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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| doc/ | 2023-02-21 07:24 | - | |
| examples/ | 2023-02-21 07:24 | - | |
| htslib-1.17/ | 2023-04-10 15:14 | - | |
| lz4/ | 2023-04-10 15:14 | - | |
| m4/ | 2023-02-21 07:24 | - | |
| misc/ | 2023-04-10 15:14 | - | |
| test/ | 2023-04-10 15:14 | - | |
| config.h | 2023-04-10 15:13 | 85 | |
| version.h | 2023-04-10 15:13 | 256 | |
| AUTHORS | 2014-05-28 11:49 | 828 | |
| bam.h | 2022-02-27 01:57 | 1.5K | |
| version.sh | 2023-02-21 07:24 | 1.5K | |
| sample.h | 2014-08-01 10:48 | 1.5K | |
| LICENSE | 2023-01-12 11:15 | 1.7K | |
| bedidx.h | 2019-09-30 16:51 | 1.7K | |
| bam_ampliconclip.h | 2021-06-25 08:48 | 1.8K | |
| config.mk | 2023-04-10 15:13 | 1.8K | |
| samtools.h | 2022-12-06 04:52 | 1.9K | |
| bam2bcf.h | 2022-02-10 06:19 | 2.0K | |
| bam_lpileup.h | 2019-09-30 18:41 | 2.0K | |
| bam_plbuf.c | 2019-09-30 18:41 | 2.1K | |
| bam_plbuf.h | 2020-09-10 10:27 | 2.1K | |
| config.mk.in | 2020-01-15 09:02 | 2.1K | |
| bam_aux.c | 2020-10-20 16:29 | 2.1K | |
| config.h.in | 2023-02-21 07:34 | 2.3K | |
| stats_isize.h | 2014-08-01 10:48 | 2.4K | |
| bam_flags.c | 2021-06-22 06:26 | 3.2K | |
| sam_utils.h | 2022-12-06 04:52 | 3.3K | |
| bam_tview.h | 2021-11-01 04:40 | 3.5K | |
| tmp_file.h | 2020-06-02 18:12 | 3.6K | |
| sam_opts.h | 2019-11-12 09:10 | 4.0K | |
| bam2bcf.c | 2023-01-16 07:15 | 4.3K | |
| sample.c | 2016-01-28 05:56 | 4.4K | |
| consensus_pileup.h | 2022-12-02 11:37 | 4.5K | |
| bam_color.c | 2020-02-04 09:00 | 4.9K | |
| configure.ac | 2021-06-22 06:26 | 5.6K | |
| sam_utils.c | 2022-12-06 04:52 | 5.7K | |
| bam_quickcheck.c | 2019-11-12 09:10 | 6.6K | |
| bam_lpileup.c | 2021-12-07 11:14 | 6.8K | |
| sam_opts.c | 2019-11-12 09:10 | 6.8K | |
| bam_rmdupse.c | 2019-11-12 09:10 | 7.3K | |
| dict.c | 2022-07-11 10:43 | 7.3K | |
| stats_isize.c | 2019-11-12 09:10 | 7.9K | |
| cut_target.c | 2021-02-22 07:23 | 8.7K | |
| bam_index.c | 2022-07-28 07:50 | 8.7K | |
| bam.c | 2022-07-27 08:45 | 8.8K | |
| INSTALL | 2022-02-18 07:17 | 9.9K | |
| bam_rmdup.c | 2019-11-12 09:10 | 10K | |
| bedcov.c | 2022-07-27 08:45 | 10K | |
| bam_tview_html.c | 2019-11-12 09:10 | 11K | |
| bam_aux.o | 2023-04-10 15:13 | 11K | |
| bam_plbuf.o | 2023-04-10 15:13 | 13K | |
| bamtk.c | 2023-01-05 12:10 | 13K | |
| bam_flags.o | 2023-04-10 15:13 | 13K | |
| bam_stat.c | 2021-05-10 09:45 | 13K | |
| tmp_file.c | 2019-11-12 09:10 | 13K | |
| bam_samples.c | 2021-08-10 10:52 | 14K | |
| splaysort.h | 2021-12-07 11:14 | 14K | |
| install-sh | 2015-12-14 09:44 | 14K | |
| faidx.c | 2023-01-16 07:15 | 15K | |
| bam_import.c | 2023-01-16 07:15 | 16K | |
| bam_addrprg.c | 2021-06-22 06:26 | 16K | |
| bam_tview_curses.c | 2021-11-30 11:33 | 16K | |
| bam2bcf.o | 2023-04-10 15:13 | 17K | |
| Makefile | 2023-02-21 07:34 | 18K | |
| bam_md.c | 2023-01-16 07:15 | 18K | |
| bam_color.o | 2023-04-10 15:13 | 18K | |
| reference.c | 2022-08-15 12:46 | 18K | |
| consensus_pileup.c | 2022-12-02 11:37 | 18K | |
| bedidx.c | 2019-12-12 06:16 | 19K | |
| bam_cat.c | 2021-06-22 06:26 | 19K | |
