### Example data for testing installation of TElocal ### To test whether your installation of the TElocal is working properly, we have provided sample files for a test run. ### TElocal ### ## Using version 0.1.0 # Single-end Input files (BAM folder): testData_SE.bam Indexed GTF files (GTF folder): mm10_refseq.gtf.ind mm10_rmsk_TEinst.gtf.ind # You will need to decompress them before use. CMD line: $ TElocal --sortByPos --mode multi --GTF mm10_refseq.gtf.ind --TE mm10_rmsk_TEinst.gtf.ind --project TElocal_SEtest -b testData_SE.bam Output file (see output folder for expected results): TElocal_SEtest.cntTable # Paired-end Input files (BAM folder): testData_PE.bam Indexed GTF files (GTF folder): mm10_refseq.gtf.ind mm10_rmsk_TEinst.gtf.ind # You will need to decompress them before use. CMD line: $ TElocal --sortByPos --mode multi --GTF mm10_refseq.gtf.ind --TE mm10_rmsk_TEinst.gtf.ind --project TElocal_PEtest -b testData_PE.bam Output file (see output folder for expected results): TElocal_PEtest.cntTable