# HOMER Peaks
# Peak finding parameters:
# tag directory = HK82_CTCF_M_S11/
#
# total peaks = 107
# peak size = 161
# peaks found using tags on both strands
# minimum distance between peaks = 322
# fragment length = 160
# genome size = 2000000000
# Total tags = 19126853.0
# Total tags in peaks = 24085.0
# Approximate IP efficiency = 0.13%
# tags per bp = 0.008321
# expected tags per peak = 1.340
# maximum tags considered per bp = 1.0
# effective number of tags used for normalization = 10000000.0
# Peaks have been centered at maximum tag pile-up
# FDR rate threshold = 0.001000000
# FDR effective poisson threshold = 2.034575e-08
# FDR tag threshold = 12.0
# number of putative peaks = 2777
#
# input tag directory = HK88_Input_M_pooled/
# Fold over input required = 4.00
# Poisson p-value over input required = 1.00e-04
# Putative peaks filtered by input = 2554
#
# size of region used for local filtering = 10000
# Fold over local region required = 4.00
# Poisson p-value over local region required = 1.00e-04
# Putative peaks filtered by local signal = 69
#
# Maximum fold under expected unique positions for tags = 2.00
# Putative peaks filtered for being too clonal = 47
#
# cmd = findPeaks HK82_CTCF_M_S11/ -i HK88_Input_M_pooled/ -style factor -o CTCF_M_peaks.txt
#
# Column Headers:
#PeakID	chr	start	end	strand	Normalized Tag Count	focus ratio	findPeaks Score	Total Tags (normalized to Control Experiment)	Control Tags	Fold Change vs Control	p-value vs Control	Fold Change vs Local	p-value vs Local	Clonal Fold Change
chr10-3	chr10	42596958	42597118	+	2268.0	0.705	482.000000	620.6	146.0	4.25	6.20e-186	13.22	0.00e+00	0.34
chr10-6	chr10	42400365	42400525	+	1266.3	0.616	461.000000	347.5	60.0	5.79	3.80e-142	7.07	0.00e+00	0.36
chr2-16	chr2	92315350	92315510	+	1070.7	1.000	172.000000	292.7	72.0	4.07	3.05e-84	23.85	0.00e+00	0.94
chr4-6	chr4	49155156	49155316	+	522.3	0.966	241.000000	142.8	29.0	4.92	5.41e-51	14.10	0.00e+00	0.67
chr7-5	chr7	61080535	61080695	+	473.2	0.882	133.000000	129.4	31.0	4.17	2.21e-39	25.81	0.00e+00	1.20
chr16-25	chr16	78608857	78609017	+	393.2	0.998	95.000000	107.5	5.0	21.50	3.55e-100	361.86	0.00e+00	1.93
chr8-10	chr8	96345228	96345388	+	291.7	0.995	100.000000	79.8	8.0	9.97	9.20e-50	811.91	0.00e+00	1.53
chr10-36	chr10	38881767	38881927	+	283.4	0.524	139.000000	77.5	15.0	5.16	9.44e-30	32.06	0.00e+00	1.12
chr16-11	chr16	46399988	46400148	+	224.8	0.982	150.000000	61.5	15.0	4.10	4.38e-19	7.19	5.46e-210	0.98