| bam_reheader.c | 2021-08-10 11:38 | 19K | |
| bam_tview.c | 2022-11-03 07:48 | 20K | |
| cram_size.c | 2023-01-05 12:10 | 20K | |
| bamshuf.c | 2023-01-16 12:28 | 20K | |
| reset.c | 2022-12-06 04:52 | 20K | |
| bam_split.c | 2019-11-18 10:31 | 21K | |
| sam_opts.o | 2023-04-10 15:14 | 24K | |
| bam_quickcheck.o | 2023-04-10 15:14 | 24K | |
| padding.c | 2020-07-21 10:01 | 25K | |
| bam_mate.c | 2023-01-16 07:15 | 25K | |
| bam.o | 2023-04-10 15:14 | 27K | |
| coverage.c | 2022-04-18 12:11 | 27K | |
| phase.c | 2022-01-25 11:43 | 29K | |
| bam_fastq.c | 2022-07-21 08:25 | 29K | |
| tmp_file.o | 2023-04-10 15:14 | 31K | |
| consensus_pileup.o | 2023-04-10 15:14 | 32K | |
| bam2depth.c | 2022-09-22 07:43 | 33K | |
| bam_ampliconclip.c | 2023-01-16 07:15 | 33K | |
| sam_utils.o | 2023-04-10 15:14 | 40K | |
| bam_lpileup.o | 2023-04-10 15:14 | 40K | |
| bam_index.o | 2023-04-10 15:13 | 42K | |
| bam_tview_html.o | 2023-04-10 15:14 | 43K | |
| bam_plcmd.c | 2023-02-15 12:13 | 45K | |
| cut_target.o | 2023-04-10 15:13 | 45K | |
| bam_stat.o | 2023-04-10 15:13 | 46K | |
| faidx.o | 2023-04-10 15:13 | 46K | |
| stats_isize.o | 2023-04-10 15:13 | 48K | |
| bamtk.o | 2023-04-10 15:13 | 50K | |
| sam_view.c | 2023-02-17 06:35 | 59K | |
| amplicon_stats.c | 2022-09-27 08:59 | 63K | |
| bam_tview_curses.o | 2023-04-10 15:14 | 63K | |
| dict.o | 2023-04-10 15:13 | 66K | |
| reference.o | 2023-04-10 15:14 | 66K | |
| bam_samples.o | 2023-04-10 15:14 | 66K | |
| bedcov.o | 2023-04-10 15:13 | 69K | |
| bam_addrprg.o | 2023-04-10 15:14 | 69K | |
| bam_cat.o | 2023-04-10 15:13 | 73K | |
| sample.o | 2023-04-10 15:13 | 75K | |
| cram_size.o | 2023-04-10 15:14 | 76K | |
| reset.o | 2023-04-10 15:14 | 78K | |
| bam_markdup.c | 2023-01-18 10:16 | 81K | |
| bam_reheader.o | 2023-04-10 15:13 | 82K | |
| coverage.o | 2023-04-10 15:13 | 87K | |
| bam_rmdupse.o | 2023-04-10 15:13 | 88K | |
| NEWS | 2023-02-21 07:24 | 89K | |
| padding.o | 2023-04-10 15:13 | 89K | |
| bam_import.o | 2023-04-10 15:14 | 91K | |
| bam_consensus.c | 2023-02-21 06:41 | 96K | |
| bam_tview.o | 2023-04-10 15:14 | 100K | |
| bam_md.o | 2023-04-10 15:13 | 101K | |
| bam_fastq.o | 2023-04-10 15:13 | 101K | |
| bam_split.o | 2023-04-10 15:13 | 105K | |
| stats.c | 2023-01-16 07:15 | 106K | |
| bam_mate.o | 2023-04-10 15:13 | 107K | |
| bedidx.o | 2023-04-10 15:14 | 108K | |
| ChangeLog.old | 2012-03-08 21:47 | 114K | |
| bam_sort.c | 2022-08-26 09:23 | 114K | |
| bam_rmdup.o | 2023-04-10 15:13 | 120K | |
| bam_ampliconclip.o | 2023-04-10 15:14 | 138K | |
| bamshuf.o | 2023-04-10 15:13 | 138K | |
| bam2depth.o | 2023-04-10 15:13 | 141K | |
| phase.o | 2023-04-10 15:13 | 171K | |
| bam_plcmd.o | 2023-04-10 15:13 | 177K | |
| configure | 2023-02-21 07:34 | 179K | |
| libst.a | 2023-04-10 15:14 | 200K | |
| amplicon_stats.o | 2023-04-10 15:14 | 211K | |
| bam_consensus.o | 2023-04-10 15:14 | 235K | |
| sam_view.o | 2023-04-10 15:13 | 253K | |
| bam_markdup.o | 2023-04-10 15:14 | 288K | |
| stats.o | 2023-04-10 15:13 | 334K | |
| bam_sort.o | 2023-04-10 15:13 | 549K | |
| samtools | 2023-04-10 15:14 | 8.4M | |