# This file can be used as input to the subset plotting tools at: # https://github.com/dlaehnemann/bankers2 # Genotype intersections across samples: @SMPS NA00003 NA00002 NA00001 # The first line of each sample contains its count of missing genotypes, with a '-' appended # to the sample name. # Human readable output (-H) was requested. Subset intersection counts are therefore sorted by # sample and repeated for each contained sample. For each sample, counts are in banker's # sequence order regarding all other samples. # [1] Number of shared non-ref genotypes [2] Samples sharing non-ref genotype (GT) 4 NA00003- 9 NA00003 1 NA00003,NA00002 0 NA00003,NA00001 1 NA00003,NA00002,NA00001 1 NA00002- 4 NA00002 1 NA00002,NA00003 8 NA00002,NA00001 1 NA00002,NA00003,NA00001 1 NA00001- 5 NA00001 0 NA00001,NA00003 8 NA00001,NA00002 1 NA00001,NA00003,NA00002