chr20-6	chr20	26310860	26311020	+	151.6	0.974	71.000000	41.5	10.0	4.15	1.78e-13	28.77	7.23e-304	1.82
chr10-47	chr10	39125535	39125695	+	144.8	0.832	109.000000	39.6	8.0	4.95	3.41e-15	18.39	5.08e-238	1.16
chr7-8	chr7	48161392	48161552	+	141.2	0.993	108.000000	38.6	0.5	77.19	4.22e-57	163.37	0.00e+00	1.20
chr10-29	chr10	42356705	42356865	+	141.2	0.655	186.000000	38.6	8.0	4.82	1.67e-14	4.15	5.06e-80	0.67
chrX-4	chrX	61815102	61815262	+	138.5	0.960	89.000000	37.9	9.0	4.21	2.38e-12	44.49	0.00e+00	1.39
chr4-11	chr4	49158420	49158580	+	135.9	0.911	184.000000	37.2	9.0	4.13	2.38e-12	6.00	3.01e-109	0.66
chr16-18	chr16	46401760	46401920	+	134.4	0.916	127.000000	36.7	9.0	4.08	9.85e-12	4.01	2.31e-73	0.95
chr17-10	chr17	22259345	22259505	+	134.4	0.926	69.000000	36.7	7.0	5.25	8.01e-15	10.45	2.91e-163	1.78
chr4-17	chr4	49099654	49099814	+	115.0	0.930	136.000000	31.4	5.0	6.29	4.52e-15	7.05	2.22e-106	0.83
chrX-7	chrX	61719728	61719888	+	110.8	0.981	66.000000	30.3	4.0	7.58	9.13e-17	10.91	1.34e-138	1.66
chr4-18	chr4	49644590	49644750	+	110.3	0.908	133.000000	30.2	6.0	5.03	2.56e-12	5.35	2.56e-81	0.84
chr11-6	chr11	51572618	51572778	+	103.0	0.745	68.000000	28.2	7.0	4.02	1.81e-09	6.77	1.84e-92	1.62
chr17-9	chr17	7475119	7475279	+	101.4	0.995	72.000000	27.7	0.5	55.46	4.15e-37	207.99	0.00e+00	1.56
chrY-10	chrY	13466748	13466908	+	97.2	0.799	134.000000	26.7	6.0	4.45	1.34e-09	4.95	6.16e-67	0.77
chr10-81	chr10	42544575	42544735	+	94.6	0.995	54.000000	25.9	4.0	6.47	1.57e-12	58.53	7.15e-245	1.86
chr11-8	chr11	48805049	48805209	+	93.1	0.989	58.000000	25.4	6.0	4.24	5.89e-09	83.68	4.35e-268	1.71
chr3-2	chr3	75718376	75718536	+	92.0	0.716	132.000000	25.2	4.0	6.29	1.57e-12	29.47	5.37e-187	0.79
chr17-14	chr17	22258286	22258446	+	91.5	0.741	60.000000	25.0	6.0	4.17	5.89e-09	6.49	5.07e-80	1.64
chr1-12	chr1	121355139	121355299	+	85.7	0.821	67.000000	23.4	2.0	11.72	4.79e-17	5.36	8.12e-64	1.48
chr8-20	chr8	46841702	46841862	+	85.2	0.881	55.000000	23.3	5.0	4.66	3.91e-09	12.41	3.13e-111	1.77
chr3-5	chr3	184716271	184716431	+	84.7	0.982	56.000000	23.2	0.5	46.31	2.80e-30	165.00	1.56e-291	1.67
chr7-12	chr7	61079637	61079797	+	77.9	0.700	75.000000	21.3	5.0	4.26	8.11e-08	4.22	6.23e-46	1.24
chr13-1	chr13	30409179	30409339	+	77.9	0.987	58.000000	21.3	2.0	10.65	6.11e-15	159.75	3.21e-266	1.65
chr4-42	chr4	49098149	49098309	+	77.4	0.895	85.000000	21.2	5.0	4.23	8.11e-08	4.32	9.61e-47	1.07
