,0,0,538,30482,0,0,139,2931,0,0;QS=2,0;MQ0F=0	PL	0,9,65	0,21,162
17	119	.	G	<*>	0	.	DP=10;I16=7,2,0,0,299,11343,0,0,478,26882,0,0,137,2887,0,0;QS=2,0;MQ0F=0	PL	0,6,76	0,21,160
17	120	.	A	<*>	0	.	DP=10;I16=7,2,0,0,335,13257,0,0,478,26882,0,0,136,2854,0,0;QS=2,0;MQ0F=0	PL	0,6,88	0,21,171
17	121	.	G	<*>	0	.	DP=10;I16=7,2,0,0,323,12457,0,0,478,26882,0,0,135,2831,0,0;QS=2,0;MQ0F=0	PL	0,6,84	0,21,168
17	122	.	C	<*>	0	.	DP=11;I16=8,2,0,0,372,14904,0,0,538,30482,0,0,134,2818,0,0;QS=2,0;MQ0F=0	PL	0,9,107	0,21,178
17	123	.	T	<*>	0	.	DP=10;I16=7,2,0,0,359,15071,0,0,478,26882,0,0,135,2815,0,0;QS=2,0;MQ0F=0	PL	0,9,123	0,18,166
17	124	.	T	<*>	0	.	DP=10;I16=7,2,0,0,330,12968,0,0,478,26882,0,0,136,2822,0,0;QS=2,0;MQ0F=0	PL	0,9,114	0,18,154
17	125	.	A	<*>	0	.	DP=10;I16=7,2,0,0,336,13370,0,0,478,26882,0,0,136,2790,0,0;QS=2,0;MQ0F=0	PL	0,9,114	0,18,162
17	126	.	A	<*>	0	.	DP=10;I16=7,2,0,0,354,14758,0,0,478,26882,0,0,136,2770,0,0;QS=2,0;MQ0F=0	PL	0,9,117	0,18,174
17	127	.	C	<*>	0	.	DP=10;I16=7,2,0,0,347,13991,0,0,478,26882,0,0,136,2762,0,0;QS=2,0;MQ0F=0	PL	0,9,119	0,18,160
17	128	.	A	<*>	0	.	DP=10;I16=7,2,0,0,365,15241,0,0,478,26882,0,0,136,2766,0,0;QS=2,0;MQ0F=0	PL	0,9,121	0,18,168
17	129	.	A	<*>	0	.	DP=9;I16=6,2,0,0,336,14562,0,0,418,23282,0,0,137,2781,0,0;QS=2,0;MQ0F=0	PL	0,9,124	0,15,159
17	130	.	A	<*>	0	.	DP=9;I16=6,2,0,0,335,14487,0,0,418,23282,0,0,138,2806,0,0;QS=2,0;MQ0F=0	PL	0,9,124	0,15,152
17	131	.	C	<*>	0	.	DP=9;I16=6,2,0,0,317,13093,0,0,418,23282,0,0,139,2841,0,0;QS=2,0;MQ0F=0	PL	0,9,120	0,15,147
17	132	.	A	<*>	0	.	DP=9;I16=6,2,0,0,331,14103,0,0,418,23282,0,0,140,2886,0,0;QS=2,0;MQ0F=0	PL	0,9,120	0,15,151
17	133	.	T	<*>	0	.	DP=8;I16=6,2,0,0,315,12451,0,0,418,23282,0,0,141,2941,0,0;QS=2,0;MQ0F=0	PL	0,9,105	0,15,150
17	134	.	C	<*>	0	.	DP=8;I16=6,2,0,0,314,12374,0,0,418,23282,0,0,142,3006,0,0;QS=2,0;MQ0F=0	PL	0,9,105	0,15,152
17	135	.	T	<*>	0	.	DP=8;I16=6,2,0,0,319,12845,0,0,418,23282,0,0,143,3081,0,0;QS=2,0;MQ0F=0	PL	0,9,106	0,15,159
17	136	.	G	<*>	0	.	DP=8;I16=6,2,0,0,291,10787,0,0,418,23282,0,0,145,3165,0,0;QS=2,0;MQ0F=0	PL	0,9,105	0,15,134
17	137	.	T	<*>	0	.	DP=8;I16=6,2,0,0,300,11444,0,0,418,23282,0,0,148,3258,0,0;QS=2,0;MQ0F=0	PL	0,9,104	0,15,139
17	138	.	C	<*>	0	.	DP=8;I16=6,2,0,0,300,11542,0,0,418,23282,0,0,150,3312,0,0;QS=2,0;MQ0F=0	PL	0,9,108	0,15,142
17	139	.	C	<*>	0	.	DP=8;I16=6,2,0,0,291,10833,0,0,418,23282,0,0,152,3378,0,0;QS=2,0;MQ0F=0	PL	0,9,106	0,15,143
17	140	.	A	<*>	0	.	DP=8;I16=6,2,0,0,314,12410,0,0,418,23282,0,0,153,3405,0,0;QS=2,0;MQ0F=0	PL	0,9,107	0,15,153
17	141	.	G	<*>	0	.	DP=8;I16=6,2,0,0,295,11151,0,0,418,23282,0,0,153,3391,0,0;QS=2,0;MQ0F=0	PL	0,9,108	0,15,142
17	142	.	C	<*>	0	.	DP=8;I16=6,2,0,0,264,9036,0,0,418,23282,0,0,153,3385,0,0;QS=2,0;MQ0F=0	PL	0,9,97	0,15,129
17	143	.	G	<*>	0	.	DP=8;I16=6,2,0,0,229,7291,0,0,418,23282,0,0,153,3387,0,0;QS=2,0;MQ0F=0	PL	0,9,95	0,15,102
17	144	.	A	<*>	0	.	DP=8;I16=6,2,0,0,287,10705,0,0,418,23282,0,0,153,3397,0,0;QS=2,0;MQ0F=0	PL	0,9,105	0,15,129
17	145	.	A	<*>	0	.	DP=8;I16=6,2,0,0,294,11200,0,0,418,23282,0,0,153,3415,0,0;QS=2,0;MQ0F=0	PL	0,9,106	0,15,138
17	146	.	T	<*>	0	.	DP=8;I16=6,2,0,0,281,10419,0,0,418,23282,0,0,153,3441,0,0;QS=2,0;MQ0F=0	PL	0,9,103	0,15,128
17	147	.	A	<*>	0	.	DP=8;I16=6,2,0,0,286,10442,0,0,418,23282,0,0,153,3475,0,0;QS=2,0;MQ0F=0	PL	0,9,99	0,15,140
17	148	.	C	<*>	0	.	DP=8;I16=6,2,0,0,301,11401,0,0,418,23282,0,0,152,3466,0,0;QS=2,0;MQ0F=0	PL	0,9,106	0,15,146
17	149	.	C	<*>	0	.	DP=8;I16=6,2,0,0,293,10907,0,0,418,23282,0,0,150,3414,0,0;QS=2,0;MQ0F=0	PL	0,9,109	0,15,140
17	150	.	T	<*>	0	.	DP=7;I16=5,2,0,0,277,11093,0,0,389,22441,0,0,149,3369,0,0;QS=2,0;MQ0F=0	PL	0,6,84	0,15,152