Processing coords file (hap.filter.coords)...
  processed 10000 alignments
  processed 20000 alignments
  processed 30000 alignments
  processed 40000 alignments
  processed 50000 alignments
Processed 56635 alignment records [54381 valid]
Finding chains for 2074 contigs...
  processed 1000 contigs...
  processed 2000 contigs...
Found 240314 total edges [3 constructtime, 3 searchtime, 437939 stackadd]
Looking for contained contigs...
Found 1569 joint contained contigs
Printed 1569 total contained contigs