chr6-4	chr6	119558534	119558694	+	76.9	0.867	105.000000	21.0	5.0	4.20	8.11e-08	101.85	5.28e-231	0.85
chrY-18	chrY	13479527	13479687	+	74.2	0.877	101.000000	20.3	5.0	4.06	3.45e-07	4.38	2.89e-45	0.86
chr10-46	chr10	135500645	135500805	+	72.1	0.781	110.000000	19.9	4.0	4.97	5.16e-08	24.37	3.74e-134	0.78
chr21-6	chr21	9696058	9696218	+	68.0	0.935	82.000000	18.6	3.0	6.19	3.57e-09	44.38	4.00e-161	0.99
chr21-3	chr21	9827099	9827259	+	66.4	0.567	93.000000	18.4	1.0	18.44	6.06e-17	7.81	2.22e-67	0.87
chrX-13	chrX	61712584	61712744	+	66.4	0.992	57.000000	18.2	2.0	9.08	6.19e-12	43.12	6.82e-156	1.40
chr17-7	chr17	31149654	31149814	+	64.3	0.626	93.000000	17.6	2.0	8.79	5.61e-11	45.28	1.33e-153	0.85
chrY-20	chrY	13140990	13141150	+	64.3	0.774	92.000000	17.6	4.0	4.40	1.13e-06	21.61	1.91e-114	0.86
chr11-17	chr11	55015132	55015292	+	62.2	0.976	42.000000	17.0	2.0	8.50	5.61e-11	24.99	7.21e-119	1.86
chrY-25	chrY	13843927	13844087	+	62.2	0.772	87.000000	17.0	4.0	4.25	1.13e-06	4.57	3.18e-40	0.89
chr21-4	chr21	9825917	9826077	+	60.6	0.516	90.000000	16.6	3.0	5.53	1.24e-07	7.20	3.82e-58	0.84
chr4-61	chr4	49093787	49093947	+	60.1	0.702	64.000000	16.4	3.0	5.48	1.24e-07	8.68	7.97e-66	1.19
chr11-19	chr11	48963789	48963949	+	57.0	0.940	37.000000	15.6	2.0	7.79	3.87e-09	30.28	8.47e-118	1.93
chr14-1	chr14	88237598	88237758	+	57.0	0.667	89.000000	16.0	4.0	4.00	4.89e-06	55.51	8.68e-146	0.83
chr12-16	chr12	34838891	34839051	+	55.9	0.867	41.000000	15.3	3.0	5.10	6.70e-07	5.96	2.61e-46	1.77
chr16-29	chr16	33963185	33963345	+	55.9	0.668	82.000000	15.4	1.0	15.44	3.00e-13	6.95	2.24e-52	0.89
chr6-7	chr6	13064725	13064885	+	55.4	0.982	54.000000	15.2	0.5	30.30	1.42e-17	115.68	3.32e-175	1.35
chr4-49	chr4	49142477	49142637	+	54.4	0.981	72.000000	14.9	3.0	4.96	3.40e-06	5.30	9.91e-41	0.97
chr8-15	chr8	70602293	70602453	+	53.9	0.836	73.000000	14.7	3.0	4.91	3.40e-06	72.35	1.55e-149	0.95
chr21-5	chr21	9825537	9825697	+	53.9	0.681	86.000000	14.7	0.5	29.44	4.25e-16	6.14	1.60e-44	0.81
chr10-78	chr10	42817487	42817647	+	51.8	0.749	58.000000	14.2	3.0	4.72	3.40e-06	10.92	8.23e-66	1.17
chr16-28	chr16	33955161	33955321	+	51.8	0.909	84.000000	14.2	2.0	7.08	2.93e-08	4.61	4.31e-34	0.85
chrX-18	chrX	61709760	61709920	+	49.1	0.989	45.000000	13.4	3.0	4.48	1.61e-05	27.89	1.33e-98	1.42
chrY-39	chrY	58993869	58994029	+	49.1	0.860	64.000000	13.4	3.0	4.48	1.61e-05	7.14	3.26e-47	1.00
chr17-13	chr17	45214495	45214655	+	47.6	0.826	61.000000	13.0	2.0	6.50	2.07e-07	13.96	8.01e-69	1.05
chr12-8	chr12	97058454	97058614	+	46.5	0.923	57.000000	12.7	1.0	12.72	8.32e-10	115.72	1.99e-147	1.18
chrY-80	chrY	13824813	13824973	+	46.5	0.938	38.000000	12.7	3.0	4.24	7.14e-05	19.64	1.79e-80	1.66
chr11-18	chr11	48882533	48882693	+	45.0	0.901	38.000000	12.3	2.0	6.15	1.36e-06	14.68	1.35e-67	1.65
chr20-5	chr20	26189920	26190080	+	44.4	0.610	73.000000	12.1	1.0	12.15	8.32e-10	11.75	3.07e-59	0.83
chr2-59	chr2	133016731	133016891	+	43.9	0.680	58.000000	12.0	3.0	4.00	7.14e-05	4.68	1.27e-29	1.03
chr4-90	chr4	58649784	58649944	+	43.9	0.977	40.000000	12.0	0.5	24.01	3.09e-13	54.61	3.37e-112	1.47
chr16-45	chr16	33973687	33973847	+	43.9	0.677	69.000000	12.3	3.0	4.10	7.14e-05	5.57	9.60e-35	0.87
chr21-22	chr21	10720866	10721026	+	43.4	0.825	34.000000	11.9	2.0	5.93	8.31e-06	8.57	1.27e-47	1.71
chr11-23	chr11	50764089	50764249	+	42.3	0.942	29.000000	11.6	2.0	5.79	8.31e-06	16.28	3.47e-67	1.96
chr2-91	chr2	148517860	148518020	+	41.8	0.988	38.000000	11.4	0.5	22.87	7.42e-12	74.07	2.27e-117	1.52
chr7-20	chr7	61783971	61784131	+	40.3	0.865	54.000000	11.0	1.0	11.01	1.00e-08	7.59	3.04e-40	1.02
chr2-62	chr2	133012674	133012834	+	39.7	0.686	56.000000	10.9	2.0	5.43	4.65e-05	5.99	1.37e-33	0.99
chr16-53	chr16	33866603	33866763	+	39.2	0.695	58.000000	10.7	2.0	5.36	4.65e-05	9.17	3.67e-45	0.94
chrY-57	chrY	10025135	10025295	+	39.2	0.898	50.000000	10.7	1.0	10.72	1.11e-07	5.50	1.79e-30	1.08
chrY-95	chrY	13669476	13669636	+	39.2	0.974	32.000000	10.7	1.0	10.72	1.11e-07	36.67	1.09e-87	1.73
chr4-75	chr4	49133642	49133802	+	38.7	0.987	52.000000	10.6	2.0	5.29	4.65e-05	11.84	5.05e-52	1.02
chr2-61	chr2	133035934	133036094	+	38.2	0.817	58.000000	10.4	0.5	20.87	1.63e-10	5.15	2.34e-28	0.92
chr3-6	chr3	102812946	102813106	+	37.6	0.961	51.000000	10.3	0.5	20.58	1.63e-10	54.32	2.85e-96	1.01
chr5-6	chr5	28501415	28501575	+	37.6	0.947	42.000000	10.3	2.0	5.15	4.65e-05	68.75	1.62e-103	1.23
chr9-19	chr9	66971393	66971553	+	37.6	0.740	36.000000	10.3	2.0	5.15	4.65e-05	18.33	2.02e-63	1.43
chr11-24	chr11	55013313	55013473	+	37.6	0.923	29.000000	10.3	2.0	5.15	4.65e-05	12.19	4.04e-50	1.86
chr20-7	chr20	26188863	26189023	+	37.6	0.669	60.000000	10.3	0.5	20.58	1.63e-10	9.89	1.50e-45	0.89
chr7-24	chr7	136473439	136473599	+	37.1	0.959	47.000000	10.1	0.5	20.30	1.63e-10	114.18	1.41e-117	1.08
chrY-47	chrY	10020589	10020749	+	37.1	0.867	59.000000	10.1	2.0	5.07	4.65e-05	5.98	1.84e-31	0.89
chr20-9	chr20	26319352	26319512	+	36.6	0.921	45.000000	10.0	2.0	5.00	4.65e-05	4.39	1.91e-23	1.12
chrY-59	chrY	10019183	10019343	+	36.6	0.784	48.000000	10.0	2.0	5.00	4.65e-05	6.84	1.70e-34	1.05
chr7-27	chr7	22784403	22784563	+	35.0	0.918	42.000000	9.6	0.5	19.15	3.26e-09	56.87	5.07e-91	1.16
chr12-11	chr12	20704341	20704501	+	35.0	0.957	51.000000	9.6	0.5	19.15	3.26e-09	66.04	2.65e-95	0.96
chr3-9	chr3	143697403	143697563	+	32.4	0.955	26.000000	8.9	1.0	8.86	1.02e-05	57.41	1.30e-84	1.81
chr8-31	chr8	46846794	46846954	+	32.4	0.984	28.000000	8.9	0.5	17.72	5.88e-08	5.15	2.34e-24	1.68
chr5-4	chr5	71146707	71146867	+	31.4	0.696	48.000000	8.6	0.5	17.15	5.88e-08	38.53	1.95e-69	0.96
chr20-18	chr20	18466751	18466911	+	31.4	0.924	32.000000	8.6	0.5	17.15	5.88e-08	54.73	1.02e-80	1.44
chr3-12	chr3	81341290	81341450	+	29.8	0.983	23.000000	8.1	1.0	8.15	1.02e-05	61.11	1.83e-79	1.84
chrY-73	chrY	10037707	10037867	+	29.8	0.855	40.000000	8.1	1.0	8.15	1.02e-05	23.70	1.24e-56	1.09
chr5-19	chr5	50716242	50716402	+	28.8	0.948	22.000000	7.9	0.5	15.72	9.40e-07	62.24	3.61e-77	1.86
chr22-2	chr22	18878420	18878580	+	28.8	0.851	43.000000	7.9	1.0	7.86	8.32e-05	21.68	1.11e-52	0.97
chr14-14	chr14	19001200	19001360	+	27.7	0.747	21.000000	7.6	1.0	7.58	8.32e-05	5.76	3.37e-23	1.91
chr3-11	chr3	128354405	128354565	+	27.2	0.981	24.000000	7.4	1.0	7.43	8.32e-05	48.15	2.35e-67	1.71
chr10-93	chr10	135490987	135491147	+	27.2	0.963	42.000000	7.4	0.5	14.87	9.40e-07	1588.91	7.15e-146	0.94
chr1-21	chr1	149034894	149035054	+	26.1	0.591	40.000000	7.1	1.0	7.15	8.32e-05	8.91	3.88e-30	0.95
chr2-100	chr2	42210339	42210499	+	25.6	0.980	35.000000	7.0	0.5	14.01	9.40e-07	38.39	7.33e-59	1.09
chr14-15	chr14	19001945	19002105	+	25.1	0.812	21.000000	6.9	0.5	13.72	1.32e-05	4.96	1.35e-18	1.81
chr1-22	chr1	26455890	26456050	+	24.6	0.922	39.000000	6.7	0.5	13.44	1.32e-05	49.52	1.28e-61	0.91
chr8-47	chr8	76952690	76952850	+	24.6	0.981	19.000000	6.7	0.5	13.44	1.32e-05	48.68	2.82e-61	1.97
chrX-38	chrX	151692616	151692776	+	24.6	0.979	25.000000	6.7	0.5	13.44	1.32e-05	75.59	4.16e-70	1.42
chr2-103	chr2	243153720	243153880	+	23.0	0.825	35.000000	6.3	0.5	12.58	1.32e-05	89.63	5.83e-69	1.00
chr10-99	chr10	39079420	39079580	+	22.0	0.657	38.000000	6.0	0.5	12.01	1.32e-05	5.47	5.97e-18	0.85
chr16-76	chr16	33865508	33865668	+	22.0	0.716	38.000000	6.0	0.5	12.01	1.32e-05	5.06	8.61e-17	0.90
chr16-85	chr16	33874945	33875105	+	22.0	0.977	33.000000	6.0	0.5	12.01	1.32e-05	7.66	3.68e-23	1.01